Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F34 I0 R2
|
628 |
183.5 |
6829102 |
98.0% |
6692519 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,147,986 |
G→C |
7.8% |
L122L (CTG→CTC) |
plsX → |
putative phosphate acyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,147,986 | 0 | G | C | 7.8%
| 755.7
/ 44.2
| 217 | L122L (CTG→CTC) | plsX | putative phosphate acyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (88/112); new base C (7/10); total (95/122) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.34e-01 |
Only 100 of 220 total aligned reads displayed.
CCGGCCTTCGCAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTCTGGCTGAAGA > NC_000913/1147839‑1148132
|
ccGGCCTTCGCAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTgg < 1:287425/149‑1 (MQ=255)
gCCTTCGCAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAgg < 2:142316/149‑1 (MQ=255)
ccTTCGCAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAggg < 1:844695/149‑1 (MQ=255)
cGCAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAATCCCCTCCAGGGGCtt < 2:833369/149‑1 (MQ=255)
gCAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAgg < 1:982692/143‑1 (MQ=255)
gCAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAgg > 2:982692/1‑143 (MQ=255)
cAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAATCCCCTCCAGGGGCTTGa < 1:342328/149‑1 (MQ=255)
cAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAATCCCCTCCAGGGGCTTGa < 2:706594/149‑1 (MQ=255)
cAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAATCCCCTCCAGGGGCTTGa < 3:794979/149‑1 (MQ=255)
cAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGa < 2:1383765/149‑1 (MQ=255)
cAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGa < 4:1270671/149‑1 (MQ=255)
cAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGa < 4:1315056/149‑1 (MQ=255)
aGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGc < 1:15713/149‑1 (MQ=255)
cTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAg < 2:252798/137‑1 (MQ=255)
tATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTc < 3:1360917/149‑1 (MQ=255)
tCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCg > 3:502251/1‑149 (MQ=255)
gcgcCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGgcg > 1:813573/1‑149 (MQ=255)
tCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGa < 1:911254/149‑1 (MQ=255)
tCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGa < 3:824340/149‑1 (MQ=255)
gTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑g < 1:1441661/149‑1 (MQ=255)
gggAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGt > 2:944076/1‑149 (MQ=255)
ttCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTa < 1:1007271/145‑1 (MQ=255)
ttCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTAc > 3:580176/1‑149 (MQ=255)
aaTGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGa < 4:757195/120‑1 (MQ=255)
aaTGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGa > 3:757195/1‑120 (MQ=255)
aaTGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACcac > 1:140143/1‑149 (MQ=255)
aaTGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACcac > 3:213481/1‑149 (MQ=255)
aTGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACcaca > 4:1230690/1‑149 (MQ=255)
gCCCTGGGGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCTGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCaaaa < 1:1322552/149‑1 (MQ=255)
cccTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAg > 1:1087935/1‑149 (MQ=255)
ccTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAgg < 3:613507/149‑1 (MQ=255)
ccTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAgg < 1:1507447/149‑1 (MQ=255)
ccTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAgg < 4:1384936/149‑1 (MQ=255)
cTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGGTGATGGGGCTGGCAAAATTATTACTCAAGCCCATGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAggg > 3:1158445/1‑149 (MQ=255)
cTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAggg > 3:303617/1‑149 (MQ=255)
gCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCaaaa < 4:35356/149‑1 (MQ=255)
ggTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACgg < 2:67118/149‑1 (MQ=255)
gTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACggt > 2:1087314/1‑149 (MQ=255)
gTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACggt < 1:1355062/149‑1 (MQ=255)
gAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGAtt < 1:1268280/94‑1 (MQ=255)
gAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACggtgg < 3:495016/149‑1 (MQ=255)
aaaGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACggtggt > 3:858002/1‑149 (MQ=255)
aaaGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACggtggt < 2:390745/149‑1 (MQ=255)
aagaagGTCGAGCGCAAGCCTGAGTCAGTGCCGGTAATACCGGGGCGCTGAGGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTc > 4:1682498/1‑149 (MQ=255)
agaagGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTcc > 2:1276416/1‑149 (MQ=255)
agaagGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTcc > 4:261972/1‑149 (MQ=255)
gaagGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCt > 3:1548330/1‑149 (MQ=255)
aagGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCtt < 4:1490447/149‑1 (MQ=255)
gTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGc > 1:1068359/1‑90 (MQ=255)
gTCGAGCGCAAGCCTGTGTCAGTGCCGGT‑ATTCCGGGGCGGCGGAGGGGCTGGCAAAAATTATACTTAAGGCCCCGGGGGGGAATGGGCGGTCGGGGGCGGTGACGGGAATTACAAC‑TCCGCAAAAGGGGCAAACGGGTGTCCtttgct > 1:1695433/1‑145 (MQ=255)
gAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTa < 1:607253/149‑1 (MQ=255)
aGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAg < 2:1658989/149‑1 (MQ=255)
aGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCAAATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAg < 4:1596378/149‑1 (MQ=255)
gcgcAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGCCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAgg < 3:1230690/149‑1 (MQ=255)
cgcAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGGCCGGCGCTGGTGAC‑GGGATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTAACTTAggg < 2:759686/149‑1 (MQ=255)
gcAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAgggg > 2:578409/1‑149 (MQ=255)
aaGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGcc > 3:978333/1‑149 (MQ=255)
gCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAATCCCCTCCAGGGGCTTGa < 1:579234/77‑1 (MQ=38)
gCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGa < 1:198668/68‑1 (MQ=255)
gtgtCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTc < 3:261972/149‑1 (MQ=255)
gtCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGa < 3:741821/149‑1 (MQ=255)
tCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTAAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGAt < 4:252137/149‑1 (MQ=255)
tCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGACCCTGGAGGGGATTGTGCGCCCGGCGCTGGTGAC‑GGTATTACCCCATCAGCAAAAGGGCAAAACGGTGGTCCTTGAGTTATGGGCCAACGTCGAt > 4:629057/1‑149 (MQ=255)
gTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATtgt < 4:303617/149‑1 (MQ=255)
gTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATtgt < 4:1338164/149‑1 (MQ=255)
ccGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGAc < 4:580176/149‑1 (MQ=255)
cGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACa < 1:1390769/149‑1 (MQ=255)
ggTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACggtggt < 1:864091/116‑1 (MQ=255)
ggTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACggtggt > 2:864091/1‑116 (MQ=255)
gTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGc > 2:1478360/1‑149 (MQ=255)
tAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGca < 1:747142/149‑1 (MQ=255)
tACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACaa < 4:502251/149‑1 (MQ=255)
aCCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAggg > 2:334206/1‑123 (MQ=255)
gggCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTg < 4:217788/149‑1 (MQ=255)
ggggCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTg < 2:1614114/149‑1 (MQ=255)
ggCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTa > 3:1381058/1‑149 (MQ=255)
gCAAAAGTATAACTCAAGCCCCTGGAGGGGATTGAGCGTGCGGCGCTGGTGAC‑GGTATTACCAAATCAGCAAAAGGGCAAAACGGTGGTCTTCGACTTAGGGGCCAACGTCGATTGTGACAGCACAATCCTGGTGCAATTTGCGATTAt < 4:455723/149‑1 (MQ=255)
cAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATg < 4:1121359/149‑1 (MQ=255)
aaaaTTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGc < 3:25099/141‑1 (MQ=255)
aaaTTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATggg > 1:1153778/1‑149 (MQ=255)
attattACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCt > 3:1622344/1‑149 (MQ=255)
ttattaCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTAt > 2:588963/1‑143 (MQ=255)
ttattaCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTAt < 1:588963/143‑1 (MQ=255)
attaCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACcaca < 4:1026434/57‑1 (MQ=255)
ttaCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGt > 1:115113/1‑149 (MQ=255)
ttaCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGt > 3:482783/1‑149 (MQ=255)
gcTCAATCCCCTCCAGGGGCTTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTc > 4:183533/2‑149 (MQ=255)
aCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTc < 4:482783/149‑1 (MQ=255)
tCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTCTg > 2:1697650/1‑149 (MQ=255)
tCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTCTg > 3:1647554/1‑149 (MQ=255)
tCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTCTg > 1:412503/1‑149 (MQ=255)
tCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTCTg > 1:257594/1‑149 (MQ=255)
aaGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATtgtg < 2:1153726/103‑1 (MQ=255)
aaGCCACTGGAGGGGATTGAGCGTCCAGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTCTGGc < 1:231340/149‑1 (MQ=255)
cccTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAgg > 4:1028775/1‑57 (MQ=255)
cccTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAgg < 3:1028775/57‑1 (MQ=255)
cccTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTCTGGCTGaa > 1:1281514/1‑149 (MQ=255)
cTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGt > 3:727874/1‑113 (MQ=255)
cTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGt < 4:727874/113‑1 (MQ=255)
cTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTCTGGCTGAaga < 2:1062880/149‑1 (MQ=255)
|
CCGGCCTTCGCAAGCTATCCGCGCCAGTCGTGGGAGTTCAATGCGCGTGGCCCTGGAGCTGGTGAAAGAAGGTCGAGCGCAAGCCTGTGTCAGTGCCGGTAATACCGGGGCGCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGAC‑GGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGCACAATGCTGGTGCAATTTGCCATTATGGGCTCAGTTCTGGCTGAAGA > NC_000913/1147839‑1148132
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
