Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F71 I0 R1
|
810 |
98.9 |
3562578 |
97.8% |
3484201 |
143.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,367,510 |
T→G |
10.6% |
S135R (AGC→CGC) |
pspF ← |
psp operon transcriptional activator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,367,510 | 0 | T | G | 10.6%
| 198.7
/ 12.7
| 66 | S135R (AGC→CGC) | pspF | psp operon transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base T (30/29); new base G (5/2); total (35/31) |
| Fisher's exact test for biased strand distribution p-value = 4.33e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 |
CTTTCGCGCTCGCGCAGTGGTGGCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGT > NC_000913/1367362‑1367657
|
cTTTCGCGCTCGCGCAGTGGTGGCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCt < 3:213422/149‑1 (MQ=255)
tttCGCGCTCGCGCAGTGGTGGCAGTTGTACAACATCAAGAGCGAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGTCTTGATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACCTTCACCTGCAATCGTTGGCTg > 3:545462/1‑149 (MQ=255)
gcgcAGTGGTGGCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAAcgc > 4:433194/1‑149 (MQ=255)
gcgcAGTGGTGGCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCGGCAGCCAAcca > 4:795669/1‑147 (MQ=255)
cgcAGTGGTGGCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCGGCAGCCAAccat < 2:369030/149‑4 (MQ=255)
gcAGTGGTGGCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACgcgc > 2:137782/1‑149 (MQ=255)
aGTGGTGGCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCGGCAGCCAAccattgc < 3:795669/149‑7 (MQ=255)
tggCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGtt > 1:59615/1‑149 (MQ=255)
gCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCa > 4:76074/1‑149 (MQ=255)
gCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCa < 2:745947/149‑1 (MQ=255)
gTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCg < 4:819743/149‑1 (MQ=255)
tGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTa < 1:889251/149‑1 (MQ=255)
tGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTa < 2:195958/149‑1 (MQ=255)
tACAACAGCAAAAGCCCGTCGGTTGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACTATCGCCGGGAGATCGGCATTCGTCGAGCATACCAACCGCACATTCACCTGCAAGGGTTGGCTGCTGCCAACGCGCTCCAGTTCACCGTACt > 4:848456/1‑149 (MQ=255)
caTCAAAAGACAGTCAGTCGAGCAGGTCAACGCGAAAAGTGCCTTCATTGACCATCGCCGGGAAATCGGCCTACGTCGGCCATACCAACCGCACATTCACCTGCAATGTTTGACTACCGCCAACGCGCCCCAGTTCACCGTACTCAATc > 4:269903/1‑149 (MQ=255)
tCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCAc > 4:171155/1‑149 (MQ=255)
aaaaGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCAcgc < 3:521064/149‑1 (MQ=255)
aaaaGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCAcgc < 3:691516/149‑1 (MQ=255)
aaaGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCAcgcg > 2:432274/1‑149 (MQ=255)
gCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCaa < 2:123585/149‑1 (MQ=255)
tcggtcgAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAAtt < 2:754542/149‑1 (MQ=255)
gtcgAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTtct < 3:66477/149‑1 (MQ=255)
tcgAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCCCCGTACTCACTCCCGCGCAATAATTcctc < 4:459031/149‑1 (MQ=255)
tcgAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCACCGGGAGATCGGCATCCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTtctc < 4:346236/149‑1 (MQ=255)
gAGCAGGTCAGTGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCt > 2:781348/1‑149 (MQ=255)
gcgcGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACcatcat < 2:2148/149‑1 (MQ=255)
cgcgAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCatcatc < 2:74841/149‑1 (MQ=255)
gcgAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCg > 2:829238/1‑149 (MQ=255)
cgAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCgg > 2:850384/1‑149 (MQ=255)
aaaGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGc < 1:833579/149‑1 (MQ=255)
aaGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGcc < 3:273238/149‑1 (MQ=255)
tGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCAcgc < 3:399009/114‑1 (MQ=255)
tGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCAcgc > 4:399009/1‑114 (MQ=255)
ccTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGc > 1:654391/1‑149 (MQ=255)
ttCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCGATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGa > 4:508915/1‑149 (MQ=255)
aTTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGtt > 4:98298/1‑149 (MQ=255)
cATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCaa > 4:183487/1‑149 (MQ=255)
aTCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAg > 4:813075/1‑149 (MQ=255)
tcgtcgGGAGATCGGCATTCGCCGCGCATACCAACCGCACATTCCCCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCAGCGGTGCCGTAGCGAGTTCATCAAGa < 4:241699/149‑1 (MQ=255)
cGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGaa < 4:707583/149‑1 (MQ=255)
ccGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAAt < 1:468543/149‑1 (MQ=255)
ggAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGc < 4:327239/149‑1 (MQ=255)
aTCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTAc > 2:139891/1‑149 (MQ=255)
tCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTAcc > 1:154250/1‑149 (MQ=255)
aCCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGc > 3:715509/1‑101 (MQ=255)
aCCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGc < 4:715509/101‑1 (MQ=255)
aCCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCaaa < 3:813075/149‑1 (MQ=255)
ccAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAAt < 3:653029/149‑1 (MQ=255)
ccAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAAt > 2:149799/1‑149 (MQ=255)
cAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAAtc > 3:104969/1‑149 (MQ=255)
cAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAAtc > 1:685357/1‑149 (MQ=255)
gCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCt < 4:104969/149‑1 (MQ=255)
cacaTTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCt > 2:269748/1‑148 (MQ=255)
cacaTTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCt < 1:269748/148‑1 (MQ=255)
cacaTTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTg < 3:183487/149‑1 (MQ=255)
aTTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGAt > 1:765336/1‑149 (MQ=255)
aCCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACg > 4:640696/1‑149 (MQ=255)
cTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGtt < 3:98298/149‑1 (MQ=255)
agcgcgTTGGCGGCAGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGttttt > 3:391438/6‑149 (MQ=255)
gcgcgTTGGCGGCAGCCCACGCGCTACAGTTCCCCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGATCAAATCTCCCTGGATGACGTTTTTg > 2:34803/5‑149 (MQ=255)
gcgcgTTGGCGGCAGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTg > 4:77911/5‑149 (MQ=255)
aaTGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTg > 4:206862/1‑149 (MQ=255)
gTTGGCGGCAGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCa > 1:281978/1‑149 (MQ=255)
ttGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCAc > 4:109323/1‑149 (MQ=255)
gCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCTCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTcc > 3:576723/1‑125 (MQ=255)
gCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTcc < 4:576723/125‑1 (MQ=255)
cTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGt < 1:137782/149‑1 (MQ=255)
|
CTTTCGCGCTCGCGCAGTGGTGGCAGTTGTACAACATCAAAAGCCAGTCGGTCGAGCAGGTCAGCGCGAAAAGTGCCTTCATTGACCATCGCCGGGAGATCGGCATTCGTCGCGCATACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGT > NC_000913/1367362‑1367657
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
