Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F71 I0 R1
|
810 |
98.9 |
3562578 |
97.8% |
3484201 |
143.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,863,803 |
G→A |
10.4% |
intergenic (+37/‑47) |
gapA → / → yeaD |
glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,863,803 | 0 | G | A | 10.4%
| 282.9
/ 18.5
| 96 | intergenic (+37/‑47) | gapA/yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
| Reads supporting (aligned to +/- strand): ref base G (44/42); new base A (6/4); total (50/46) |
| Fisher's exact test for biased strand distribution p-value = 7.43e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 |
TAAAGCTGGTATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTGGTCGATC > NC_000913/1863655‑1863946
|
tAAAGCTGGTATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCg > 2:404935/1‑149 (MQ=255)
tAAAGCTGGTATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCg > 2:119841/1‑149 (MQ=255)
gCTGGTATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCg > 4:156618/1‑149 (MQ=255)
aTCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTC‑ttt < 1:250831/149‑1 (MQ=255)
aTCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTACTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑ttt < 4:410328/149‑1 (MQ=255)
gCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑tttttt > 1:825367/1‑149 (MQ=255)
gACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑ttttt > 4:382947/1‑139 (MQ=255)
gACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑ttttt < 3:382947/139‑1 (MQ=255)
gACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGAt > 2:642350/1‑149 (MQ=255)
gACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGAt > 1:405356/1‑149 (MQ=255)
aaCTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATaaa > 2:278064/1‑149 (MQ=255)
cTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAAt > 3:118403/1‑149 (MQ=255)
catGAACCTGATATCCTGGTACGACAACGAAACCGGCTACTCCAACAATGTTATGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAATAGCGACTTTGGTCGCTC‑TTTTTTTTACCTGATAAAATGaa < 2:573228/147‑1 (MQ=255)
cGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGaa < 4:827741/149‑1 (MQ=255)
tGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGt < 3:131783/149‑1 (MQ=255)
tGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGt < 3:38295/149‑1 (MQ=255)
aCTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTaaa < 1:500058/149‑1 (MQ=255)
aCTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTaaa > 1:745747/1‑149 (MQ=255)
cTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCACTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAg < 2:779911/149‑1 (MQ=255)
ggTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGa < 2:424905/149‑1 (MQ=255)
ggTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGa < 1:119841/149‑1 (MQ=255)
tCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGc > 2:486345/1‑149 (MQ=255)
tCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGc < 1:522092/149‑1 (MQ=255)
tGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACAATATGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTATAGGACTGCGTc > 4:269679/1‑149 (MQ=255)
ggTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCa < 1:250425/149‑1 (MQ=255)
gTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCAt < 2:825367/149‑1 (MQ=255)
aCGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTAGCTGATAAAATGAAGTTAAAGGACTGCGTCATGa < 3:824387/149‑1 (MQ=255)
gACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGAtt > 2:576988/1‑149 (MQ=255)
gACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGAtt > 3:393688/1‑149 (MQ=255)
aCAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTa > 2:142240/1‑149 (MQ=255)
cAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTaa < 2:431967/149‑1 (MQ=255)
aaCGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCa < 2:351222/142‑1 (MQ=255)
aaCGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCa > 1:351222/1‑142 (MQ=255)
gAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGaaa > 3:126622/1‑149 (MQ=255)
gAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGaaa < 1:101150/149‑1 (MQ=255)
cGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAAtttt > 3:650194/1‑149 (MQ=255)
ggTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAAttttt < 1:794164/149‑1 (MQ=255)
ggTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAAttttt < 1:584865/149‑1 (MQ=255)
ggTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAAttttt < 3:126995/149‑1 (MQ=255)
gTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTg < 1:789419/149‑1 (MQ=255)
tCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCtt < 2:236266/149‑1 (MQ=255)
tCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTC‑ttttta < 3:98154/92‑2 (MQ=37)
tCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTC‑ttttta > 4:98154/1‑91 (MQ=37)
caacaaAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTcc > 1:134586/1‑149 (MQ=255)
aacaaAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCg > 2:322693/1‑149 (MQ=255)
acaaAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTAc > 3:243318/1‑92 (MQ=255)
acaaAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTAc < 4:243318/92‑1 (MQ=255)
aaaGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTc > 2:546661/1‑149 (MQ=255)
aaaGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTc < 1:142240/149‑1 (MQ=255)
aaaGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTc < 2:269566/149‑1 (MQ=255)
aaGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCa < 2:540531/149‑1 (MQ=255)
ttCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCg > 4:494432/1‑149 (MQ=255)
cTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGaa < 1:285976/149‑1 (MQ=255)
cTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGaa < 2:405356/149‑1 (MQ=255)
ggACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACa > 3:208895/1‑149 (MQ=255)
gACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACaa > 3:126074/1‑149 (MQ=255)
ccTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTaaa < 3:76770/98‑1 (MQ=255)
ccTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAAt < 3:501973/149‑1 (MQ=255)
ccTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTC‑tttttag < 4:823293/76‑3 (MQ=25)
ccTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTC‑tttttag > 3:823293/1‑74 (MQ=25)
ccTGATCGATCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTaaa > 4:76770/1‑98 (MQ=255)
cTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGa < 2:751815/111‑1 (MQ=255)
cTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGa > 1:751815/1‑111 (MQ=255)
gATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAAtctc > 2:74817/1‑149 (MQ=255)
gATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAAtctc > 3:784513/1‑149 (MQ=255)
tCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGt > 3:368095/1‑149 (MQ=255)
aTCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGc < 1:118831/115‑1 (MQ=255)
aTCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGc > 2:118831/1‑115 (MQ=255)
ctcCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTC‑ttt < 1:281285/57‑1 (MQ=21)
ctcCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTC‑ttt > 2:281285/1‑57 (MQ=21)
tcCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGAt > 4:501652/1‑97 (MQ=255)
tcCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGAt < 3:501652/97‑1 (MQ=255)
tcCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTcc > 4:411129/1‑149 (MQ=255)
cAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcg > 4:388273/1‑149 (MQ=255)
aaaTAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgt > 4:424213/1‑149 (MQ=255)
tAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCcgtcgt > 4:824231/1‑149 (MQ=255)
ttGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAAc > 1:409867/1‑149 (MQ=255)
gaTGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGa < 1:141560/149‑1 (MQ=255)
gaTGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGa > 1:54706/1‑149 (MQ=255)
gaTGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGa < 2:134586/149‑1 (MQ=255)
gaTGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGa < 3:221744/149‑1 (MQ=255)
gaTGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑‑TTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGAt > 2:634755/1‑149 (MQ=255)
aTGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGAt < 1:404935/149‑1 (MQ=255)
tgtgATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGc < 2:479172/67‑1 (MQ=255)
tgtgATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGc > 1:479172/1‑67 (MQ=255)
gtgATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGa < 1:760509/149‑1 (MQ=255)
tgATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGAc < 3:304940/149‑1 (MQ=255)
agATCTCAAAAGAGCGACTTCGGCCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGAc > 2:716444/2‑149 (MQ=255)
taaaaaaaaGAGCGACCGAAGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCt > 4:330319/5‑149 (MQ=255)
aTCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCt > 2:66113/1‑149 (MQ=255)
aaaaaGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCAtt > 3:204265/1‑149 (MQ=255)
aaaaGAGCGACCGAAGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATtg > 2:780785/1‑149 (MQ=255)
aaaGAGCGACCGAAGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATtgt > 2:72183/1‑149 (MQ=255)
aaGAGCGACTTCGCACGATC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGTTTAAGAAAATTTTTGCCATTCAGGTCATCACACAAATCTCACCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATtgtg > 4:715109/1‑149 (MQ=255)
agagCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTgg > 3:878022/1‑149 (MQ=255)
agagCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTgg < 1:750917/149‑1 (MQ=255)
agCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTGGTc < 3:411129/149‑1 (MQ=255)
aCTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTGGTCGatc > 2:471120/1‑149 (MQ=255)
|
TAAAGCTGGTATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTC‑TTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTGGTCGATC > NC_000913/1863655‑1863946
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
