Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F71 I0 R1
|
810 |
98.9 |
3562578 |
97.8% |
3484201 |
143.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,982,500 |
T→C |
5.0% |
intergenic (‑113/+54) |
otsB ← / ← araH |
trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,982,500 | 0 | T | C | 5.0%
| 391.3
/ 6.9
| 119 | intergenic (‑113/+54) | otsB/araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (61/52); new base C (3/3); total (64/55) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.47e-01 |
Only 100 of 123 total aligned reads displayed.
GGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAA > NC_000913/1982352‑1982648
|
ggATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGt > 1:388887/1‑149 (MQ=255)
gATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGtt < 2:814150/149‑1 (MQ=255)
tAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTAt < 4:69351/149‑1 (MQ=255)
tAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTAt > 3:463274/1‑149 (MQ=255)
gTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATgg < 4:133406/149‑1 (MQ=255)
aGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGCCCGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGt < 2:309180/149‑1 (MQ=255)
ggggTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGtt < 3:215609/149‑1 (MQ=255)
ggggTTTCGGTAAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTGTACTGACATGTAAGTATAGACAGGGTGACGGGGGTAGACATTTGCAACGAAGAACAGCCAACCGTTATGGCGGtt < 1:733748/149‑1 (MQ=255)
gggTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTg > 3:781137/1‑149 (MQ=255)
ggTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGCCATAACGGTTgg < 4:111265/149‑1 (MQ=255)
gTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTAGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGCCATAACGGTTGGc < 2:74948/149‑1 (MQ=255)
tttCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTAt > 2:257760/1‑138 (MQ=255)
tttCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCt > 4:441007/1‑149 (MQ=255)
tttCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCt > 4:314465/1‑149 (MQ=255)
gTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTAtggt > 2:620159/1‑149 (MQ=255)
gTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑aaaa > 4:852639/1‑149 (MQ=255)
ttCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑aaaaa > 2:565494/1‑149 (MQ=255)
tCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑aacaaa < 1:771876/149‑1 (MQ=255)
tCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑aaaaaa < 4:781137/149‑1 (MQ=255)
tCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCt < 3:441007/149‑1 (MQ=255)
tCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCt > 2:511212/1‑149 (MQ=255)
cACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGGCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTa > 1:452955/1‑149 (MQ=255)
cccGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTaaa > 3:624534/1‑149 (MQ=255)
cccGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTaaa > 1:287767/1‑149 (MQ=255)
tcctccTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCa > 1:639299/1‑149 (MQ=255)
ctcctTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGa > 1:275132/1‑149 (MQ=255)
ctcctTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCAAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGGTAAATTGTTGCAGa > 1:608948/1‑149 (MQ=255)
tcctTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGaa > 4:226551/1‑149 (MQ=255)
tcctTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGaa > 1:307274/1‑149 (MQ=255)
ctTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATATACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAAc > 1:356310/1‑130 (MQ=255)
ctTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAAc < 2:356310/130‑1 (MQ=255)
ctTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGaaaa > 1:111754/1‑149 (MQ=255)
ttCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGaaaaa > 2:157222/1‑149 (MQ=255)
ttCTCTTTTCTTATTGTGTTCCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCTCCATTTGCAGCGAAGAACAGCGAACCGTAATGGCGGGTGACTATGGTGGG‑TAAAGACGCTAAGTTGGTGTAGaaaaa > 2:201551/1‑149 (MQ=255)
tctcTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGaaaaaa < 4:463274/149‑1 (MQ=255)
tctTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGc < 1:430760/149‑1 (MQ=255)
ttttCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAGCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCAt < 3:62446/149‑1 (MQ=255)
ttttCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCAt > 4:503681/1‑149 (MQ=255)
ttttCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCAt > 1:894933/1‑149 (MQ=255)
tCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAg < 1:157222/149‑1 (MQ=255)
ttATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGCCATAACGGTTgg > 4:452924/1‑102 (MQ=255)
tATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑aaaaaa > 2:526556/1‑117 (MQ=255)
tATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑aaaaaa < 1:526556/117‑1 (MQ=255)
tATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGaaa < 2:659798/149‑3 (MQ=255)
ttGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGt < 2:111754/149‑1 (MQ=255)
ttGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGt > 1:781390/1‑149 (MQ=255)
ttGTGTTGCGCAGAACGAGCTTTACAGACATGTAAGTATAGACAGTGTGTCGGGGGTCGCCATTTGCAACGAAGAACAGCCAACAGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGGATCAGACAGt > 4:252005/1‑149 (MQ=255)
tgtTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCg < 1:855887/149‑1 (MQ=255)
ttacgcAGAACGCGCTTTACAGACTTGTAAGTATAGACAGTGTGACGGGGATCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AACAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACCGTGCGtt > 2:351890/4‑149 (MQ=255)
tGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCACTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGttt < 3:708982/149‑1 (MQ=255)
gcgcAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTc < 2:94951/149‑1 (MQ=255)
aCGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttttt < 1:292209/149‑1 (MQ=255)
aCGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttttt > 3:315193/1‑149 (MQ=255)
aCGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttttt > 1:108487/1‑149 (MQ=255)
gcgcTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGc < 2:728403/149‑1 (MQ=255)
gcgcTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGc < 3:551720/149‑1 (MQ=255)
cgcTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCt < 3:150212/149‑1 (MQ=255)
gcTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCtt < 3:506245/149‑1 (MQ=255)
gcTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCtt < 2:387830/149‑1 (MQ=255)
aGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACgg > 2:533447/1‑149 (MQ=255)
gACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGt < 2:856312/149‑1 (MQ=255)
aTGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGa > 1:543944/1‑149 (MQ=255)
aTGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGa > 4:819648/1‑149 (MQ=255)
aTGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGa > 1:863252/1‑149 (MQ=255)
aaGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGAt < 3:286434/149‑1 (MQ=255)
tataGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCAc > 1:643731/1‑149 (MQ=255)
aGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGc > 2:95507/1‑149 (MQ=255)
gACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCcagcag < 3:503681/149‑1 (MQ=255)
gACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCcagcag < 1:533447/149‑1 (MQ=255)
gggggTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGAt > 1:162363/1‑149 (MQ=255)
gTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAg < 2:307274/149‑1 (MQ=255)
tCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGc > 2:775965/1‑149 (MQ=255)
tCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGc > 1:784077/1‑149 (MQ=255)
tttGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGaa > 2:781479/1‑149 (MQ=255)
tttGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGaa < 4:461414/149‑1 (MQ=255)
cAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCAc < 2:305917/149‑1 (MQ=255)
cAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCAc > 4:149609/1‑149 (MQ=255)
aaCGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACg > 1:391615/1‑149 (MQ=255)
aaCGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACg > 1:120385/1‑149 (MQ=255)
aaCGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTCTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACg > 3:680334/1‑149 (MQ=255)
gaagaaCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTAc > 1:528305/1‑149 (MQ=255)
taaCAGCCAACGGTTAGGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCCCTGCCAGCAGGATTAAGCCGCGAACCACGTACTgc > 2:199805/2‑149 (MQ=255)
gaaCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTgc < 2:894933/149‑1 (MQ=255)
gaaCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTgc > 4:826493/1‑149 (MQ=255)
gaaCAGCCAACCGTTATGGCGGTTGGCTATGGGGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTgc > 4:230046/1‑149 (MQ=255)
aCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGaa > 4:194863/1‑104 (MQ=255)
aCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGaa < 3:194863/104‑1 (MQ=255)
aGCCAACCGCCATAACGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGa > 4:39493/1‑149 (MQ=255)
ccAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTGGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGaaa < 3:629653/149‑1 (MQ=255)
ccAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGaaa < 4:624534/149‑1 (MQ=255)
cAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAg < 1:565494/149‑1 (MQ=255)
aaCCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAgg > 3:619704/1‑149 (MQ=255)
aaCCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAgg > 2:777084/1‑149 (MQ=255)
aCCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGga < 3:852639/149‑1 (MQ=255)
ccGTTATGGCGGTTGGCTATGGTGGGAAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGga < 3:224229/149‑1 (MQ=255)
ccGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGa > 4:73313/1‑98 (MQ=255)
ccGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGa < 3:73313/98‑1 (MQ=255)
gTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGaa < 1:683450/149‑1 (MQ=255)
ttATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGaaa < 3:447529/149‑1 (MQ=255)
ttATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGaaa < 3:230046/149‑1 (MQ=255)
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GGATAGTTCAGGGGTTTCGGTTAACGGTTCTGTCACCCGGTTCTCCTCCTTCTCTTTTCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCCGCGAACCACGTACTGCGCGAAAGGAGAAA > NC_000913/1982352‑1982648
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
