Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F71 I0 R1
|
810 |
98.9 |
3562578 |
97.8% |
3484201 |
143.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,279,708 |
A→T |
7.3% |
L18Q (CTG→CAG) |
bcr ← |
bicyclomycin/cysteine/sulfonamide efflux transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,279,708 | 0 | A | T | 7.3%
| 324.6
/ 12.3
| 95 | L18Q (CTG→CAG) | bcr | bicyclomycin/cysteine/sulfonamide efflux transporter |
| Reads supporting (aligned to +/- strand): ref base A (32/56); new base T (2/5); total (34/61) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.38e-01 |
CCGTAGATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTAAATCAGCATC > NC_000913/2279564‑2279853
|
ccGTAGATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCcagcag > 3:454866/1‑149 (MQ=255)
gTAGATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGc > 2:575642/1‑149 (MQ=255)
gATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCaa < 2:168122/149‑1 (MQ=255)
gATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCaa > 2:252079/1‑149 (MQ=255)
aTTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAg < 3:791981/149‑1 (MQ=255)
aTTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAg < 2:562359/149‑1 (MQ=255)
ttAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCTGCTGGCCatgt < 1:407508/149‑4 (MQ=255)
ttAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAgg > 2:778651/1‑149 (MQ=255)
ttAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTAATCTGCGTACTGCCCGCCGGTACGCCAAACGGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCTGGTGGCCatgt < 3:323314/149‑4 (MQ=255)
tAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCTGCTGGCCatgtt < 1:841487/149‑5 (MQ=255)
tAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGa < 3:47942/149‑1 (MQ=255)
cTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCTGCTGGCCatgttgat < 1:728157/149‑8 (MQ=255)
tGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATaaa < 1:778651/149‑1 (MQ=255)
ccccAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATaaaaa < 1:62552/149‑1 (MQ=255)
ccccAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATaaaaa < 4:237176/149‑1 (MQ=255)
ccccAACGCAAAGCCCAGAATATAAGTACTGAGGCTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATaaaaa < 4:201421/149‑1 (MQ=255)
ccAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACa > 1:623602/1‑149 (MQ=255)
cAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACaa < 1:479350/149‑1 (MQ=255)
cAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACaa > 1:68521/1‑149 (MQ=255)
aaCGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAAt > 1:493013/1‑149 (MQ=255)
aaCGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAAt > 3:839839/1‑149 (MQ=255)
aCGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATa < 4:449843/149‑1 (MQ=255)
aCGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATa < 4:657749/149‑1 (MQ=255)
aCGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATa < 3:369894/149‑1 (MQ=255)
cccAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGTAGGCCAAGGATAAAAACAATAGCAAacga < 1:117826/149‑1 (MQ=255)
cccAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAacga < 1:369431/149‑1 (MQ=255)
ccAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAacgac < 2:184164/149‑1 (MQ=255)
cAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCTGCTGGCCatgt < 4:660604/127‑4 (MQ=255)
cAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCTGCTGGCCatgt > 3:660604/1‑124 (MQ=255)
cAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAacgacg > 3:777789/1‑149 (MQ=255)
cAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAacgacg > 2:618285/1‑149 (MQ=255)
cAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAacgacg > 4:608465/1‑149 (MQ=255)
aaTATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAAt > 4:144907/1‑149 (MQ=255)
ataAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCt < 1:512168/149‑1 (MQ=255)
taAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTg > 1:292594/1‑149 (MQ=255)
tACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATTGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCgg < 3:452432/149‑1 (MQ=255)
tGAGGGTCATCTGCGGACTGCCCGCCGGTAGGCCAAACGGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGagtg < 3:116544/149‑1 (MQ=255)
gTCATCTGCGTACTACCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTcac > 3:67487/1‑149 (MQ=255)
aTCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAAc > 2:696870/1‑149 (MQ=255)
tGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACggg > 4:760322/1‑149 (MQ=255)
gCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGGAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGc < 3:39453/149‑1 (MQ=255)
cGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCgg > 2:422642/1‑133 (MQ=255)
cGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCgg < 1:422642/133‑1 (MQ=255)
gTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTc < 4:13217/149‑1 (MQ=255)
tACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTcc < 2:753918/149‑1 (MQ=255)
tACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGACAAGGATAAAAACAATAGCAAACGACGCATGCTGTCGGGTGGTCACAACGGGCTcc < 3:810499/149‑1 (MQ=255)
tGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGa < 4:189505/149‑1 (MQ=255)
gCCCGCCGATACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGaa > 1:118567/1‑149 (MQ=255)
cccGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGaaa < 2:426202/149‑1 (MQ=255)
cccGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGaaa < 1:429224/149‑1 (MQ=255)
cccGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGaaa < 2:266337/149‑1 (MQ=255)
cccGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGaaa < 2:493013/149‑1 (MQ=255)
ggTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCAtt < 2:717562/149‑1 (MQ=255)
gCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGaaaa < 4:533996/149‑1 (MQ=255)
gCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGaaaa < 2:86127/149‑1 (MQ=255)
gCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGaaaa > 2:403042/1‑149 (MQ=255)
gCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGaaaa < 1:27390/149‑1 (MQ=255)
ccAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCt > 3:826719/1‑109 (MQ=255)
ccAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCt < 4:826719/109‑1 (MQ=255)
aaaCTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGtt < 1:750599/149‑1 (MQ=255)
aCTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAg > 1:73111/1‑149 (MQ=255)
cTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAga > 1:617337/1‑149 (MQ=255)
gcgcTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAgacg > 1:752669/1‑149 (MQ=255)
tAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATttctt < 4:67487/149‑1 (MQ=255)
aGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATttcttc < 3:372001/149‑1 (MQ=255)
cgGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCa < 4:77342/149‑1 (MQ=255)
cgGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCa < 4:26305/149‑1 (MQ=255)
cgGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCa < 2:73111/149‑1 (MQ=255)
gggCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAg > 3:71043/1‑149 (MQ=255)
gCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGtt < 4:777789/149‑1 (MQ=255)
aGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTaa > 1:835559/1‑149 (MQ=255)
aCATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGa < 2:848656/149‑1 (MQ=255)
aCATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGa < 1:98526/149‑1 (MQ=255)
cATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGAc < 1:437064/149‑1 (MQ=255)
tatCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGa < 2:623602/149‑1 (MQ=255)
tCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGata > 1:71023/1‑149 (MQ=255)
aaTCGACAGCGGCATCAACATGGCCAGCAGGGCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATAtt > 2:884552/1‑149 (MQ=255)
aaTCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATAtt < 1:403042/149‑1 (MQ=255)
aTCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTc > 4:875006/1‑149 (MQ=255)
gACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCAcc > 4:357529/1‑149 (MQ=255)
aCAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCg < 4:454866/149‑1 (MQ=255)
aGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCggg < 2:426920/149‑1 (MQ=255)
gCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCgggg < 1:575642/149‑1 (MQ=255)
gCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAAAGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATGGCAAAGTTAGACGACGCAGGCAATTTCTTCTTCAGTTAACGTACGTTATTCACCgggg > 2:13213/1‑149 (MQ=255)
cATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGc < 4:375057/104‑1 (MQ=255)
cATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGc > 3:375057/1‑104 (MQ=255)
tCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTaaa < 1:645912/149‑1 (MQ=255)
tCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTaaa < 2:835559/149‑1 (MQ=255)
tCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTaaa < 3:86925/149‑1 (MQ=255)
aCATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTAAATCa > 2:105329/1‑149 (MQ=255)
aCATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTAAATCa < 4:189740/149‑1 (MQ=255)
cttGGCCTGCTGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTAAATCAg > 1:608898/3‑149 (MQ=255)
aTGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTAAATCAGc < 1:696870/149‑1 (MQ=255)
tGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTAAATCAGCa > 4:328615/1‑149 (MQ=255)
tGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTAAATCAGCa < 1:327051/149‑1 (MQ=255)
gCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTAAATCAGCATc < 3:156511/149‑1 (MQ=255)
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CCGTAGATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACGGGCTCCTGAAAGTCATTGAAAAGTTAGACGACGCTGGCAATTTCTTCTTCAGTTAACGGACGATATTCACCGGGGGCTAAATCAGCATC > NC_000913/2279564‑2279853
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
