Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F105 I0 R1
|
221 |
270.9 |
10031942 |
97.9% |
9821271 |
140.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,987,857 |
C→T |
5.9% |
intergenic (‑99/+16) |
yecJ ← / ← azuC |
DUF2766 family protein/acid‑inducible small membrane‑associated protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,987,857 | 0 | C | T | 5.9%
| 1041.3
/ 29.7
| 314 | intergenic (‑99/+16) | yecJ/azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| Reads supporting (aligned to +/- strand): ref base C (144/151); new base T (8/11); total (152/162) |
| Fisher's exact test for biased strand distribution p-value = 6.41e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
Only 100 of 314 total aligned reads displayed.
AACCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTGC > NC_000913/1987711‑1988003
|
aaCCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑Cgg > 3:864567/1‑149 (MQ=255)
aaCCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑Cgg > 3:1439020/1‑149 (MQ=255)
ccACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGTGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAg > 3:2407378/1‑149 (MQ=255)
ccACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAg < 2:1266171/149‑1 (MQ=255)
ccACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAg > 3:1558136/1‑149 (MQ=255)
cacaTCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGc < 2:672896/149‑1 (MQ=255)
acaTCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCa > 3:335747/1‑149 (MQ=255)
gAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGtttt > 1:1479644/1‑149 (MQ=255)
aaaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGGttttt < 4:2033134/149‑1 (MQ=255)
aaaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGttttt < 4:1113180/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACTGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGtttttt < 3:272633/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGtttttt < 1:1746714/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGtttttt < 4:279681/149‑1 (MQ=255)
aCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGGttttttt < 4:1507201/149‑2 (MQ=255)
aCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTg < 4:1893506/149‑1 (MQ=255)
cAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCTCCG‑GCAGGtttttttgt < 1:727166/149‑4 (MQ=255)
cAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGtttttt < 1:2267892/146‑1 (MQ=255)
aTTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTAt > 3:1995524/1‑149 (MQ=255)
cTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGa < 2:1019113/149‑1 (MQ=255)
tGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACTTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAACAACACCTGC‑CGGAGCAGGTTTTTGGTTATCCGaa < 4:140410/149‑1 (MQ=255)
tGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGaa < 4:1040495/149‑1 (MQ=255)
aTTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGt > 2:1162520/1‑133 (MQ=255)
gCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGc > 3:744206/1‑149 (MQ=255)
tGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTAc > 2:1814854/1‑149 (MQ=255)
tGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTAc < 1:1208676/149‑1 (MQ=255)
tGGGAAATAGTAAATTCCTGATAGCATTGTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATACACCGTAATCAGGACACAAAAAAACCTGC‑CAGAGCAGGTTTTTTGTTATGGGAACATATTGCCAGGCGGTAc < 4:744206/149‑1 (MQ=255)
aTCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCttt < 1:1973983/149‑1 (MQ=255)
gTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGaa < 4:2169594/149‑1 (MQ=255)
tCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCtt > 2:300318/1‑149 (MQ=255)
cTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACat < 4:1080599/117‑1 (MQ=255)
cTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACat > 3:1080599/1‑117 (MQ=255)
cTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGc > 3:1880710/1‑149 (MQ=255)
tGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCa > 4:2417573/1‑149 (MQ=255)
tAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAg < 4:1572722/93‑1 (MQ=255)
tAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATa < 3:408389/149‑1 (MQ=255)
aTTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTa < 4:1005287/100‑1 (MQ=255)
aTTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTa > 1:1121471/1‑149 (MQ=255)
aTTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTa > 1:2041562/1‑149 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGtttttt < 2:464381/95‑1 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATc < 4:2326936/101‑1 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCATTAGTTAt > 2:1360530/1‑149 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGt < 2:908630/146‑1 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAt > 1:1594530/1‑149 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAt > 1:2134500/1‑149 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAt > 1:528820/1‑149 (MQ=255)
tttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAtt < 4:2097413/149‑1 (MQ=255)
ttcaaaTCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAATg < 3:1650925/146‑1 (MQ=255)
ttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTg < 3:1715890/149‑1 (MQ=255)
ttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTg < 3:1903447/149‑1 (MQ=255)
gAAAGCCGTTATAGTAGTGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGaa < 4:2407378/149‑1 (MQ=255)
gAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGaa < 4:1326305/149‑1 (MQ=255)
ttATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGT‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACttt > 4:174350/1‑149 (MQ=255)
tagtagCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCa < 4:864567/149‑1 (MQ=255)
tagtagCGACCTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCa < 2:2299397/149‑1 (MQ=255)
tagCAACTTCACATCTTCAGCGATAGTCACATCCACCGTTATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATGGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGa < 1:1655384/149‑1 (MQ=255)
gCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGa < 1:2187677/64‑1 (MQ=255)
gCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGa > 2:2187677/1‑64 (MQ=255)
cGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGAttt < 3:1978009/149‑1 (MQ=255)
ttCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGaa < 2:1291552/80‑1 (MQ=255)
tCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTgcgc > 1:345860/1‑149 (MQ=255)
cacaTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCa > 1:1331493/1‑149 (MQ=255)
acaTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGtttttt > 2:1729467/1‑67 (MQ=255)
acaTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAg > 3:1479183/1‑149 (MQ=255)
acaTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAg > 3:485334/1‑149 (MQ=255)
caTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGt > 1:2130452/1‑149 (MQ=255)
aTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGAtttt < 2:2018680/141‑1 (MQ=255)
aTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGtt > 3:2208032/1‑149 (MQ=255)
aTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGtt < 3:1518885/149‑1 (MQ=255)
cTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTc < 2:934840/149‑1 (MQ=255)
ttCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGGttttttt > 1:973511/1‑62 (MQ=25)
gCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATcgc > 1:2392758/1‑149 (MQ=255)
gagaGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCgg < 3:1755063/146‑1 (MQ=255)
gATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCgg < 1:931737/149‑1 (MQ=255)
aTAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCt > 1:434678/1‑97 (MQ=255)
tCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATAtt > 2:98239/1‑67 (MQ=255)
tCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGAtttt < 2:411364/127‑1 (MQ=255)
aTCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGAc < 4:1697217/149‑1 (MQ=255)
aCCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCAtt > 4:1872942/1‑149 (MQ=255)
gTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGt < 1:1791373/149‑1 (MQ=255)
tcaGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTtata < 4:485334/149‑1 (MQ=255)
ggACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAg < 1:1048489/149‑1 (MQ=255)
ggACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAg > 4:1755160/1‑149 (MQ=255)
acaAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgtgt > 4:720098/1‑149 (MQ=255)
acaAAAAAACATGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgtgt > 4:1615076/1‑149 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATa > 2:2131662/1‑89 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGtt < 2:1113331/111‑1 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCAttt > 1:1924048/1‑134 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCAttt < 2:1924048/134‑1 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTa > 4:1459946/1‑149 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTa > 2:2065703/1‑149 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTa > 4:963470/1‑149 (MQ=255)
aaaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCAGACCATTTGTTATACAGGTGTTAt > 2:1627672/1‑149 (MQ=255)
aaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTc > 1:2490258/1‑93 (MQ=255)
aaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTc < 2:2490258/93‑1 (MQ=255)
aaaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTAtt > 4:398375/1‑149 (MQ=255)
aaaaCCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTg > 1:862691/1‑149 (MQ=255)
ccTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCCCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCtt < 2:745338/149‑1 (MQ=255)
gC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCAt > 1:286320/1‑105 (MQ=255)
gC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTgc < 4:2460020/149‑1 (MQ=255)
gC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTgc < 3:1322224/149‑1 (MQ=255)
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AACCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGGTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTGC > NC_000913/1987711‑1988003
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
