Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F25 I0 R2
|
821 |
102.6 |
3645220 |
97.9% |
3568670 |
140.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,520,585 |
C→T |
8.1% |
D108D (GAC→GAT) ‡ |
mcbR → |
colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,520,585 | 0 | C | T | 8.1%
| 342.5
/ 16.4
| 111 | D108D (GAC→GAT) ‡ | mcbR | colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
| Reads supporting (aligned to +/- strand): ref base C (53/49); new base T (5/4); total (58/53) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.64e-01 |
Only 100 of 112 total aligned reads displayed.
TTTCGGTGAATGCGCTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTGAGATGATTGAG > NC_000913/1520437‑1520729
|
tttCGGTGAATGCGCTTTCTGTCGCACCTGCACAAGCATTTACTGTTCCGGAAGTGGGGAAAAGTCAATTAGACGACAGCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGGTCTGGCTGTTGAAAACGTCACCCCGCAAGA‑c > 3:757193/1‑149 (MQ=255)
ggTGAATGCGCTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCtt > 2:364710/1‑148 (MQ=255)
gTGAATGCGCTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGc < 3:682771/149‑1 (MQ=255)
tGCGCTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGG‑TCTTGCggggt < 3:272970/149‑4 (MQ=255)
gcgcTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAAc > 2:421255/1‑148 (MQ=255)
cgcTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGG‑TCTTGCggggtga < 3:859961/149‑6 (MQ=255)
cgcTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACt < 2:92615/148‑1 (MQ=255)
gcTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTcc > 3:531480/1‑149 (MQ=255)
tttCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCa < 2:765271/148‑1 (MQ=255)
tttCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAg < 4:242257/149‑1 (MQ=255)
tttCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAg > 4:562153/1‑149 (MQ=255)
cACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTACTc > 3:132526/1‑149 (MQ=255)
ccTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCga < 4:339465/149‑1 (MQ=255)
ccTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCg < 1:421255/148‑1 (MQ=255)
cacaAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGaa > 1:733676/1‑148 (MQ=255)
caAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAAt > 2:109264/1‑148 (MQ=255)
aaGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAg < 4:840866/131‑1 (MQ=255)
aaGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAg > 3:840866/1‑131 (MQ=255)
aaGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAAtt < 1:109264/148‑1 (MQ=255)
gCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTAca < 3:16435/149‑1 (MQ=255)
gCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTAca < 4:549185/149‑1 (MQ=255)
aTTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTAcagc < 4:531480/149‑1 (MQ=255)
tACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAgg < 3:163126/149‑1 (MQ=255)
aCAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAgg < 2:733676/148‑1 (MQ=255)
gTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAAtt > 1:873167/1‑137 (MQ=255)
gTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAAtt < 2:873167/137‑1 (MQ=255)
gAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCGGGCGCAAGaaaa > 3:351773/1‑149 (MQ=255)
tGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGaa < 3:731525/104‑1 (MQ=255)
ggggAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGaaa < 1:807821/143‑1 (MQ=255)
ggggAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGaaa > 2:807821/1‑143 (MQ=255)
ggAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGa > 1:539612/1‑148 (MQ=255)
tCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAAc > 4:743222/1‑149 (MQ=255)
aTTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTc > 3:571103/1‑106 (MQ=255)
aTTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTc < 4:571103/106‑1 (MQ=255)
taagcGAAATCCATCCGATCCCCCAAGGACTGGAATTAATGGGAAGTGCTTTGGGTGTTGAAAACCCCCCCCCGGCAGACCCTGGCGAAACT‑CAGGAATTGGCTGAAAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAAt < 1:530129/144‑1 (MQ=255)
tAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAAt < 1:414784/148‑1 (MQ=255)
aGACGAAATCACTCGGATCCGCTACGAACTCGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CATTGCGGAACTCCAGGAATTGCTCGAGATATTACAGCAGGCGCAAGAAAAGGTCGACATGGAACAAATCa < 4:757193/149‑1 (MQ=255)
gACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCa < 2:375675/148‑1 (MQ=255)
gAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTaa < 4:622524/149‑1 (MQ=255)
aaaTCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTaa > 2:726657/1‑148 (MQ=255)
aaaTCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTaa > 2:349878/1‑148 (MQ=255)
aatcaatcGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATg > 3:400676/1‑149 (MQ=255)
caatcGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTaa > 4:137206/1‑149 (MQ=255)
atcGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTaaa < 2:792329/148‑1 (MQ=255)
atcGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTaaa > 1:449872/1‑148 (MQ=255)
atcGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAAc > 3:303264/1‑149 (MQ=255)
tcGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGG‑TCTTGCggggt < 3:793326/77‑4 (MQ=255)
tcGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGG‑TCTTGCggggt > 4:793326/1‑74 (MQ=255)
cGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGCCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACa > 2:427727/1‑148 (MQ=255)
gATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGc > 4:150235/1‑86 (MQ=255)
ccGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAt > 4:341464/1‑149 (MQ=255)
cTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTc < 3:562153/149‑1 (MQ=255)
aCGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCg > 2:799045/1‑148 (MQ=255)
aCGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCACGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCg < 1:587950/148‑1 (MQ=255)
gAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCtt > 4:245652/1‑149 (MQ=255)
aCTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAg > 4:835030/1‑149 (MQ=255)
tGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCTCCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGgcgc < 4:623597/93‑1 (MQ=255)
tGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGgcgc > 3:623597/1‑93 (MQ=255)
gAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGAt > 3:24666/1‑149 (MQ=255)
gAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGAt > 4:507623/1‑149 (MQ=255)
aaTTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTaa < 2:15064/126‑1 (MQ=255)
aaTTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTaa > 1:15064/1‑126 (MQ=255)
aaTTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGAt < 1:349878/148‑1 (MQ=255)
aTTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGAtt > 1:631313/1‑148 (MQ=255)
ttAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGTCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGa > 3:855314/1‑145 (MQ=255)
ttAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGAc < 1:875332/102‑1 (MQ=255)
ttAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGAc > 2:875332/1‑102 (MQ=255)
ttAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGa < 4:855314/145‑1 (MQ=255)
ttAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGAttt > 2:278261/1‑148 (MQ=255)
ttAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTa > 3:439147/1‑149 (MQ=255)
aaTGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGAttt > 3:258781/1‑146 (MQ=255)
aaTGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGAttt < 4:258781/146‑1 (MQ=255)
tGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTatca > 2:310067/1‑148 (MQ=255)
tGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTatca > 1:240982/1‑148 (MQ=255)
cAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGc < 4:439147/149‑1 (MQ=255)
ggCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGc < 4:100363/149‑1 (MQ=255)
ggCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGATCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATg > 2:297413/1‑148 (MQ=255)
gCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGcc > 3:881332/1‑149 (MQ=255)
gTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCa < 1:115043/148‑1 (MQ=255)
gTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCa > 2:453920/1‑148 (MQ=255)
ttGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATAAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCAt < 2:539612/148‑1 (MQ=255)
tGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTaa > 1:34333/1‑96 (MQ=255)
tGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTaa < 2:34333/96‑1 (MQ=255)
gAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCt > 4:870714/1‑149 (MQ=255)
aaaaCCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCt > 2:169854/1‑148 (MQ=255)
cTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCtgtgtg < 1:726657/148‑1 (MQ=255)
cTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTga < 3:811156/149‑1 (MQ=255)
cTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTga > 4:235234/1‑149 (MQ=255)
tCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTgag > 3:607865/1‑149 (MQ=255)
cACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTgaga < 3:137206/149‑1 (MQ=255)
cACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTgag < 1:310067/148‑1 (MQ=255)
ttccGCAAGG‑TCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACa > 4:59896/3‑69 (MQ=255)
ttccGCAAGG‑TCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACa < 3:59896/67‑1 (MQ=255)
ttccGCAAGG‑TCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTGAgat > 1:667715/3‑148 (MQ=255)
tccGCAAGG‑TCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTGAgatg > 1:299731/2‑148 (MQ=255)
ccGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTGAgatgat < 4:79939/149‑1 (MQ=255)
cGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTGAgatgat < 1:397315/148‑1 (MQ=255)
aGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTga > 2:742457/1‑138 (MQ=255)
aGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTga < 1:742457/138‑1 (MQ=255)
aGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTGAGATGATTGAg < 1:867442/148‑1 (MQ=255)
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TTTCGGTGAATGCGCTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGA‑CCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTGAGATGATTGAG > NC_000913/1520437‑1520729
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
