Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F25 I0 R2
|
821 |
102.6 |
3645220 |
97.9% |
3568670 |
140.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,541,077 |
G→C |
8.0% |
A505G (GCC→GGC) |
narZ ← |
nitrate reductase 2 (NRZ), alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,541,077 | 0 | G | C | 8.0%
| 299.3
/ 15.2
| 87 | A505G (GCC→GGC) | narZ | nitrate reductase 2 (NRZ), alpha subunit |
| Reads supporting (aligned to +/- strand): ref base G (41/39); new base C (4/3); total (45/42) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.12e-01 |
GTTCATGTCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGTTTTTAACGGG > NC_000913/1540932‑1541225
|
gTTCATGTCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTg > 4:661644/1‑149 (MQ=255)
tCATGTCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTggg < 4:177074/149‑1 (MQ=255)
aTGTCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGTGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTgggg > 1:790479/1‑148 (MQ=255)
tGTCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGgtg < 3:862493/149‑1 (MQ=255)
tGTCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGgt > 2:750177/1‑148 (MQ=255)
gTCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGgtgt > 4:206809/1‑149 (MQ=255)
gTCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGCCTGGGgtg < 2:371756/148‑1 (MQ=255)
tCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGgtgt > 2:535418/1‑148 (MQ=255)
tCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGCCTGGGgtga < 2:272301/148‑2 (MQ=255)
aTGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACgg > 4:800744/1‑149 (MQ=255)
gtgATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGtt < 3:847322/149‑1 (MQ=255)
tgATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGttt > 3:228478/1‑149 (MQ=255)
aTACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTg < 1:13701/148‑1 (MQ=255)
aTACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTg > 2:409693/1‑148 (MQ=255)
aTACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTg < 2:289548/148‑1 (MQ=255)
tACCAGCGGTTAACACCTGCGCCGAGGATAATCATCCAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGAt < 3:800744/149‑1 (MQ=255)
cAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTc > 3:658627/1‑149 (MQ=255)
cAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTc > 4:76574/1‑149 (MQ=255)
cAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGCCTgg > 1:189379/1‑131 (MQ=255)
cAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGCCTgg < 2:189379/131‑1 (MQ=255)
gTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAg < 4:73383/149‑1 (MQ=255)
ttAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTAc < 1:83321/132‑1 (MQ=255)
ttAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTAc > 2:83321/1‑132 (MQ=255)
tAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTaa < 3:206809/149‑1 (MQ=255)
tAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTa > 1:874736/1‑148 (MQ=255)
ccTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCttt < 3:76574/149‑1 (MQ=255)
ccTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCtt > 1:386333/1‑148 (MQ=255)
ccTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCtt < 1:750177/148‑1 (MQ=255)
cTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCttt < 2:845015/148‑1 (MQ=255)
gATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGtttt > 4:332048/1‑149 (MQ=255)
aTAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGtttt < 2:386333/148‑1 (MQ=255)
aTAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑c < 3:831081/149‑1 (MQ=255)
aaTCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CAt < 3:684141/149‑1 (MQ=255)
tcatcGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACACCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATc < 2:783686/148‑1 (MQ=255)
atcGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCTAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCtt < 1:596656/148‑1 (MQ=255)
atcGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCtt < 1:409693/148‑1 (MQ=255)
atcGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCtt < 1:549044/148‑1 (MQ=255)
cGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTcc > 1:757474/1‑148 (MQ=255)
cgcCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGccc < 4:90401/149‑1 (MQ=255)
aTGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGa < 2:431503/148‑1 (MQ=255)
aTGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGAt > 3:139012/1‑149 (MQ=255)
tGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGAt < 2:757474/148‑1 (MQ=255)
gggCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAg > 4:510044/1‑99 (MQ=255)
gggCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAg < 3:510044/99‑1 (MQ=255)
tATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGcc < 4:228478/149‑1 (MQ=255)
aTCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCa < 4:139012/149‑1 (MQ=255)
ggCAAATTCACGGGCGATGGTTTCAATATACTGGTGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTa > 4:301004/1‑149 (MQ=255)
ggCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGt < 1:123572/79‑1 (MQ=255)
ggCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGt > 2:123572/1‑79 (MQ=255)
gCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTAc > 4:713404/1‑149 (MQ=255)
cAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATGCGCCAGTAc > 1:7250/1‑148 (MQ=255)
aTTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCaa < 2:874736/148‑1 (MQ=255)
aCGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCAt > 3:196505/1‑149 (MQ=255)
ggCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTc < 1:63615/75‑1 (MQ=255)
ggCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTc > 2:63615/1‑75 (MQ=255)
ggCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATaaa < 4:649495/149‑1 (MQ=255)
ggCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATaaa > 4:646429/1‑149 (MQ=255)
gATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGc > 3:24083/1‑149 (MQ=255)
ggTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGa < 4:481445/149‑1 (MQ=255)
gTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGac < 3:307782/149‑1 (MQ=255)
atatACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCgg > 3:148119/1‑149 (MQ=255)
tataCTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCgg > 2:353426/1‑148 (MQ=255)
tataCTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGa > 3:143541/1‑149 (MQ=255)
taCTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACa < 3:431890/149‑1 (MQ=255)
tGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAgg > 2:55656/1‑148 (MQ=255)
tGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAgg > 1:216893/1‑148 (MQ=255)
ggCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATaa > 1:367464/1‑128 (MQ=255)
ggCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATaa < 2:367464/128‑1 (MQ=255)
gcgcGGCCCGCC‑GTAATTTGCTCCCCCCCGGCTGGGGGGTAAGGTTTTGTTTCAGCCGTAA‑CTTTCGGCATGTTTTCCATC‑TCCAGCCCGGCAATGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGtt < 4:713376/149‑1 (MQ=255)
gcgcGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGgtgt < 4:658627/149‑1 (MQ=255)
gcgcGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGAACACCGGACAGgtg < 2:790479/148‑1 (MQ=255)
cGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATc > 2:767201/1‑148 (MQ=255)
gCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGa < 3:661644/149‑1 (MQ=255)
tAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTaa < 1:487209/148‑1 (MQ=255)
aaccgtacACCCCAGCCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGt > 4:906794/8‑149 (MQ=255)
tttGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCTAGGCCGTAATTCGCCAGTACCAAATCATAATCGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTc > 4:672775/1‑149 (MQ=255)
gtacACCCCAGCCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAg > 1:624977/4‑148 (MQ=255)
tacACCCCAGCCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGt > 4:253327/3‑149 (MQ=255)
tCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGtt > 4:713551/1‑149 (MQ=255)
tCACCCCAGGCTAGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGtt > 4:567001/1‑149 (MQ=255)
cACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGtt > 2:282092/1‑148 (MQ=255)
cACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGtt > 2:806825/1‑148 (MQ=255)
aCCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGtttt > 4:643805/1‑149 (MQ=255)
ccccAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGttttt > 4:720911/1‑149 (MQ=255)
ccccAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGtttt > 1:97983/1‑148 (MQ=255)
ccAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGTTTTTaa < 3:713404/149‑1 (MQ=255)
ccAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGTTTTTa > 2:10537/1‑148 (MQ=255)
ggCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGTTTTTAACg < 2:216893/148‑1 (MQ=255)
gCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGTTTTTAACggg < 3:301004/149‑1 (MQ=255)
|
GTTCATGTCCATGTGATACCAGTGGTTAACACCTGCGCCGAGGATAATCATCGAGCGCCCATGCGTTTTATGGGCGGTATCGGCAAATTCACGGGCGATGGTTTCAATATACTGGCGCGGCACGCCGGTAATTTGCTCACCCCAGGCTGGGGTGTACGGTTTGATTTCAG‑CGTAATCTTTCGCACTGTTTT‑CATCTTCCAGCCCGCGATCGAGGCCGTAATTCGCCAGTACCAAATCATAAACGCTGACCACCGGACAGGTGTTGCCATCGACTAACGTCAGGTTTTTAACGGG > NC_000913/1540932‑1541225
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
