Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F25 I0 R2
|
821 |
102.6 |
3645220 |
97.9% |
3568670 |
140.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,698,589 |
C→A |
7.8% |
A198S (GCA→TCA) ‡ |
malI ← |
transcriptional repressor of Mal regulon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,698,589 | 0 | C | A | 7.8%
| 439.7
/ 18.8
| 126 | A198S (GCA→TCA) ‡ | malI | transcriptional repressor of Mal regulon |
| Reads supporting (aligned to +/- strand): ref base C (54/62); new base A (3/7); total (57/69) |
| Fisher's exact test for biased strand distribution p-value = 5.10e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 126 total aligned reads displayed.
CACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAA > NC_000913/1698445‑1698731
|
cACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACgg < 3:152016/149‑1 (MQ=255)
cACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACg < 1:285200/148‑1 (MQ=255)
cACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACg < 2:62323/148‑1 (MQ=255)
tGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGtt > 4:111846/1‑149 (MQ=255)
aTGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTaa < 4:716812/149‑1 (MQ=255)
aTGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTaa < 4:212378/149‑1 (MQ=255)
aTGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTGCAGAACGGGttg < 2:206346/148‑2 (MQ=255)
aTGGTCGGGTTATGACGTAAAAGCGCCATGATAGCTTCCGCGGCTTGCTTCCGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTa < 1:404971/148‑1 (MQ=255)
tGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAAt < 3:766199/149‑1 (MQ=255)
tGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTGCAGAACGGGttggg < 4:401361/149‑4 (MQ=255)
ggTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTGCAGAACGGGttgggg < 4:874462/149‑5 (MQ=255)
gTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATg < 1:131846/148‑1 (MQ=255)
tCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGa > 2:791494/1‑148 (MQ=255)
tCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAg < 4:37192/149‑1 (MQ=255)
tGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACttt < 2:18345/148‑1 (MQ=255)
tGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTg < 4:547540/149‑1 (MQ=255)
aCGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGc < 4:792557/148‑1 (MQ=255)
aCGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGc > 3:792557/1‑148 (MQ=255)
cGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGcc < 2:502241/148‑1 (MQ=255)
gTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACgg < 3:359808/128‑1 (MQ=255)
gTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACgg > 4:359808/1‑128 (MQ=255)
aaaGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTccc > 3:557382/1‑149 (MQ=255)
gcCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCcgagcca > 3:633579/1‑149 (MQ=255)
gcCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCccagcca < 3:748663/149‑1 (MQ=255)
ccGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCccagccag < 4:14897/149‑1 (MQ=255)
cGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAgg < 3:862343/149‑1 (MQ=255)
gTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAgg > 1:268682/1‑148 (MQ=255)
gTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGc < 3:848081/149‑1 (MQ=255)
aGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATcc < 4:711758/149‑1 (MQ=255)
gCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCccagccag < 4:876906/141‑1 (MQ=255)
ttCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCt > 3:269060/1‑149 (MQ=255)
ccGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGa < 4:402211/149‑1 (MQ=255)
cgcgGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCATCCAGGCGATCCGCTGa < 2:714886/148‑1 (MQ=255)
tgcttCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTaa < 2:614621/104‑1 (MQ=255)
tgcttCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCAtt < 3:402958/149‑1 (MQ=255)
tgcttCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCAt < 1:791494/148‑1 (MQ=255)
gctggAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATg < 2:268682/148‑1 (MQ=255)
ctggAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATga < 2:764156/148‑1 (MQ=255)
gAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATg < 3:854482/149‑1 (MQ=255)
gTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCt < 1:544893/148‑1 (MQ=255)
tGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTc > 1:101736/1‑148 (MQ=255)
gCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATg < 2:770509/89‑1 (MQ=255)
gCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATg > 1:770509/1‑89 (MQ=255)
cACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCg < 2:248376/148‑1 (MQ=255)
aCTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTGCAGAACGGGttg > 1:621184/1‑83 (MQ=255)
aCTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTGCAGAACGGGttg < 2:621184/84‑2 (MQ=255)
cTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACg < 1:418327/78‑1 (MQ=255)
cTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACg > 2:418327/1‑78 (MQ=255)
cTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTc > 1:260792/1‑148 (MQ=255)
ccAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTcaa > 2:914866/1‑148 (MQ=255)
ccAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTcaa < 1:350399/148‑1 (MQ=255)
aaCACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATgag > 1:532990/1‑134 (MQ=255)
aaCACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATgag < 2:532990/134‑1 (MQ=255)
aaCACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGAt > 1:666492/1‑136 (MQ=255)
aaCACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGAt < 2:666492/136‑1 (MQ=255)
aaCACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTcaacaa > 3:402341/1‑149 (MQ=255)
cacCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACt < 3:143447/149‑1 (MQ=255)
acCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACtg > 4:114457/1‑149 (MQ=255)
acCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACtg > 3:685872/1‑149 (MQ=255)
ccAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTc < 4:445742/139‑1 (MQ=255)
ccAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTc > 3:445742/1‑139 (MQ=255)
cAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCa < 4:414797/117‑1 (MQ=255)
cAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACtgtg > 2:12963/1‑148 (MQ=255)
cAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACtgtg > 1:177246/1‑148 (MQ=255)
aaTCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCa > 3:459996/1‑149 (MQ=255)
aTCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAg > 3:8323/1‑149 (MQ=255)
tGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCa < 2:3578/148‑1 (MQ=255)
gAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCAtg > 4:387712/1‑149 (MQ=255)
aaaCGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCAtgt > 4:573955/1‑149 (MQ=255)
aaCGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCAtgtt < 4:254558/149‑1 (MQ=255)
aaCGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCAt < 4:323227/146‑1 (MQ=255)
aCGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCAtgttg > 3:603256/1‑149 (MQ=255)
gCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTcc < 4:459996/149‑1 (MQ=255)
cAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTcc < 2:708587/148‑1 (MQ=255)
ggCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCggg < 3:111846/149‑1 (MQ=255)
cAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTc > 3:280409/1‑112 (MQ=255)
cAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTc < 4:280409/112‑1 (MQ=255)
aaaTTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGa > 1:762517/1‑148 (MQ=255)
ttAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGt < 1:633381/148‑1 (MQ=255)
gtagAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCa > 3:640469/1‑149 (MQ=255)
agagTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCaa < 1:821438/148‑1 (MQ=255)
agagTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCaa > 1:749596/1‑148 (MQ=255)
agagTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAAc > 4:105932/1‑149 (MQ=255)
gCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAAcatcat < 1:290613/148‑1 (MQ=255)
cacaATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACatcatc > 1:539076/1‑148 (MQ=255)
caATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCaa > 1:548652/1‑148 (MQ=255)
aaTAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAg < 2:539756/148‑1 (MQ=255)
aGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATaa < 4:146445/149‑1 (MQ=255)
gCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAAc > 4:369339/1‑149 (MQ=255)
cccccAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAAc < 1:696633/148‑1 (MQ=255)
ccccAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTg > 3:169203/1‑149 (MQ=255)
cattaaCCCGTGCAGAACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACt > 1:393193/5‑148 (MQ=255)
cattaaCCCGTGCAGAACGAGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTcaacaa < 1:646282/90‑1 (MQ=255)
cattaaCCCGTGCAGAACGAGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTcaacaa > 2:646282/5‑94 (MQ=255)
cccAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCa > 3:71424/1‑107 (MQ=255)
cccAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCa < 4:71424/107‑1 (MQ=255)
cccAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTg > 1:208812/1‑148 (MQ=255)
cAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGc > 2:828168/1‑148 (MQ=255)
cccGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACgg > 3:408811/1‑149 (MQ=255)
cGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGa > 3:463555/1‑149 (MQ=255)
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CACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAA > NC_000913/1698445‑1698731
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
