Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F9 I0 R1
|
1164 |
192.0 |
7567036 |
97.0% |
7340024 |
130.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
874,628:1 |
+G |
5.5% |
coding (1650/2349 nt) |
yliE → |
putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 874,628 | 1 | . | G | 5.5%
| 494.2
/ 22.4
| 109 | coding (1650/2349 nt) | yliE | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| Reads supporting (aligned to +/- strand): ref base . (52/51); new base G (3/3); total (55/54) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.52e-01 |
Only 100 of 112 total aligned reads displayed.
CGATTTCCAGTATCCGTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCAATGAGCTGGGTTATCAGATTATTAAAA > NC_000913/874480‑874776
|
cGATTTCCAGTATCCGTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATc < 2:1114790/149‑1 (MQ=255)
tttCCAGTATCCGTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGTGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑Gtt < 1:1223219/149‑1 (MQ=255)
aGTATCCGTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGatat < 1:970327/149‑1 (MQ=255)
gTATCCGTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATAtt > 1:945190/1‑149 (MQ=255)
gTATCCGTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAA‑CGATCGGTTGat < 3:450218/146‑1 (MQ=255)
gTATCCGTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAA‑CGATCGGTTGat > 4:450218/1‑146 (MQ=255)
tCCGTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAac < 2:395716/149‑1 (MQ=255)
gTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGGAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGatat < 4:1492670/142‑1 (MQ=255)
gTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGGAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGatat > 3:1492670/1‑142 (MQ=255)
gTGACCATACGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACAcc > 4:1800409/1‑149 (MQ=255)
atatGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGcc > 3:1359290/1‑149 (MQ=255)
tatGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCa > 3:1824733/1‑149 (MQ=255)
ttCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCt > 4:896155/1‑149 (MQ=255)
ctcAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTgg < 2:945190/149‑1 (MQ=255)
tcAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTggg < 1:1081618/149‑1 (MQ=255)
tcAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTggg > 2:1203823/1‑149 (MQ=255)
tcAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTggg > 4:787269/1‑149 (MQ=255)
agagTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGgcg > 2:1354448/1‑149 (MQ=255)
tttATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGa > 3:724663/1‑149 (MQ=255)
ttATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAg < 3:787269/149‑1 (MQ=255)
ttCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGtt < 3:896155/149‑1 (MQ=255)
gtgATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGc < 1:1203823/149‑1 (MQ=255)
tgaCGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGtt > 2:62050/1‑149 (MQ=255)
tgaCGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGtt < 1:1354448/149‑1 (MQ=255)
aCGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTGATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTgg < 4:1244752/149‑1 (MQ=255)
cgcgAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTggg < 1:281329/149‑1 (MQ=255)
gcgAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTaa < 1:381801/107‑1 (MQ=255)
gcgAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTaa > 2:381801/1‑107 (MQ=255)
gcgAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCgcgc < 2:1542799/116‑1 (MQ=255)
gcgAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCgcgc > 1:1542799/1‑116 (MQ=255)
gAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAac < 4:809836/106‑1 (MQ=255)
aaaCTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTc < 2:1634039/149‑1 (MQ=255)
tCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCg > 1:1804288/1‑149 (MQ=255)
aaCGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTaa > 3:1118470/1‑98 (MQ=255)
aaCGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTaa < 4:1118470/98‑1 (MQ=255)
aaCGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAacac > 4:152205/1‑101 (MQ=255)
aaCGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAacac < 3:152205/101‑1 (MQ=255)
aaCGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGa > 4:1232986/1‑149 (MQ=255)
aaCGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGa > 2:351216/1‑149 (MQ=255)
gAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCg > 1:1111653/1‑149 (MQ=255)
gaagaGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCa > 2:343873/1‑100 (MQ=255)
gaagaGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCa < 1:343873/100‑1 (MQ=255)
gaagaGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTgg > 4:646567/1‑129 (MQ=255)
gaagaGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTgg < 3:646567/129‑1 (MQ=255)
gagaATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCAt < 4:1824733/149‑1 (MQ=255)
gaATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGata < 3:1519725/80‑1 (MQ=255)
gaATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGata > 4:1519725/1‑80 (MQ=255)
gaATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCAttt > 2:1026263/1‑149 (MQ=255)
aaTATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTc > 3:1088863/1‑149 (MQ=255)
aaTATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTc > 4:247049/1‑149 (MQ=255)
atCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGc > 2:983577/1‑114 (MQ=255)
atCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGc < 1:983577/114‑1 (MQ=255)
tCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTg > 2:912682/1‑118 (MQ=255)
cTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGc < 3:247049/149‑1 (MQ=255)
aTTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGaa > 1:538494/1‑149 (MQ=255)
ttGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAg > 4:844467/1‑149 (MQ=255)
cgTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCAt < 2:1804288/149‑1 (MQ=255)
gTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTtgt > 1:1353844/1‑99 (MQ=255)
gTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTtgt < 2:1353844/99‑1 (MQ=255)
aaTATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTg > 2:1744981/1‑58 (MQ=255)
aaTATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTg < 1:1744981/58‑1 (MQ=255)
aaTATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTaa < 3:1397981/65‑1 (MQ=255)
aaTATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTaa > 4:1397981/1‑65 (MQ=255)
atTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCgggg < 3:1524483/119‑1 (MQ=255)
atTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCgggg > 4:1524483/1‑119 (MQ=255)
atTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCgg > 1:1830911/1‑117 (MQ=255)
atTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCgg < 2:1830911/117‑1 (MQ=255)
ttCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCAtt > 1:401699/1‑149 (MQ=255)
cGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCAttac < 2:538494/149‑3 (MQ=255)
cATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGa > 1:177670/1‑149 (MQ=255)
aTGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGaa < 4:1088863/149‑1 (MQ=255)
aTGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGaa < 3:1232986/149‑1 (MQ=255)
cAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCggg > 2:375452/1‑108 (MQ=255)
cAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCggg < 1:375452/108‑1 (MQ=255)
aTGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGatat < 2:1111653/149‑1 (MQ=255)
ggAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCg < 1:62050/149‑1 (MQ=255)
ttGGCGAACTATTCCTCGTATATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGttt > 3:1117287/1‑149 (MQ=255)
gCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTa > 1:423133/1‑147 (MQ=255)
gCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTa < 2:423133/147‑1 (MQ=255)
gAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGatat < 2:318154/137‑1 (MQ=255)
gAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGatat > 1:318154/1‑137 (MQ=255)
aaCTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCAAt < 3:844467/149‑1 (MQ=255)
tATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCggg < 1:1457546/90‑1 (MQ=255)
tATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCggg > 2:1457546/1‑90 (MQ=255)
tATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCAcc > 3:1450108/1‑103 (MQ=255)
ccTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCAATGAGCTgg < 1:1382604/149‑1 (MQ=255)
cTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCAATGa > 4:799898/1‑143 (MQ=255)
cTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCAATGa < 3:799898/143‑1 (MQ=255)
tCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCgg > 1:581847/1‑127 (MQ=255)
cTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTcg > 3:1790534/1‑90 (MQ=255)
cTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTATGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCa < 4:1790534/91‑1 (MQ=255)
atATCAA‑CGATCGGTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGaa > 3:258904/2‑118 (MQ=255)
tATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCAATGAGCTGGGTTATCa < 2:177670/149‑1 (MQ=255)
tATCAA‑CGATCGGTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGa > 1:188547/1‑116 (MQ=255)
tATCAA‑CGATCGGTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGa < 2:188547/116‑1 (MQ=255)
aCCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGat < 1:584746/115‑1 (MQ=255)
aCCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGat > 2:584746/1‑115 (MQ=255)
ccGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCaa < 3:971650/128‑1 (MQ=255)
c‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCAATGAGCTGGGTTATCAGATTATTaaaa < 4:1117287/149‑1 (MQ=255)
c‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCAATGAGCTGGGTTATCAGATTATTaaaa < 4:724663/149‑1 (MQ=255)
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CGATTTCCAGTATCCGTGACCATATGTTCTCAGAGTTTATTTTCTGTGATGACGCGAAACTCAACGAAATAGAAGAGAATATCTGGATTGCGCGTAATATTCGCCATGCAATGGAAATTGGCGAACTATTCCTCGTCTATCAACCGATC‑GTTGATATTAACACCCGCGCCATTCTGGGCGCGGAGGCGTTGTGCCGTTGGGTGTCTGCGGAGCGGGGGATCATTTCACCGCTGAAGTTCATTACCATTGCTGAAGATATCGGGTTTATCAATGAGCTGGGTTATCAGATTATTAAAA > NC_000913/874480‑874776
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
