Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F9 I0 R1
|
1164 |
192.0 |
7567036 |
97.0% |
7340024 |
130.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,648,348 |
C→T |
5.5% |
intergenic (+7/‑160) |
dicA → / → ydfA |
Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,648,348 | 0 | C | T | 5.5%
| 429.1
/ 9.9
| 126 | intergenic (+7/‑160) | dicA/ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base C (62/57); new base T (5/2); total (67/59) |
| Fisher's exact test for biased strand distribution p-value = 4.47e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 |
Only 100 of 137 total aligned reads displayed.
TTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAGGGG > NC_000913/1648211‑1648494
|
ttGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATc > 1:1152913/1‑149 (MQ=255)
cTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 3:477769/149‑1 (MQ=255)
tttAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCttt > 2:1592862/1‑144 (MQ=255)
tGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 3:472776/136‑1 (MQ=255)
tGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 1:1351324/136‑1 (MQ=255)
tGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 3:1478141/136‑1 (MQ=255)
tGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa > 4:1478141/1‑136 (MQ=255)
ccAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGt < 3:251094/149‑1 (MQ=255)
tCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCTGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa > 4:436292/1‑128 (MQ=255)
tCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa > 4:280436/1‑128 (MQ=255)
tCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTAAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 3:280436/128‑1 (MQ=255)
gAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTa > 1:660144/1‑142 (MQ=255)
ggATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACGTCATCAATGA‑GTTATCTTTTACCACATCAATTa < 2:1188260/132‑1 (MQ=255)
gATACCCAGCTCGCCGAAATGCGAGCTCGAGTAATAGACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGAGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGtt < 4:170874/135‑1 (MQ=255)
gATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGtt < 3:405270/135‑1 (MQ=255)
gATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGtt > 3:170874/1‑135 (MQ=255)
gATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGtt > 4:405270/1‑135 (MQ=255)
ccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATc > 1:1636265/1‑109 (MQ=255)
ccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATc > 2:1195436/1‑149 (MQ=255)
cAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAAC‑TCATTGATGATGTTATCt > 4:820118/1‑109 (MQ=38)
cAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAAC‑TCATTGATGATGTTATCt < 3:820118/109‑1 (MQ=38)
tCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTg > 4:1344391/1‑149 (MQ=255)
gCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGAc > 4:1873702/1‑149 (MQ=255)
gAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCCTCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAAt < 4:1192814/138‑1 (MQ=255)
gAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAAt > 3:1192814/1‑138 (MQ=255)
gAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa < 3:942276/143‑1 (MQ=255)
gAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa > 4:942276/1‑143 (MQ=255)
gAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATg < 2:718324/149‑1 (MQ=255)
gAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATg > 1:773781/1‑149 (MQ=255)
aaaaaCTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACGAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCtata > 3:1683311/1‑109 (MQ=255)
ttCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAACTAAAAGATAACATCATCAATGA‑GTTATCTTTTACcaca > 1:282480/1‑85 (MQ=255)
ttCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACcaca < 2:282480/85‑1 (MQ=255)
tCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt < 2:773781/149‑1 (MQ=255)
tCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt < 2:1717023/149‑1 (MQ=255)
tCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt < 3:1344391/149‑1 (MQ=255)
aaTAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt < 4:754516/147‑1 (MQ=255)
aaTAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt > 3:754516/1‑147 (MQ=255)
aTAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGata > 1:106432/1‑123 (MQ=255)
aTAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGata < 2:106432/123‑1 (MQ=255)
tAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑TTTATCTTTTACCACATCAATTATGTTACCtata < 1:537926/98‑1 (MQ=255)
tAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCtata > 2:537926/1‑98 (MQ=255)
tAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCa > 4:1454339/1‑149 (MQ=255)
aCTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa > 4:1012841/1‑124 (MQ=255)
aCTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa < 3:1012841/124‑1 (MQ=255)
tctTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGctgagaa > 2:685947/1‑143 (MQ=255)
tctTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGctgagaa < 1:685947/149‑7 (MQ=255)
tctTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAac > 1:1405534/1‑149 (MQ=255)
tttGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCAGACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAacac > 3:1632547/1‑149 (MQ=255)
tgatgaATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAacacac < 4:1632547/149‑1 (MQ=255)
gaagaaTTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa > 3:960738/1‑117 (MQ=255)
gaagaaTTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa < 4:960738/117‑1 (MQ=255)
agaaTTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCAc < 1:1851653/100‑1 (MQ=255)
agaaTTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGc > 3:1137829/1‑149 (MQ=255)
tACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGgt < 2:1405534/149‑1 (MQ=255)
tACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGgt < 2:400421/149‑1 (MQ=255)
tAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCaa > 1:487166/1‑133 (MQ=255)
tAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt > 2:1819790/1‑149 (MQ=255)
tAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt > 4:1684286/1‑149 (MQ=255)
tAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt > 1:540327/1‑149 (MQ=255)
aaaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAAt > 2:1371849/1‑118 (MQ=255)
aaaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAAt < 1:1371849/118‑1 (MQ=255)
aaaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTtc < 1:1195436/149‑1 (MQ=255)
aaaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTtc < 2:540327/149‑1 (MQ=255)
aaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCAc > 3:1267373/1‑90 (MQ=255)
aaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCAc < 4:1267373/90‑1 (MQ=255)
aaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTtct < 1:1819790/149‑1 (MQ=255)
aGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCa < 4:1137829/149‑1 (MQ=255)
tCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCa < 3:704247/146‑1 (MQ=255)
tCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCa > 4:704247/1‑146 (MQ=255)
gtaCAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTc > 1:885844/3‑149 (MQ=255)
gACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCaa > 4:1625867/1‑117 (MQ=255)
gACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCa > 2:1302346/1‑137 (MQ=255)
gACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTcc > 4:592151/1‑149 (MQ=255)
gACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTcc > 2:1031569/1‑149 (MQ=255)
aaaTAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCt < 1:1031569/149‑1 (MQ=255)
aaaTAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCt < 3:592151/149‑1 (MQ=255)
gtAAAAGATAAC‑TCATTGATGATGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTAc > 3:394956/2‑149 (MQ=255)
tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa < 4:1264464/85‑1 (MQ=255)
tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa > 3:1264464/1‑85 (MQ=255)
tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATg < 3:360362/91‑1 (MQ=255)
tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATg > 4:360362/1‑91 (MQ=255)
tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAAt > 2:550378/1‑97 (MQ=255)
tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGc < 2:1239508/106‑1 (MQ=255)
tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGc > 1:1239508/1‑106 (MQ=255)
tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTAcc > 2:1183454/1‑149 (MQ=255)
tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTAcc > 3:1767451/1‑149 (MQ=255)
aaaaGATAAC‑TCATTGATGATGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTAccc > 4:498640/1‑149 (MQ=255)
aGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCtt < 1:1210617/96‑1 (MQ=255)
aGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATACCAGACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAg > 2:1001315/1‑149 (MQ=255)
aGATAAC‑TCATTGATGATGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATa > 1:769826/1‑57 (MQ=17)
aGATAAC‑TCATTGATGATGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAg > 3:1475653/1‑149 (MQ=255)
gATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGc < 3:1521405/149‑1 (MQ=255)
atcatcAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt > 3:1826118/1‑116 (MQ=255)
atcatcAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt < 4:1826118/116‑1 (MQ=255)
atcatcAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAg < 2:885844/149‑1 (MQ=255)
atcatcAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAg > 4:1502561/1‑149 (MQ=255)
tcatcaATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCa < 1:1646044/119‑1 (MQ=255)
tcatcaATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCa > 2:1646044/1‑119 (MQ=255)
atcaATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAgggg > 4:525586/1‑149 (MQ=255)
atcaATGA‑GTTATCTTTTACCAAATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAgggg > 2:713855/1‑149 (MQ=255)
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TTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAGGGG > NC_000913/1648211‑1648494
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
