Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F9 I0 R1
|
1164 |
192.0 |
7567036 |
97.0% |
7340024 |
130.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,890,943 |
T→C |
100% |
T109A (ACC→GCC) |
tsaB ← |
tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,890,943 | 0 | T | C | 99.6%
| 412.4
/ ‑6.5
| 112 | T109A (ACC→GCC) | tsaB | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (57/54); minor base A (0/1); total (57/55) |
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 112 total aligned reads displayed.
GGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGTTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAGCTACCGGGGCCGCGCCCGTAA > NC_000913/1890797‑1891088
|
ggAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTg > 4:1392823/1‑149 (MQ=255)
gAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgc < 2:1006791/149‑1 (MQ=255)
aaaGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgcg > 3:462697/1‑149 (MQ=255)
aaaGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgc < 2:526471/148‑1 (MQ=255)
aaaGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgc > 1:526471/1‑148 (MQ=255)
aaaGCTGTTGCATTCGATCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgcg < 2:934488/149‑1 (MQ=255)
cTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGt < 2:525071/149‑1 (MQ=255)
aTTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTgcg > 1:1863684/1‑149 (MQ=255)
ttCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgc < 4:191626/136‑1 (MQ=255)
ttCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgc > 3:191626/1‑136 (MQ=255)
cGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCa < 3:643036/149‑1 (MQ=255)
gTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCAc > 2:1760294/1‑149 (MQ=255)
gTTCATGGACGATTTCGGGCTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCAc > 2:727522/1‑149 (MQ=255)
ttCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACg > 3:348965/1‑149 (MQ=255)
tGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTgc > 3:1836721/1‑139 (MQ=255)
tGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTgc < 4:1836721/139‑1 (MQ=255)
aCGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgc > 3:191929/1‑125 (MQ=255)
aCGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCAc < 4:798499/141‑1 (MQ=255)
aCGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTg > 1:1534192/1‑149 (MQ=255)
aCGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGGAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgc < 4:191929/125‑1 (MQ=255)
tttCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCGGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCAc < 2:1812144/137‑1 (MQ=255)
tttCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgcg > 3:448171/1‑122 (MQ=255)
tttCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgcg < 4:448171/122‑1 (MQ=255)
tttCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCAc > 1:1812144/1‑137 (MQ=255)
tttCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTgcg < 4:1531782/147‑1 (MQ=255)
tttCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTgcg > 3:1531782/1‑147 (MQ=255)
tttGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCa > 4:567399/1‑149 (MQ=255)
tGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCAtt > 3:121201/1‑149 (MQ=255)
gAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTa < 1:727522/149‑1 (MQ=255)
gAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTa < 4:462697/149‑1 (MQ=255)
gTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGc < 2:1534192/149‑1 (MQ=255)
tACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCg > 3:1596420/1‑149 (MQ=255)
aCGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGt < 4:121201/149‑1 (MQ=255)
ggCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTgg < 1:1130144/149‑1 (MQ=255)
gCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGcccc < 3:1178378/125‑1 (MQ=255)
gCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGcccc > 4:1178378/1‑125 (MQ=255)
ttCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGgaga > 2:1250468/1‑149 (MQ=255)
cGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgcgc > 3:1383704/1‑102 (MQ=255)
cGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTgcgc < 4:1383704/102‑1 (MQ=255)
gTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGcc > 2:14996/1‑149 (MQ=255)
tcttcACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATTGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAat < 2:1222004/149‑1 (MQ=255)
cttcACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAatc > 1:1102784/1‑149 (MQ=255)
cttcACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAatc < 2:1102784/149‑1 (MQ=255)
aCCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCg < 1:14996/149‑1 (MQ=255)
tGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTaa < 3:1662790/149‑1 (MQ=255)
ccAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAAtt < 1:1250468/149‑1 (MQ=255)
aCCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGGGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCCTGGAGACGCCAATCATCGGTACTTCCgcgc > 2:1373579/1‑149 (MQ=255)
aCCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCgcgc > 1:1780021/1‑149 (MQ=255)
cGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCa > 2:114459/1‑149 (MQ=255)
tttCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAgc < 1:1373579/149‑1 (MQ=255)
tGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCg > 4:1175287/1‑121 (MQ=255)
tGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCg < 1:1872045/121‑1 (MQ=255)
tGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCg < 3:1175287/121‑1 (MQ=255)
tGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTg > 2:840561/1‑149 (MQ=255)
tCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGAt < 1:1760294/149‑1 (MQ=255)
ggCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGc > 1:758355/1‑104 (MQ=255)
ggCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGc < 2:758355/104‑1 (MQ=255)
cccAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCa > 2:1112061/1‑149 (MQ=255)
cAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCaa > 4:352119/1‑148 (MQ=255)
cAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCaa < 3:352119/148‑1 (MQ=255)
cAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAAt > 4:538817/1‑149 (MQ=255)
cAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAAt > 2:167634/1‑149 (MQ=255)
aGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATa > 4:1715801/1‑149 (MQ=255)
gTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATAc > 2:1224933/1‑149 (MQ=255)
tAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTa > 3:835206/1‑85 (MQ=255)
aCTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAAt < 1:758837/149‑1 (MQ=255)
aCTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAAt < 2:1863684/149‑1 (MQ=255)
aCTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAAt > 4:1082871/1‑149 (MQ=255)
ttCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATgc > 3:1371310/1‑149 (MQ=255)
cccATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAAt > 4:614315/1‑143 (MQ=255)
cccATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAAt < 3:614315/143‑1 (MQ=255)
ccATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGgaga < 2:1384155/84‑1 (MQ=255)
ccATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGgaga > 1:1384155/1‑84 (MQ=255)
ccATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGAt < 3:1391281/130‑1 (MQ=255)
ccATTCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGAt > 4:1391281/1‑130 (MQ=255)
ttCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCa > 4:1856078/1‑114 (MQ=255)
ttCGCGCGTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCa < 3:1856078/114‑1 (MQ=255)
gcgcgTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTa > 1:1801569/1‑149 (MQ=255)
gcgTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTaaa < 2:1780021/149‑1 (MQ=255)
cgTCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAg < 3:538817/149‑1 (MQ=255)
tCAATGTCTGCCCGCACCCTATCTGCGCCGAATTTGCCCCCCGCACTTTGTGCCAGCACCTCTAGCGTGGAGATGTCTCTCAACAGCAACTCCGCGCCAAGCGCCAGCCCTTGCGCGGTGCTAATACCTATGCGCTCGCCAAGAAAGCt > 4:732620/1‑149 (MQ=255)
tCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAgcg > 1:862912/1‑103 (MQ=255)
tCAATGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAgcg < 2:862912/103‑1 (MQ=255)
aaTGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGTCCTTGCGCGATGCCAATACCAAt < 2:265378/129‑1 (MQ=255)
aaTGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAAt > 1:265378/1‑129 (MQ=255)
aaTGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAGCTAc < 1:1224933/149‑1 (MQ=255)
aTGGCTGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTaaa > 2:205560/1‑143 (MQ=255)
tGCCAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAGCTACCGGGGc > 1:824978/1‑149 (MQ=255)
atccAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTaaa < 4:201947/136‑1 (MQ=255)
ccAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTaa > 2:1749051/1‑79 (MQ=255)
ccAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTaa < 1:1749051/79‑1 (MQ=255)
cAGCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAGCTACCGGGGCcgc > 4:270214/1‑149 (MQ=255)
gCACGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAGCTACCGGGGCCgcgc > 2:1873950/1‑149 (MQ=255)
aCGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGa < 3:1861670/103‑1 (MQ=255)
aCGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGa > 4:1861670/1‑103 (MQ=255)
aCGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAGCTACCGGGGCCGCGccc > 1:1280759/1‑149 (MQ=255)
aCGCGGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAGCTACCGGGGCCGCGccc < 1:1873950/149‑1 (MQ=255)
cgcgGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCgg > 2:317149/1‑70 (MQ=255)
cgcgGGCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCgg < 1:317149/70‑1 (MQ=255)
gggCTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAGCTACCGGGGCCGCGCCCGTaa < 3:567399/149‑1 (MQ=255)
|
GGAAAGCTGTTGCATTCGTTCATGGACGATTTCGGGTTTGAGTACGGCTTCGGTTTCTTCACCGTGCCAGATACCGTTTTCATCACGCTGATATTCGGCCCAGTAAACTTCGCCCATTCGCGCGTCAATGGCTGCCAGCACGCGGGTTGCGCCGTTTTTGCGCCACGCCCCTTGCGCCATCGTCATTAGCGTGGAGACGCCAATCATCGGTAATTCCGCGCCAAGCGCCAGCCCTTGCGCGATGCCAATACCAATGCGCACGCCAGTAAAGCTACCGGGGCCGCGCCCGTAA > NC_000913/1890797‑1891088
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
