Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A114 F1 I1 R1
|
20 |
239.5 |
15463816 |
93.1% |
14396812 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,882,902 |
Δ2 bp |
intergenic (‑96/+520) |
atpI ← / ← gidB |
F0F1 ATP synthase subunit I/glucose‑inhibited division protein; b3740_1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,882,900 | 0 | T | . | 99.3%
| 1403.6
/ 1.9
| 276 | intergenic (‑94/+523) | atpI/gidB | F0F1 ATP synthase subunit I/glucose‑inhibited division protein; b3740_1 |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base . (133/141); total (134/142) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.89e-01 |
| * | REL606 | 3,882,901 | 0 | A | . | 99.3%
| 1401.8
/ 1.8
| 276 | intergenic (‑95/+522) | atpI/gidB | F0F1 ATP synthase subunit I/glucose‑inhibited division protein; b3740_1 |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base . (133/141); total (134/142) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01 |
Only 100 of 306 total aligned reads displayed.
TCCCTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATTATACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGTTTAAATATTTTTCC > REL606/3882825‑3882969
||
tCCCTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAtt < 1:3320804/76‑1 (MQ=255)
tCCCTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAtt < 1:3027548/76‑1 (MQ=255)
cccTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATta < 2:2019609/76‑1 (MQ=255)
cccTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATta < 2:2322428/76‑1 (MQ=255)
cccTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATta < 1:1913355/76‑1 (MQ=255)
cccTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATta > 1:6972597/1‑76 (MQ=255)
cccTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATta > 1:6420057/1‑76 (MQ=255)
cccTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATta < 1:5275383/76‑1 (MQ=255)
ccTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATtac > 1:2217032/1‑75 (MQ=255)
ccTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATtac < 1:6081868/76‑2 (MQ=255)
ggTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTgcgc > 2:5553291/1‑76 (MQ=255)
tATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGccc > 2:446654/1‑76 (MQ=255)
tATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGccc > 2:3355599/1‑76 (MQ=255)
aTGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGcccc > 1:4498478/1‑76 (MQ=255)
tGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGccccc < 2:3789219/76‑1 (MQ=255)
gCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCg < 1:4184735/76‑1 (MQ=255)
ccGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAATCGGTCAAAT‑‑TACGGTGCGCCCCCGt > 1:6155757/1‑76 (MQ=255)
ccGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGt < 2:1192347/76‑1 (MQ=255)
cgcgTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTg < 1:7515938/76‑1 (MQ=255)
cgTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGAt > 2:3529968/1‑76 (MQ=255)
tgtCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGAttt > 1:5327866/1‑76 (MQ=255)
gtCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTc < 1:5675894/76‑1 (MQ=255)
gtCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTc > 1:6884100/1‑76 (MQ=255)
gtCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTc > 2:48636/1‑76 (MQ=255)
gtCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTc > 2:1995941/1‑76 (MQ=255)
gtCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTc < 1:4675435/76‑1 (MQ=255)
gtCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTc < 1:3550780/76‑1 (MQ=255)
cGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCaa > 1:12139/1‑76 (MQ=255)
cGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCaa < 2:578925/76‑1 (MQ=255)
gTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCaaa < 2:544416/76‑1 (MQ=255)
tataAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAAc < 1:1995919/76‑1 (MQ=255)
tataAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAAc > 2:4321089/1‑76 (MQ=255)
tataAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAAc > 1:3364453/1‑76 (MQ=255)
tataAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAAc > 2:2993820/1‑76 (MQ=255)
ataAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACa > 1:371979/1‑76 (MQ=255)
ataAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACa > 1:5798458/1‑76 (MQ=255)
ataAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACa > 1:1833897/1‑76 (MQ=255)
ataAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACa > 1:4850352/1‑76 (MQ=255)
taATACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACaa > 1:2059541/1‑76 (MQ=255)
taAAACTTTCTTTAAGGCTTAGATTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACaa < 2:7514054/76‑1 (MQ=255)
taAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACaa > 2:5194104/1‑76 (MQ=255)
aaaaCTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAAt > 1:2878076/1‑76 (MQ=255)
aaaaCTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAAt < 2:4362418/76‑1 (MQ=255)
aaaaCTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAAt < 1:7051213/76‑1 (MQ=255)
aaaaCTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAAt > 2:1916294/1‑76 (MQ=255)
aaaCTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATa < 1:4633602/76‑1 (MQ=255)
aaCTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATaa < 2:5021323/76‑1 (MQ=255)
ctttctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGt < 1:1009704/76‑1 (MQ=255)
ctttctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGt > 1:424933/1‑76 (MQ=255)
tttctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTa < 1:664487/76‑1 (MQ=255)
tttctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTa > 1:3970396/1‑76 (MQ=255)
tttctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTa > 1:7298719/1‑76 (MQ=255)
tttctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTa > 1:2291491/1‑76 (MQ=255)
ttctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAg < 2:1267478/76‑1 (MQ=255)
ttctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAg > 2:6549063/1‑76 (MQ=255)
tctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGc > 1:2438144/1‑76 (MQ=255)
ctttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGcc < 1:5506040/76‑1 (MQ=255)
tttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCa < 1:1456264/76‑1 (MQ=255)
tttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCa < 1:5146711/76‑1 (MQ=255)
ttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCaa < 2:5913731/76‑1 (MQ=255)
ttAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCaa > 1:761363/1‑76 (MQ=255)
tAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCaaa < 2:6852009/76‑1 (MQ=255)
tAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCaaa > 2:6274606/1‑76 (MQ=255)
aaGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCaaaa > 2:7479596/1‑76 (MQ=255)
aaGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCaaaa < 2:7697213/76‑1 (MQ=255)
aaGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCaaaa < 1:2120348/76‑1 (MQ=255)
aaGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCaaaa > 1:3160297/1‑76 (MQ=255)
aaGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCaaaa < 1:4439821/76‑1 (MQ=255)
aGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATTAT‑‑GGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAg > 1:226771/1‑76 (MQ=255)
aGGCTTAGAATCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAg < 2:6602864/76‑1 (MQ=255)
ggCTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAgg < 2:5105965/76‑1 (MQ=255)
cTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTg > 1:1113967/1‑76 (MQ=255)
cTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTg < 1:1357819/76‑1 (MQ=255)
cTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTg > 2:2430018/1‑76 (MQ=255)
cTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTg > 2:1459281/1‑76 (MQ=255)
cTTAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTg < 1:4762376/76‑1 (MQ=255)
ttAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGa > 1:500367/1‑76 (MQ=255)
ttAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGa < 2:1731667/76‑1 (MQ=255)
tAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGaa > 2:2642266/1‑76 (MQ=255)
tAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGaa > 2:2823235/1‑76 (MQ=255)
tAGAGTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGaa > 1:3452032/1‑76 (MQ=255)
gagTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATa < 1:5083707/76‑1 (MQ=255)
gagTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATa < 2:4109968/76‑1 (MQ=255)
gagTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATa < 2:1027071/76‑1 (MQ=255)
agTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATaa < 1:5742066/76‑1 (MQ=255)
agTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATaa < 1:1660164/76‑1 (MQ=255)
agTCAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATaa < 1:2531897/76‑1 (MQ=255)
cAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATg < 1:238626/76‑1 (MQ=255)
cAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATg > 1:1570589/1‑76 (MQ=255)
cAAGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATg > 1:741568/1‑76 (MQ=255)
aaGCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGt > 2:7316833/1‑76 (MQ=255)
gCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGttt < 2:6056647/76‑1 (MQ=255)
gCATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGttt > 2:2155749/1‑76 (MQ=255)
cATCAAAAAGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGTTTa < 2:7027541/76‑1 (MQ=255)
aaaaaGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGTTTAAata > 2:4609842/1‑76 (MQ=255)
aaaaGCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGTTTAAatat < 1:6547577/76‑1 (MQ=255)
gCGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGTTTAAATAttttt < 2:4026387/76‑1 (MQ=255)
cGGTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGTTTAAATATTTTTc < 2:3147953/76‑1 (MQ=255)
ggTCAAAT‑‑TACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGTTTAAATATTTTTcc < 1:5990975/76‑1 (MQ=255)
tCAAATTATACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGTTTAAATATTTTTcc < 2:1628622/76‑1 (MQ=255)
||
TCCCTTCGAGGTATGCCGCGTGTCGTATAAAACTTTCTTTAAGGCTTAGAGTCAAGCATCAAAAAGCGGTCAAATTATACGGTGCGCCCCCGTGATTTCAAACAATAAGTAGCCAAAAGGTGAATAAATGTTTAAATATTTTTCC > REL606/3882825‑3882969
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
