Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
14 |
24.7 |
1576304 |
96.5% |
1521133 |
75.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
4,202,000 |
Δ674 bp |
|
[iclR] |
[iclR] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
4202000 |
4202673 |
674 |
22 [0] |
[0] 26 |
[iclR] |
[iclR] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 4201999 | 0 (0.000) | 19 (0.880) |
19/132 |
0.2 |
100% |
coding (561/825 nt) |
iclR |
DNA‑binding transcriptional repressor |
| ? | REL606 |
4202674 = |
0 (0.000) | intergenic (‑115/‑85) |
iclR/metH |
DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
GATK/CNVnator alignment
N/A
