Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A23 F1 I1 R1
|
14 |
40.5 |
2605368 |
96.4% |
2511574 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,928,259 |
A→T |
I15F (ATC→TTC) |
rho → |
transcription termination factor Rho |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,928,259 | 0 | A | T | 100.0%
| 132.0
/ NA
| 35 | I15F (ATC→TTC) | rho | transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (17/18); total (17/18) |
ATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTT > REL606/3928186‑3928324
|
aTTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTTAGCTGTTc < 2:639941/76‑1 (MQ=255)
aTTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTc < 2:541553/76‑1 (MQ=255)
tACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCAct > 2:1021077/1‑76 (MQ=255)
tACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCAct > 2:1003258/1‑76 (MQ=255)
cccAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACtctc < 2:797675/76‑1 (MQ=255)
aaGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAat < 1:529593/76‑1 (MQ=255)
aaCTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGATAATATg > 1:1182041/1‑76 (MQ=255)
aaCTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATg > 2:332011/1‑76 (MQ=255)
cTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATggg > 2:1790/1‑76 (MQ=255)
cTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATggg > 1:719931/1‑76 (MQ=255)
cTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATggg > 1:719945/1‑76 (MQ=255)
cacaCCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGc > 2:379644/1‑76 (MQ=255)
caccacTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTg < 2:834383/76‑1 (MQ=255)
accacTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTgg > 1:1040924/1‑76 (MQ=255)
accacTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTgg > 1:892215/1‑76 (MQ=255)
accacTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTgg > 1:121524/1‑76 (MQ=255)
accacTATGAATCTTACAGAATGAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGCAAATATGGGGCTgg > 2:188330/1‑76 (MQ=255)
ccacTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGa < 1:500196/76‑1 (MQ=255)
cTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGaaaa > 2:292907/1‑76 (MQ=255)
aaTCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTgg > 2:316655/1‑76 (MQ=255)
ttACCGAATTAANGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCg > 1:16865/1‑76 (MQ=255)
aCCGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTa > 1:770398/1‑76 (MQ=255)
ccGAATTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTAt < 1:599111/76‑1 (MQ=255)
aTTAAAGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGt < 2:740088/76‑1 (MQ=255)
aaaGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAg < 2:365922/76‑1 (MQ=255)
aaGAATACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGc < 2:935710/76‑1 (MQ=255)
aaTACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAgg < 1:803139/76‑1 (MQ=255)
tACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGAc < 1:1044901/76‑1 (MQ=255)
tACGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGAc < 1:405451/76‑1 (MQ=255)
aCGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACa < 1:946353/76‑1 (MQ=255)
aCGCCGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACa < 1:946342/76‑1 (MQ=255)
ccGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACatta > 1:55909/1‑76 (MQ=255)
cGGTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACattat < 1:379644/76‑1 (MQ=255)
ggTTTCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACattatt < 1:396925/76‑1 (MQ=255)
tttCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTAtttt < 2:86852/76‑1 (MQ=255)
ttCTGAGCTGTTCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTAttttt > 1:620334/1‑76 (MQ=255)
|
ATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTT > REL606/3928186‑3928324
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
