Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F142 I1 R1
|
99 |
64.8 |
3148104 |
96.3% |
3031624 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,782,883 |
G→A |
intergenic (‑157/+182) |
ypjA ← / ← pinH |
adhesin‑like autotransporter/pseudogene, invertase resolvase family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,782,883 | 0 | G | A | 98.7%
| 263.9
/ ‑4.2
| 76 | intergenic (‑157/+182) | ypjA/pinH | adhesin‑like autotransporter/pseudogene, invertase resolvase family |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (43/32); total (43/33) |
| Fisher's exact test for biased strand distribution p-value = 4.34e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 |
CAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGT > NC_000913/2782786‑2782977
|
cAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAaataat < 1:985223/100‑1 (MQ=255)
aaCATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAataatg > 2:489932/1‑100 (MQ=255)
aaCATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAataatg < 1:300075/100‑1 (MQ=255)
aTCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGata > 1:885696/1‑100 (MQ=255)
gCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTcc < 1:582974/100‑1 (MQ=255)
ccACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGc > 2:1078739/1‑100 (MQ=255)
ccACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGc < 2:1121258/100‑1 (MQ=255)
ccACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGc > 2:1369439/1‑100 (MQ=255)
cacaGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCa < 1:1298042/100‑1 (MQ=255)
acaGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCAt > 2:1240777/1‑100 (MQ=255)
aGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATaa > 1:1557000/1‑100 (MQ=255)
ggCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAg > 2:1390629/1‑100 (MQ=255)
gCACCAGTCCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGa < 2:122234/100‑1 (MQ=255)
ccagaccagGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATg < 2:1256437/100‑1 (MQ=255)
agaccagGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAg < 1:990539/100‑1 (MQ=255)
accagGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGc < 2:100344/100‑1 (MQ=255)
ggATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCAttttt < 2:774238/100‑1 (MQ=255)
gATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCCTGATGAAATAATGATATTCCGCATAAGAATGAGGCAtttttt > 2:1106154/1‑100 (MQ=255)
aTTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTa < 1:947664/100‑1 (MQ=255)
tccATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTaa > 2:406072/3‑100 (MQ=255)
tCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTaan < 1:531918/100‑2 (MQ=255)
tCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGc > 1:437952/1‑100 (MQ=255)
ccTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCa < 1:355098/100‑1 (MQ=255)
cTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAg > 1:1510783/1‑100 (MQ=255)
cTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAg < 2:156620/100‑1 (MQ=255)
tGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGt > 1:1413366/1‑100 (MQ=255)
gAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTg > 1:1162674/1‑100 (MQ=255)
gagaCAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTgcgc < 2:152293/100‑1 (MQ=255)
agaCAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCt < 1:1403372/100‑1 (MQ=255)
gaCAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTg > 2:286398/1‑100 (MQ=255)
gaCAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTg > 1:478847/1‑100 (MQ=255)
cgcAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGCATGAGGCATTTTTTAAACGCAGTGCGCTGAAgtg > 2:780762/1‑100 (MQ=255)
cgcAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAgtg > 2:1123859/1‑100 (MQ=255)
cgcAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAgtg > 1:276638/1‑100 (MQ=255)
gcAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAgtgt > 2:595106/1‑100 (MQ=255)
aaGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTgg < 2:1426488/100‑1 (MQ=255)
gtgtATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGtt < 2:610751/100‑1 (MQ=255)
gtATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTgg < 1:88181/100‑1 (MQ=255)
gtATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTgg > 1:1532361/1‑100 (MQ=255)
gtATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTgg < 1:1240785/100‑1 (MQ=255)
tgtgTTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATaa > 1:1252123/1‑100 (MQ=255)
gtgtTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATaaa > 2:922077/1‑100 (MQ=255)
gtgtTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATaaa > 2:151497/1‑100 (MQ=255)
gtTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATaaaaa > 2:107488/1‑100 (MQ=255)
gtTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATaaaaa > 1:325445/1‑100 (MQ=255)
gtTCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATaaaaa < 1:1362550/100‑1 (MQ=255)
ttCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGGTaaaaaa > 2:1189504/1‑100 (MQ=255)
ttCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATaaaaaa > 1:791117/1‑100 (MQ=255)
tCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAg > 1:472276/1‑100 (MQ=255)
tCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAg > 1:100099/1‑100 (MQ=255)
tCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAg < 1:595109/100‑1 (MQ=255)
tCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAg < 1:971291/100‑1 (MQ=255)
tCACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTAGTTGGATAAAAAAg < 2:181788/100‑1 (MQ=255)
cACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGt > 2:694617/1‑100 (MQ=255)
cACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGt < 1:774721/100‑1 (MQ=255)
cACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGt > 1:762004/1‑100 (MQ=255)
cACCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGAGTGGTTGGATAAAAAAg > 2:827404/1‑99 (MQ=255)
aCCGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTc < 2:885689/100‑1 (MQ=255)
ccGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCa < 1:193480/100‑1 (MQ=255)
ccGCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCa < 1:1189511/100‑1 (MQ=255)
gCTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAAt > 2:873717/1‑100 (MQ=255)
cTCATCAAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATc > 2:1528843/1‑100 (MQ=255)
caAAGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTc < 2:1510773/100‑1 (MQ=255)
aaaGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTATTTTTTTTTTTCTGAAGTGTGGTTGGATAAAAAAGTTATTCCCTTc > 2:1386692/1‑99 (MQ=9)
aaaGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCa > 1:1165743/1‑100 (MQ=255)
aaaGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCa > 1:463032/1‑100 (MQ=255)
aaaGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCa > 1:585242/1‑100 (MQ=255)
aaGACATCATGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAg > 2:1164744/1‑100 (MQ=255)
atcttcatGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGa < 2:262172/96‑1 (MQ=255)
catcatGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGaaa < 1:855791/100‑1 (MQ=255)
tcatGATGAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGaagat > 1:262173/1‑97 (MQ=255)
atgatgAAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACg < 1:725410/100‑1 (MQ=255)
tgatgaAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACgg > 2:151446/1‑100 (MQ=255)
gatgaAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACggg > 2:1436806/1‑100 (MQ=255)
gatgaAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACggg < 1:342726/100‑1 (MQ=255)
atgaAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACggg > 2:1528676/1‑99 (MQ=255)
atgaAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGc > 2:476913/1‑100 (MQ=255)
tgaAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCg < 1:1350106/100‑1 (MQ=255)
gaAATAATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGt < 1:1369448/100‑1 (MQ=255)
|
CAACATCAGCCCACAGGCACCAGACCAGGGGATTCATCCTGAAGAGACAGCGCAAGTGTATTGTGTTCACCGCTCATCAAAGACATCATGATGAAATGATGATATTCCGCATAAGAATGAGGCATTTTTTAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGT > NC_000913/2782786‑2782977
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
