Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F142 I1 R1
|
99 |
64.8 |
3148104 |
96.3% |
3031624 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,910,707 |
A→T |
D273E (GAT→GAA) |
pstS ← |
phosphate ABC transporter periplasmic binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,910,707 | 0 | A | T | 100.0%
| 219.9
/ NA
| 62 | D273E (GAT→GAA) | pstS | phosphate ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (38/24); total (38/24) |
ACGCCCAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGATCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCATCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTTTCTTCGGTCGGACTAA > NC_000913/3910610‑3910801
|
aCGCCCAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTc < 1:1360908/100‑1 (MQ=255)
ngCCCAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCt > 2:479499/2‑100 (MQ=255)
cGCCCAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCt > 2:554742/1‑100 (MQ=255)
cGCCCAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCt > 2:1171418/1‑100 (MQ=255)
cGCCCAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGCAGAGGTAATAGGCCATGCTTc > 2:111745/1‑99 (MQ=255)
cccAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCttcttc > 2:980857/1‑100 (MQ=255)
cccAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCttcttc < 1:915549/100‑1 (MQ=255)
ccAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCg < 1:1533847/100‑1 (MQ=255)
gaagaaTTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTc > 2:393813/1‑100 (MQ=255)
aTTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCtggtt > 1:1317469/1‑100 (MQ=255)
aTTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCtggtt > 2:1511566/1‑100 (MQ=255)
tttCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCtggttg < 1:980865/100‑1 (MQ=255)
ttCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCtggttgg < 1:723249/100‑1 (MQ=255)
tCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCtggttggt < 1:115491/100‑1 (MQ=255)
cAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTc > 2:1539524/1‑100 (MQ=255)
aGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCa > 1:293127/1‑100 (MQ=255)
aGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCa < 1:709058/100‑1 (MQ=255)
ttCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATcc < 1:616613/100‑1 (MQ=255)
tCTGTGCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCt > 1:1175917/1‑100 (MQ=255)
gtgCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATACGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAg > 2:795574/1‑100 (MQ=255)
tgCCTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGc < 2:1317460/100‑1 (MQ=255)
cTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGaa > 2:55075/1‑100 (MQ=255)
cTTGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTACGCCTTTCAGGTTGGTCAGATCCTGAGCGaa > 2:1061775/1‑100 (MQ=255)
ttGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAg < 1:1192404/100‑1 (MQ=255)
ttGTTCTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAg < 2:715109/100‑1 (MQ=255)
cTGGTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGtttt > 2:69145/1‑100 (MQ=255)
ggTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTTGTCAGATCCTGAGCGAAGGTTTTGc > 2:869121/1‑100 (MQ=255)
ggTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATACTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGc > 2:839574/1‑100 (MQ=255)
gTTTCTTCTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCt > 2:158329/1‑100 (MQ=255)
ttcttcTGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTcn < 1:607715/100‑2 (MQ=255)
cttctGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAg > 1:1201375/1‑100 (MQ=255)
ttctGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGt > 1:141420/1‑100 (MQ=255)
tctGTTCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTc > 1:1508310/1‑100 (MQ=255)
tgttCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTg > 2:205628/4‑100 (MQ=255)
gttCTTTGTGGATCAGAATGAACGTGGTAGAGGTGATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCGAGTCTGc < 2:825985/98‑1 (MQ=255)
gttCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGc < 2:1257642/98‑1 (MQ=255)
tgtgGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCttt > 2:1386634/1‑100 (MQ=255)
tgGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTtg > 1:1170024/1‑100 (MQ=255)
naTCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTAAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTtgct > 2:1495500/2‑100 (MQ=255)
gATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTtgct > 2:375890/1‑100 (MQ=255)
gATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTtgct > 1:1345109/1‑100 (MQ=255)
aTCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTtgctg < 2:880918/100‑1 (MQ=255)
aTCAGAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTtgctg < 2:1307197/100‑1 (MQ=255)
gAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCAtt > 1:1430465/1‑100 (MQ=255)
gAATGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCAtt < 1:280354/100‑1 (MQ=255)
atctaaCGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTa < 1:1205720/96‑1 (MQ=255)
aaTGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTa < 1:1290063/100‑1 (MQ=255)
tGAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGc > 2:1039986/1‑100 (MQ=255)
gAACGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCg < 2:1047414/100‑1 (MQ=255)
aaCGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTaagat > 2:1205713/1‑96 (MQ=255)
aCGTGGTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGAGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCAtt > 2:1453605/1‑94 (MQ=255)
ggTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGttt > 2:336648/1‑100 (MQ=255)
gTAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGtttt > 2:1081668/1‑100 (MQ=255)
tAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTttc > 2:1476616/1‑100 (MQ=255)
tAGAGGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTttc > 2:1526909/1‑100 (MQ=255)
gagGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTttctt < 2:1170017/100‑1 (MQ=255)
gagGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTttctt > 2:357239/1‑100 (MQ=255)
agGTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTttcttc < 1:55075/100‑1 (MQ=255)
ggTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTTTCTtcg > 2:1292587/1‑100 (MQ=255)
ggTAATAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTTTCTtcg > 2:1420528/1‑100 (MQ=255)
aaTAGGCCATGCTTCATCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTTTCTtcggtc < 1:1547839/100‑1 (MQ=255)
tAGGCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTTTCTtcggtcgg < 1:799723/100‑1 (MQ=255)
ggCCATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTTTCTTCGGTCGGAc < 1:718467/100‑1 (MQ=255)
cATGCTTCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTTTCTTCGGTCGGACTaa > 2:1485274/1‑100 (MQ=255)
|
ACGCCCAGTCGAAGAATTTCAGCACTTCTGTGCCTTGTTCTGGTTTCTTCTGATCTTTGTGGATCAGAATGAACGTGGTAGAGGTAATAGGCCATGCATCTTCGCCTTTCTGGTTGGTCAGATCCTGAGCGAAGGTTTTGCTCCAGTCTGCACCTTTTGCTGCATTAGCGAAGTTTTCTTCGGTCGGACTAA > NC_000913/3910610‑3910801
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
