Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F204 I1 R1	117	93.2	4682243	93.4%	4373214	99.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,523,304	G→T	P264H (CCT→CAT)	yjhG ←	putative dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,523,304	0	G	T	93.6%	316.6 / 10.7	94	P264H (CCT→CAT)	yjhG	putative dehydratase
Reads supporting (aligned to +/- strand): ref base G (2/4); new base T (43/45); total (45/49)
Fisher's exact test for biased strand distribution p-value = 6.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01

ATCGCTTTATCGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACAGGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCAAAAATTGACAG  >  NC_000913/4523208‑4523399

aTCGCTTTATCGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCt                                                                                              >  1:13100/1‑100 (MQ=255)

aTCGCTTTATCGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCt                                                                                              >  1:162626/1‑100 (MQ=255)

 tCGCTTTATCGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTc                                                                                             <  1:1292915/100‑1 (MQ=255)

   gCTTTATCGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCAc                                                                                           >  1:1658500/1‑100 (MQ=255)

   gCTTTATCGGTGAGAATTTCCCGGGTGGGGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCAc                                                                                           >  1:1385633/1‑100 (MQ=255)

    cTTTATCGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCAcc                                                                                          >  1:1815580/1‑100 (MQ=255)

    cTTTATCGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCAcc                                                                                          <  2:1934972/100‑1 (MQ=255)

     tttATCGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCg                                                                                         <  1:1343085/100‑1 (MQ=255)

          cGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAgg                                                                                    >  2:1116961/1‑100 (MQ=255)

           ggggagaATTTCCCGGGTGGTGATGCCTTTTTGGCTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCGGGCGATCTCCCGCCACACATGCTCACCGGAAggg                                                                                   <  2:2226822/97‑1 (MQ=255)

           ggTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAggg                                                                                   <  2:1458925/100‑1 (MQ=255)

           ggTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAggg                                                                                   <  1:1994179/100‑1 (MQ=255)

           ggTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAggg                                                                                   >  2:2151624/1‑100 (MQ=255)

           ggTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACAGGCTCACCGGAAggg                                                                                   >  2:786122/1‑100 (MQ=255)

              gagaATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGcc                                                                                <  2:1934993/100‑1 (MQ=255)

                gaATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAg                                                                              <  2:1523006/100‑1 (MQ=255)

                gaATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAg                                                                              >  2:2139465/1‑100 (MQ=255)

                gaATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAg                                                                              >  2:80146/1‑100 (MQ=255)

                gaATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAg                                                                              >  2:1145277/1‑100 (MQ=255)

                  aTTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACAGGCTCACCGGAAGGGGCCAggg                                                                            >  1:1110189/1‑100 (MQ=255)

                     tCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTg                                                                         >  2:453211/1‑100 (MQ=255)

                        cGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGTGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAAt                                                                      <  2:1491282/100‑1 (MQ=255)

                         gggTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAAtg                                                                     <  2:1761270/100‑1 (MQ=255)

                         gggTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCGCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAAt                                                                      <  2:897459/99‑1 (MQ=255)

                            tggtgATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTgg                                                                  <  1:1321432/100‑1 (MQ=255)

                             ggtgATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTggg                                                                 <  1:2176584/100‑1 (MQ=255)

                             ggtgATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTggg                                                                 <  2:1385630/100‑1 (MQ=255)

                               tgATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGAt                                                               <  1:1793006/100‑1 (MQ=255)

                               tgATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGAt                                                               <  1:720053/100‑1 (MQ=255)

                               tgATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGAt                                                               >  1:1379541/1‑100 (MQ=255)

                                  tGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGc                                                            >  1:1816530/1‑100 (MQ=255)

                                  tGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGc                                                            >  1:274292/1‑100 (MQ=255)

                                  ngCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGc                                                            >  2:2274532/2‑100 (MQ=255)

                                   gCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGcc                                                           <  2:988783/100‑1 (MQ=255)

                                   gCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGcc                                                           <  2:274290/100‑1 (MQ=255)

                                   gCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGcc                                                           <  2:163497/100‑1 (MQ=255)

                                   gCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGcc                                                           <  1:81382/100‑1 (MQ=255)

                                   gCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGcc                                                           <  2:1816525/100‑1 (MQ=255)

                                   gCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGcc                                                           >  2:676945/1‑100 (MQ=255)

                                   gCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGcc                                                           <  1:1397519/100‑1 (MQ=255)

                                   gCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACAGGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGcc                                                           <  2:1062267/100‑1 (MQ=255)

                                     cTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAg                                                         <  1:1532451/100‑1 (MQ=255)

                                     cTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAg                                                         >  1:1881563/1‑100 (MQ=255)

                                     cTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAg                                                         >  2:568770/1‑100 (MQ=255)

                                         ttGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTccc                                                     <  2:1815575/100‑1 (MQ=255)

                                         ttGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTccc                                                     >  2:1670670/1‑100 (MQ=255)

                                          tGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCa                                                    >  1:640431/1‑100 (MQ=255)

                                          tGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCa                                                    >  1:1081069/1‑100 (MQ=255)

                                           gACTCAGGTTCAGCGCAGCTCGCGCGGCAGCTCGGGCGACCTCCGCGCACGCATGCCCACCGGAAGGGCCCGGGGCTGACTGTGGGCTTGCCAGTCCCa                                                    >  2:508387/1‑99 (MQ=255)

                                           gACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCaa                                                   >  1:2101975/1‑100 (MQ=255)

                                            aCTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAAt                                                  <  2:1856239/100‑1 (MQ=255)

                                            aCTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAAt                                                  >  1:348234/1‑100 (MQ=255)

                                            aCTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAAt                                                  <  1:2139472/100‑1 (MQ=255)

                                              tCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATcc                                                >  2:456251/1‑100 (MQ=255)

                                                 ggTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTc                                             >  2:1750869/1‑100 (MQ=255)

                                                  gTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCCCCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAACCCTTCg                                            >  2:468978/1‑100 (MQ=255)

                                                   ttCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCgg                                           <  1:1317147/100‑1 (MQ=255)

                                                   ttCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCgg                                           <  1:1317258/100‑1 (MQ=255)

                                                   ttCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCgg                                           <  1:1670675/100‑1 (MQ=255)

                                                     cAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCTGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCGATCCTTCGGcc                                         <  2:1233202/100‑1 (MQ=255)

                                                     cAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGcc                                         <  1:453213/100‑1 (MQ=255)

                                                     cAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGcc                                         <  2:1379538/100‑1 (MQ=255)

                                                      tctgcAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGcca                                        <  2:627258/97‑1 (MQ=255)

                                                      aGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACAGGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGcca                                        <  1:537195/100‑1 (MQ=255)

                                                         gcAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGccaaga                                     >  1:627259/1‑97 (MQ=255)

                                                            gCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCt                                  <  2:876153/100‑1 (MQ=255)

                                                             cTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTg                                 <  2:1055942/100‑1 (MQ=255)

                                                             cTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTg                                 <  2:1658495/100‑1 (MQ=255)

                                                             cTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTg                                 >  1:1232110/1‑100 (MQ=255)

                                                             cTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTg                                 >  1:2117554/1‑100 (MQ=255)

                                                             cTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTg                                 <  2:162624/100‑1 (MQ=255)

                                                                    ggAAGCTCTGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTc                          >  1:1537876/1‑100 (MQ=255)

                                                                         ctctGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGc                     <  2:1601714/100‑1 (MQ=255)

                                                                           ctGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAg                   >  1:199372/1‑100 (MQ=255)

                                                                           ctGGCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAg                   >  2:470315/1‑100 (MQ=255)

                                                                           ctGGCGATCGCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAg                   <  1:551652/100‑1 (MQ=255)

                                                                             ggCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTg                 >  2:256299/1‑100 (MQ=255)

                                                                             ggCGATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTg                 >  1:10443/1‑100 (MQ=255)

                                                                               ngATCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGcc               >  2:670239/2‑100 (MQ=255)

                                                                               cGATCTCCCGCCACACAGGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGcc               <  2:1110187/100‑1 (MQ=255)

                                                                               cGACCTCCCGCCACACAGGCTCACCGGACGGTGCCAGGGCTTAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTg                 <  2:1586613/98‑1 (MQ=255)

                                                                                 aTCTCCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCa             >  1:940051/1‑100 (MQ=255)

                                                                                   ctcCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCaaa           >  1:1760558/1‑100 (MQ=255)

                                                                                    tcCCGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCaaaa          <  1:520761/100‑1 (MQ=255)

                                                                                     cccGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCaaaaa         >  1:1011786/1‑100 (MQ=255)

                                                                                     cacGCCATACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCaaaaa         >  1:2172209/3‑100 (MQ=255)

                                                                                     cacGCCATACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCaaaaa         >  1:1022218/3‑100 (MQ=255)

                                                                                      ccGCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCAAAAAt        <  1:1720995/100‑1 (MQ=255)

                                                                                        gCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCAAAAATTg      <  1:2274540/100‑1 (MQ=255)

                                                                                        gCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCAAAAATTg      <  2:675241/100‑1 (MQ=255)

                                                                                        gCCACACATGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCAAAAATTg      <  1:1750874/100‑1 (MQ=255)

                                                                                          cacacaTGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCAAAAATTGAc    <  1:2151631/100‑1 (MQ=255)

                                                                                            cacaTGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCAAAAATTGACAg  >  2:1196039/1‑100 (MQ=255)

                                                                                            cacaTGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCAAAAATTGACAg  >  1:625403/1‑100 (MQ=255)

ATCGCTTTATCGGTGAGAATTTCCCGGGTGGTGATGCCTTTTTGACTCAGGTTCAGCGCAGCTCGCGCGGAAGCTCTGGCGATCTCCCGCCACACAGGCTCACCGGAAGGGGCCAGGGCTGAATGTGGGATTGCCAGTCCCAATCCTTCGGCCACCACCTGAGATGTCCCGGCAGTGCCCAAAAATTGACAG  >  NC_000913/4523208‑4523399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A