Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I1 R1
|
117 |
93.2 |
4682243 |
93.4% |
4373214 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,613,506 |
A→T |
H9L (CAC→CTC) |
yjjV → |
putative DNase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,613,506 | 0 | A | T | 98.5%
| 220.7
/ NA
| 67 | H9L (CAC→CTC) | yjjV | putative DNase |
| Reads supporting (aligned to +/- strand): ref base A (1/0); major base T (30/35); minor base C (1/0); total (32/35) |
| Fisher's exact test for biased strand distribution p-value = 4.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GATACGCTGGTTGCCGAAGTGAGCGACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCACTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTCCGGCAAC > NC_000913/4613410‑4613602
|
gATACGCTGGTTGCCGAAGTGAGCGACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTg > 1:342582/1‑100 (MQ=255)
ggTTGCCGAAGTGAGCGACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTg < 2:712808/100‑1 (MQ=255)
gTTGCCGAAGTGAGCGACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGa < 1:1720519/100‑1 (MQ=255)
gAAGTGAGCGACGCTCCGCAGGCGAACGCCCCGACATTTAACAATCGGGAGCTGGCTTGCTTCGCCGTTTTATCGACACTCCCTGCCCTTCTCACTTccc > 2:1939791/1‑100 (MQ=255)
aaGTGAGCGACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCccg < 2:342580/100‑1 (MQ=255)
gTGAGCGACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCccgcc > 1:101835/1‑100 (MQ=255)
aGCGACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGtt > 1:647234/1‑100 (MQ=255)
aGCGACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGtt > 1:2292890/1‑100 (MQ=255)
gACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAg > 2:667315/1‑100 (MQ=255)
cGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTg < 1:1179029/100‑1 (MQ=255)
cGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTg > 1:256709/1‑100 (MQ=255)
cGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCACTTTGATTTCCCGCCGTTTAGTg < 2:1360681/100‑1 (MQ=255)
ccGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGa > 2:814111/1‑100 (MQ=255)
ccGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGa > 2:1322943/1‑100 (MQ=255)
cGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGAt > 1:189122/1‑100 (MQ=255)
gCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGa < 2:976843/98‑1 (MQ=255)
cAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGa > 2:1073747/1‑100 (MQ=255)
cAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGa < 2:308498/100‑1 (MQ=255)
aGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGaa > 1:1028581/1‑100 (MQ=255)
ggCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAag < 2:1201082/100‑1 (MQ=255)
cGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAagag < 2:518733/100‑1 (MQ=255)
tctgACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGc < 1:375368/97‑1 (MQ=255)
aaCGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGc > 2:807913/1‑100 (MQ=255)
aCGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGcc < 1:2170294/100‑1 (MQ=255)
gACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGcaga > 2:375366/1‑97 (MQ=255)
cccGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGcc > 2:427402/1‑100 (MQ=255)
cGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAagagatcggaaga > 1:1826054/1‑91 (MQ=255)
cGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTg < 1:933824/100‑1 (MQ=255)
gACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGc < 1:1628534/100‑1 (MQ=255)
tttAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCa > 2:372803/1‑97 (MQ=255)
tttAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAAcg > 1:217145/1‑100 (MQ=255)
tttAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCACTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAAcg > 1:2324592/1‑100 (MQ=255)
ttAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAAcgc > 2:461464/1‑100 (MQ=255)
tAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAAcgcg > 2:281201/1‑100 (MQ=255)
tAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAAcgcg > 2:114509/1‑100 (MQ=255)
cAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCgg > 2:2160764/1‑100 (MQ=255)
aaTGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGc < 1:427404/100‑1 (MQ=255)
aaTGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGc < 1:1466524/100‑1 (MQ=255)
aTGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGca < 1:1715245/100‑1 (MQ=255)
tGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGcac > 1:1788010/1‑100 (MQ=255)
tCTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCgg < 1:812535/100‑1 (MQ=255)
cTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCggg < 1:2094859/100‑1 (MQ=255)
cTGGCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCggg < 1:2095030/100‑1 (MQ=255)
ggCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCg > 2:1494327/1‑100 (MQ=255)
gCTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGt > 1:1906969/1‑100 (MQ=255)
cTTGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGt < 1:799209/99‑1 (MQ=255)
tGATTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAgg > 1:1036116/1‑100 (MQ=255)
aTTTGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCa < 1:1946974/100‑1 (MQ=255)
tttGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCaa > 2:121947/1‑100 (MQ=255)
ttGCCGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAg < 1:1020138/100‑1 (MQ=255)
cGTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCa < 2:256707/100‑1 (MQ=255)
gTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCAt > 1:765522/1‑100 (MQ=255)
gTTTTATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCAt > 1:476782/1‑100 (MQ=255)
gatctCGACACCCTCTGCCATTTTGAGTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTg < 2:2113683/96‑1 (MQ=255)
ttATCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGt < 2:795637/100‑1 (MQ=255)
aTCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGt < 1:1939798/98‑1 (MQ=255)
tCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTcc < 2:2010615/100‑1 (MQ=255)
tCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTcc > 1:540547/1‑100 (MQ=255)
tCGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTcc < 2:647233/100‑1 (MQ=255)
cGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTgggatc > 1:2113690/1‑95 (MQ=255)
cGACACCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTCCg < 2:1020612/100‑1 (MQ=255)
acacCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTCCGGc < 1:114511/100‑1 (MQ=255)
acacCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTCCGGc < 1:312387/100‑1 (MQ=255)
acacCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTCCGGc < 1:711366/100‑1 (MQ=255)
acacCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTCCGGc < 1:807915/100‑1 (MQ=255)
cacCCTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTCCGGc < 1:667316/99‑1 (MQ=255)
cccTCTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTCCGGCAAc < 1:7425/100‑1 (MQ=255)
|
GATACGCTGGTTGCCGAAGTGAGCGACGCTCCGCAGGCGAACGACCCGACATTTAACAATGAGGATCTGGCTTGATTTGCCGTTTTATCGACACCCACTGCCATTTTGATTTCCCGCCGTTTAGTGGCGATGAAGAGGCCAGCCTGCAACGCGCGGCACAAGCGGGCGTAGGCAAGATCATTGTTCCGGCAAC > NC_000913/4613410‑4613602
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
