Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F50 I2 R1 12 74.5 2311211 99.4% 2297343 150.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,911,366 +T coding (160/1041 nt) pstS ← phosphate ABC transporter periplasmic binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,911,3641.T100.0% 264.2 / NA 68N54K (AAT→AAA) pstSphosphate ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (39/29);  total (39/29)

CACGCCGCCAATCACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTA‑TTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGG  >  NC_000913/3911214‑3911509
                                                                                                                                                       |                                                                                                                                                 
cacGCCGCCAATCACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTtta                                                                                                                                                    <  1:620762/151‑1 (MQ=255)
 acGCCGCCAATCACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTtta‑t                                                                                                                                                  >  2:184256/1‑151 (MQ=255)
 acGCCGCCAATCACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTtta‑t                                                                                                                                                  >  1:499176/1‑151 (MQ=255)
  cgccgcCAATCACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTtta‑tt                                                                                                                                                 >  2:1043314/1‑151 (MQ=255)
      gccAATCACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTtta‑tttacc                                                                                                                                             >  1:1123555/1‑147 (MQ=255)
       ccAATCACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTtta‑tttaccg                                                                                                                                            <  1:1137200/151‑6 (MQ=255)
        cAATCACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCgg                                                                                                                                            >  1:101940/1‑151 (MQ=255)
            cACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGtttc                                                                                                                                        <  1:626879/151‑1 (MQ=255)
              cGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGtttctt                                                                                                                                      <  2:46176/151‑1 (MQ=255)
              cGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGtttctt                                                                                                                                      <  1:882133/151‑1 (MQ=255)
              cGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGtttct                                                                                                                                       <  1:1099358/150‑1 (MQ=255)
                 tCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTttctttct                                                                                                                                   >  1:653205/1‑151 (MQ=255)
                  cGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTg                                                                                                                                  >  1:946750/1‑151 (MQ=255)
                     gAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGt                                                                                                                                >  2:535418/1‑150 (MQ=255)
                         tGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAgtg                                                                                                                           >  2:992640/1‑151 (MQ=255)
                         tGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAgtg                                                                                                                           >  2:852897/1‑151 (MQ=255)
                          ggAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAgtg                                                                                                                           <  2:1062437/150‑1 (MQ=255)
                             aCAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGGAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTc                                                                                                                         >  2:627934/1‑149 (MQ=255)
                                 aCCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGccc                                                                                                                    >  1:370784/1‑150 (MQ=255)
                                 aCCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCa                                                                                                                   <  2:16018/151‑1 (MQ=255)
                                  ccTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCAt                                                                                                                  <  2:954121/151‑1 (MQ=255)
                                         gAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGc                                                                                                             <  1:57602/149‑1 (MQ=255)
                                         gAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCAt                                                                                                           <  1:258647/151‑1 (MQ=255)
                                          aGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCAt                                                                                                           >  1:346700/1‑150 (MQ=255)
                                              aGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAcc                                                                                                      >  1:205200/1‑151 (MQ=255)
                                                 ttttCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCgg                                                                                                    <  2:75927/150‑1 (MQ=255)
                                                    tCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGgcgc                                                                                                 <  1:705153/150‑1 (MQ=255)
                                                       tCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAggg                                                                                             >  1:685222/1‑151 (MQ=255)
                                                         aGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGa                                                                                            >  1:878743/1‑150 (MQ=255)
                                                           aCAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAgg                                                                                         >  2:41469/1‑151 (MQ=255)
                                                                 gcgcGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTtgcac                                                                                   >  2:484149/1‑151 (MQ=255)
                                                                    cgTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTtgcacctg                                                                                >  2:169684/1‑151 (MQ=255)
                                                                       cAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTtgcacctgcac                                                                             >  2:169591/1‑151 (MQ=255)
                                                                        agagGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTtgcacctgcacc                                                                            <  1:111188/151‑1 (MQ=255)
                                                                        agagGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTtgcacctgcacc                                                                            >  2:276319/1‑151 (MQ=255)
                                                                         gagGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTgcacctgcacct                                                                           <  1:551208/151‑1 (MQ=255)
                                                                            gCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTc                                                                        >  2:479584/1‑151 (MQ=255)
                                                                             cACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTc                                                                        >  1:226484/1‑150 (MQ=255)
                                                                              aCCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAg                                                                      <  1:340047/151‑1 (MQ=255)
                                                                                 aaaaTCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGgct                                                                   <  2:387244/151‑1 (MQ=255)
                                                                                 aaaaTCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGgct                                                                   >  2:843465/1‑151 (MQ=255)
                                                                                  aaaTCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGgctt                                                                  >  1:115794/1‑151 (MQ=255)
                                                                                               tAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAac                                                      >  1:462314/1‑150 (MQ=255)
                                                                                                aGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAacac                                                    <  2:81778/151‑1 (MQ=255)
                                                                                                aGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAacac                                                    >  2:960710/1‑151 (MQ=255)
                                                                                                 gCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAacac                                                    >  1:560456/1‑150 (MQ=255)
                                                                                                   gATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACaga                                                 <  2:749241/151‑1 (MQ=255)
                                                                                                    aTAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGATTCTGCAAACACagag                                                <  2:19699/151‑1 (MQ=255)
                                                                                                      aaTCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAgaga                                               >  1:120155/1‑150 (MQ=255)
                                                                                                           gTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCAc                                         >  2:214815/1‑151 (MQ=255)
                                                                                                              ttACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTc                                       >  1:869326/1‑150 (MQ=255)
                                                                                                              ttACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTc                                       >  2:750867/1‑150 (MQ=255)
                                                                                                                 cGCCAGAGGAAGAACCGATAAGCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTCGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCg                                   >  1:157990/1‑151 (MQ=255)
                                                                                                                 cGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCg                                   <  2:1067371/151‑1 (MQ=255)
                                                                                                                     aCCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATaa                               <  2:249205/151‑1 (MQ=255)
                                                                                                                     aCCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATa                                >  1:887240/1‑150 (MQ=255)
                                                                                                                     aCCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATa                                >  2:203875/1‑150 (MQ=255)
                                                                                                                     aCCGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATa                                >  2:774036/1‑150 (MQ=255)
                                                                                                                      ccGGAAGAACCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCGTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGTAAGGTGGCACCTGCACCTGTCAGGCTTGCTTTTGCAAACACAGAGAAAGCACTCATCGATaa                               <  1:749698/150‑1 (MQ=255)
                                                                                                                         gaagaaCCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTc                           <  2:213216/151‑1 (MQ=255)
                                                                                                                           agaaCCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTcgc                         >  1:809925/1‑151 (MQ=255)
                                                                                                                             aaCCGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCgcgg                       <  1:61212/151‑1 (MQ=255)
                                                                                                                               ccGATACCCTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCgcggcg                     <  1:191907/151‑1 (MQ=255)
                                                                                                                                     cccTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGacaaca               <  2:877163/151‑1 (MQ=255)
                                                                                                                                     cccTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGacaac                >  2:812299/1‑150 (MQ=255)
                                                                                                                                      ccTGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGacaac                >  1:295231/1‑149 (MQ=255)
                                                                                                                                        tGGTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGtt            >  1:655836/1‑151 (MQ=255)
                                                                                                                                          gTAGTTAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGc          <  1:843327/151‑1 (MQ=255)
                                                                                                                                               tAACTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACg      <  2:719142/150‑1 (MQ=255)
                                                                                                                                                 aCTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACggtg   >  2:768220/1‑151 (MQ=255)
                                                                                                                                                 aCTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACggtg   <  1:528373/151‑1 (MQ=255)
                                                                                                                                                 aCTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACggtg   <  1:35648/151‑1 (MQ=255)
                                                                                                                                                 aCTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACggtg   >  1:307122/1‑151 (MQ=255)
                                                                                                                                                  cTTTATTTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACggtgg  >  2:13337/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                 
CACGCCGCCAATCACGGTCGGGAACTGGAACAGACCTTCCTGAGCCAGTTTTTCGTCAGACAGCGGCGCGTCAGAGGCACCAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTA‑TTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGG  >  NC_000913/3911214‑3911509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A