Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F50 I3 R1 15 77.6 2407323 99.3% 2390471 150.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,816,611 C→A intergenic (‑62/‑65) rph ← / → yicC ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,816,6110CA100.0% 271.3 / NA 74intergenic (‑62/‑65)rph/yicCribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (42/32);  total (42/32)

CACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATGCGCTCGGTAA  >  NC_000913/3816466‑3816757
                                                                                                                                                 |                                                                                                                                                  
cACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATc                                                                                                                                               >  1:536944/1‑151 (MQ=255)
 aCCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATcc                                                                                                                                              >  2:51193/1‑151 (MQ=255)
          tCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAgg                                                                                                                                      <  1:9172/150‑1 (MQ=255)
           cTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAg                                                                                                                                       <  2:609309/148‑1 (MQ=255)
             gCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATc                                                                                                                                  <  2:833227/151‑1 (MQ=255)
                     tGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCt                                                                                                                           >  2:410544/1‑150 (MQ=255)
                        ataGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATaa                                                                                                                       <  1:347794/151‑1 (MQ=255)
                            ttACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCt                                                                                                                   >  2:782970/1‑151 (MQ=255)
                                gAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTcc                                                                                                                >  1:573401/1‑150 (MQ=255)
                                     aGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACctct                                                                                                          <  2:201111/151‑1 (MQ=255)
                                     aGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACctc                                                                                                           >  1:874129/1‑150 (MQ=255)
                                        gTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCt                                                                                                       >  2:336903/1‑151 (MQ=255)
                                          aaCGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCTGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCtg                                                                                                      <  1:375619/150‑2 (MQ=255)
                                             gggACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTtat                                                                                                  <  2:202997/151‑1 (MQ=255)
                                              ggACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTtata                                                                                                 <  2:952411/151‑1 (MQ=255)
                                              ggACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTtata                                                                                                 <  1:416023/151‑1 (MQ=255)
                                               gACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTtata                                                                                                 >  2:788871/1‑150 (MQ=255)
                                                         attattGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGt                                                                                      >  1:680268/1‑151 (MQ=255)
                                                           tattGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTc                                                                                     <  1:1067751/150‑1 (MQ=255)
                                                              tGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTAt                                                                                  <  1:170173/150‑1 (MQ=255)
                                                               gCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGa                                                                                <  2:373828/151‑1 (MQ=255)
                                                                   cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCg                                                                            <  1:1047644/151‑1 (MQ=255)
                                                                    cgCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCCTCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCg                                                                            >  1:809408/2‑150 (MQ=255)
                                                                     gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGc                                                                           >  2:30764/1‑150 (MQ=255)
                                                                     gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGc                                                                           >  2:957988/1‑150 (MQ=255)
                                                                     gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGc                                                                           >  1:444483/1‑150 (MQ=255)
                                                                         gctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTAt                                                                      <  2:922605/151‑1 (MQ=255)
                                                                           tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATg                                                                     >  1:320524/1‑150 (MQ=255)
                                                                            ggACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGa                                                                    <  1:999099/150‑1 (MQ=255)
                                                                            ggACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGAc                                                                   >  1:758889/1‑151 (MQ=255)
                                                                            ggACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGAc                                                                   >  1:457222/1‑151 (MQ=255)
                                                                             gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGAcc                                                                  <  2:1193919/151‑1 (MQ=255)
                                                                                 cATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGcc                                                               >  1:546861/1‑150 (MQ=255)
                                                                                   tatTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTAc                                                            >  2:854650/1‑151 (MQ=255)
                                                                                    atTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTAc                                                            <  2:247486/150‑1 (MQ=255)
                                                                                    atTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACg                                                           <  1:438575/151‑1 (MQ=255)
                                                                                        aaaTCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCg                                                       <  2:874158/151‑1 (MQ=255)
                                                                                         aaTCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCgg                                                      >  1:1072144/1‑151 (MQ=255)
                                                                                          aTCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGc                                                     >  2:1000183/1‑151 (MQ=255)
                                                                                            ctcCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCg                                                    >  2:457064/1‑150 (MQ=255)
                                                                                              ccGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTg                                                  <  1:153382/150‑1 (MQ=255)
                                                                                              ccGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTg                                                  >  1:604986/1‑150 (MQ=255)
                                                                                                    tGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCTCCTTTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATc                                             <  2:1135745/149‑1 (MQ=255)
                                                                                                    tGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCa                                            >  2:954453/1‑150 (MQ=255)
                                                                                                    tGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCa                                            <  2:81627/150‑1 (MQ=255)
                                                                                                      aaaCAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAgg                                         <  2:248599/151‑1 (MQ=255)
                                                                                                       aaCAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAggg                                        >  2:658455/1‑151 (MQ=255)
                                                                                                        aCAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAggg                                        >  2:707071/1‑150 (MQ=255)
                                                                                                         cAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTg                                      >  2:156461/1‑151 (MQ=255)
                                                                                                          aaaTGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTg                                      >  1:390884/1‑150 (MQ=255)
                                                                                                               tgGCTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATggg                                >  1:968504/1‑151 (MQ=255)
                                                                                                                ggCTGCGCATTATACGGACTTCCGGCGGTTATTACTAACCTGACAAGGCATCGAGGGCTATAATCCTGCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATggg                                <  2:1200847/150‑1 (MQ=255)
                                                                                                                  cTGCGCATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATggggg                              >  1:1111375/1‑150 (MQ=255)
                                                                                                                     cgcATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAgcg                          <  2:1064842/151‑1 (MQ=255)
                                                                                                                      gcATTATACGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAgcgc                         >  2:901858/1‑151 (MQ=255)
                                                                                                                         ttATACGGACTTCCGGCGGTTATTACTATCCTGACAAAGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGGGAAATCAAGGGGGAATGGGGGAGCGCaa                       >  1:83599/1‑150 (MQ=255)
                                                                                                                          tataCGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAAcc                     >  2:327802/1‑151 (MQ=255)
                                                                                                                           ataCGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCt                    <  2:325408/151‑1 (MQ=255)
                                                                                                                              cGGACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTggg                 <  1:313110/151‑1 (MQ=255)
                                                                                                                               ggACTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGa                <  1:11628/151‑1 (MQ=255)
                                                                                                                                gACTTCCGGCGGATATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTggg                 >  2:652867/1‑149 (MQ=255)
                                                                                                                                 aCTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGaaa              <  1:973051/151‑1 (MQ=255)
                                                                                                                                  cTTCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGaa               >  2:27140/1‑149 (MQ=255)
                                                                                                                                    tCCGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACTCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCCACCTGGGaaa              >  2:424390/1‑148 (MQ=255)
                                                                                                                                     ccGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATgcg          >  2:322858/1‑151 (MQ=255)
                                                                                                                                     ccGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATgcg          >  1:1057570/1‑151 (MQ=255)
                                                                                                                                     ccGGCGGTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATgcg          <  2:1048902/151‑1 (MQ=255)
                                                                                                                                       ggcggGTATTACGATCCTGGCAAAGCATCGATGGCTATAATTCTTCCACCTCTCCTTTTATAAACAGGAACCTCCATGATCGGCATGATTACCGCCTACGCCCCGCGTGAAATCAAGGGTGGATGGGGGAGTGCAACATGGGGAATgc           >  1:711741/1‑148 (MQ=255)
                                                                                                                                        gcggTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATGCGCTc       >  1:536252/1‑151 (MQ=255)
                                                                                                                                          ggTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATGCGCTCgg     <  1:101921/151‑1 (MQ=255)
                                                                                                                                           gTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATGCGCTCGGt    <  1:439070/151‑1 (MQ=255)
                                                                                                                                           gTTATTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATGCGCTCGGt    >  2:351531/1‑151 (MQ=255)
                                                                                                                                            ttattaCTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATGCGCTCGGt    >  2:698488/1‑150 (MQ=255)
                                                                                                                                              aTTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATGCGCTCGGTaa  >  2:1041568/1‑150 (MQ=255)
                                                                                                                                              aTTACTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATGCGCTCGGTaa  >  2:835559/1‑150 (MQ=255)
                                                                                                                                                 |                                                                                                                                                  
CACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGGGAAATGCGCTCGGTAA  >  NC_000913/3816466‑3816757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A