Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F50 I1 R1
|
121 |
119.5 |
3777739 |
97.6% |
3687073 |
150.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,596,244 |
A→G |
pseudogene (1744/3861 nt) |
yneO ← |
pseudogene, AidA homolog |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,596,244 | 0 | A | G | 99.1%
| 405.9
/ NA
| 108 | pseudogene (1744/3861 nt) | yneO | pseudogene, AidA homolog |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (47/60); total (48/60) |
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 108 total aligned reads displayed.
CGTCGCATTGGTGATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAACGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTAATATTC > NC_000913/1596101‑1596389
|
cgtcgCATTGGTGATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGcgtaccc < 1:23388/151‑1 (MQ=255)
gCATTGGTGATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGcgtacccgtac < 2:357700/151‑1 (MQ=255)
gCATTGGTGATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGcgtacccgta < 2:938192/150‑1 (MQ=255)
ttGGTGATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGcgtacccgtacc > 2:434579/1‑149 (MQ=255)
tGGTGATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGcgtacccgtacc > 3:505693/1‑148 (MQ=255)
tGGTGATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGcgtacccgtacc > 2:905081/1‑148 (MQ=255)
ggTGATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGAt < 3:814579/151‑1 (MQ=255)
gATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTc < 2:301794/151‑1 (MQ=255)
tAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTccc > 2:1325316/1‑151 (MQ=255)
aaaTCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAACGTACCCGTACCAGATGTCCCt > 1:147235/1‑151 (MQ=255)
aaTCCGGCATCCGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCt > 3:443367/1‑150 (MQ=255)
aTCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTAc < 3:1092371/151‑1 (MQ=255)
ccGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACg < 4:239819/150‑1 (MQ=255)
ccGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGt < 2:6389/151‑1 (MQ=255)
aTCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACat > 2:1218205/1‑150 (MQ=255)
cTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATAtt > 2:82498/1‑151 (MQ=255)
tGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTg > 3:378740/1‑151 (MQ=255)
gccgccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATAtt < 4:52338/149‑1 (MQ=255)
gccgccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATAtt < 4:342132/149‑1 (MQ=255)
gccgccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATAtt < 4:371136/149‑1 (MQ=255)
cgccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCCCCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAAt < 3:499408/151‑1 (MQ=255)
cgccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAAt < 2:382598/151‑1 (MQ=255)
ccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATg < 3:33001/150‑1 (MQ=255)
ccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGt < 3:441986/151‑1 (MQ=255)
ccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGt < 3:1075207/151‑1 (MQ=255)
ccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGt < 2:964875/151‑1 (MQ=255)
ccgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGt < 2:657220/151‑1 (MQ=255)
cgccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGtt < 2:1258982/151‑1 (MQ=255)
ccTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTc < 2:49131/151‑1 (MQ=255)
cTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTc > 3:1143393/1‑150 (MQ=255)
tCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCa > 2:1380895/1‑150 (MQ=255)
tCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCa > 2:277470/1‑150 (MQ=255)
aCCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCaaga < 3:434612/151‑1 (MQ=255)
aCCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCaaga < 3:68320/151‑1 (MQ=255)
ccGTGAGCAGCGCCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCaaga > 3:1177115/1‑150 (MQ=255)
ccGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCaagaa < 2:549824/151‑1 (MQ=255)
ccGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCaaga < 3:225385/150‑1 (MQ=255)
gTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAagaaga < 1:154088/151‑1 (MQ=255)
gAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCaagaag > 2:925198/1‑148 (MQ=255)
gAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAagag < 3:1113651/150‑1 (MQ=255)
gAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAagag < 3:934327/150‑1 (MQ=255)
gcagcaCCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACa < 2:453589/127‑1 (MQ=255)
gcagcaCCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACa > 3:453623/1‑127 (MQ=255)
cagcaCCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGtt < 1:7927/151‑1 (MQ=255)
gcaCCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCt > 1:223174/1‑151 (MQ=255)
gcaCCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCt < 2:1350007/151‑1 (MQ=255)
aTGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCAt > 2:1296440/1‑151 (MQ=255)
aTGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCAt > 2:429339/1‑151 (MQ=255)
gTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATc < 1:476700/150‑1 (MQ=255)
cGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTc < 3:825167/151‑1 (MQ=255)
gTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCa < 3:492695/151‑1 (MQ=255)
tCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCAc < 3:925106/150‑1 (MQ=255)
ccTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACg < 1:234013/150‑1 (MQ=255)
cagcagGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGcc < 2:1255535/151‑1 (MQ=255)
agGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCtt > 4:139081/1‑150 (MQ=255)
gCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACt > 3:696241/1‑151 (MQ=255)
gCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACt > 2:654044/1‑151 (MQ=255)
gCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACt < 3:942235/151‑1 (MQ=255)
cAAAAACACCTAAGTAAACTTCTCCACCTTCGACATCCAGCGTACCGTTATTCGTCAAGGTTAGCTTACCCGTTCCAGATGTCCCTACGTACATATGGAATGTTTAAAGAAGAGAGTTCTGCCCAACCCCCCGCACGTCGCCCTTAc < 3:747213/147‑1 (MQ=255)
aaaaaCACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTg < 3:1325386/151‑1 (MQ=255)
cacCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACtttt < 1:226235/145‑1 (MQ=255)
cacCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACtttt > 4:226233/1‑145 (MQ=255)
cacCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCAtt < 4:442326/151‑1 (MQ=255)
acCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTg > 2:716246/1‑151 (MQ=255)
ccTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTga < 2:209022/151‑1 (MQ=255)
aaGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTgag < 2:304574/149‑1 (MQ=255)
gTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCt < 1:114279/151‑1 (MQ=255)
tAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCt > 3:909892/1‑150 (MQ=255)
aaaCTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTa < 1:96910/150‑1 (MQ=255)
aCTTCTCCCCCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCt < 3:988516/151‑1 (MQ=255)
aCTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCt < 3:961460/151‑1 (MQ=255)
tctcCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCtg < 4:260090/149‑1 (MQ=255)
tcCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTgtgt > 1:226757/1‑150 (MQ=255)
ccACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTgtgt < 2:341501/149‑1 (MQ=255)
cACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATc > 2:1390160/1‑151 (MQ=255)
cACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATc < 3:1296509/151‑1 (MQ=255)
cACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATc > 2:1106392/1‑151 (MQ=255)
cTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCAcg > 1:86694/1‑151 (MQ=255)
ttCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCAcg > 1:226080/1‑150 (MQ=255)
tCGACATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCAcgc < 3:1218266/150‑1 (MQ=255)
aCATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCtt > 3:695963/1‑151 (MQ=255)
aCATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCtt > 2:17718/1‑151 (MQ=255)
aCATTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTCCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCtt > 2:1117213/1‑151 (MQ=255)
aTTCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTa < 3:925233/151‑1 (MQ=255)
ttCAGCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTa > 3:10010/1‑150 (MQ=255)
gCGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACtat > 4:40741/1‑151 (MQ=255)
cGTACCGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACtat > 3:429077/1‑150 (MQ=255)
cGTTATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTcc > 2:470428/1‑151 (MQ=255)
tATTCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCggt > 1:313001/1‑151 (MQ=255)
ttCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCggtg < 2:1140180/150‑1 (MQ=255)
tCGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCggtggt > 3:583975/1‑151 (MQ=255)
cGTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCggtggt > 4:446768/1‑150 (MQ=255)
gTCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTaa < 2:378705/151‑1 (MQ=255)
tCAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTAat > 3:721301/1‑151 (MQ=255)
cAGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTAat > 3:1096639/1‑150 (MQ=255)
aGGGTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTAatat > 1:326869/1‑151 (MQ=255)
gggTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTAATAtt > 3:1277133/1‑151 (MQ=255)
ggTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTAATATTc > 3:466647/1‑151 (MQ=255)
gTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTAATATTc > 1:323483/1‑150 (MQ=255)
gTTAGCGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTAATATTc > 3:334739/1‑150 (MQ=255)
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CGTCGCATTGGTGATAAATCCGGCATCTGCCGCCGCCTCACCGTGAGCAGCACCAATGTTTAGCGTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACCTTCGACATTCAGCGTACCGTTATTCGTCAGGGTTAACGTACCCGTACCAGATGTCCCTACGTACATATTGAATGTTTCAAGAAGAGAGTTCTGCCCATCCACCCTCACGTCGCCCTTACTTTTGTCATTGAGAGCTATCTGTGTATCACGCGCTTTAACTATACCTCCGGTGGTAATATTC > NC_000913/1596101‑1596389
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
