Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F50 I1 R1
|
141 |
76.7 |
2402765 |
98.4% |
2364320 |
150.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
666,076 |
T→C |
I80V (ATC→GTC) |
mrdB ← |
cell wall shape‑determining protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 666,076 | 0 | T | C | 100.0%
| 217.8
/ NA
| 55 | I80V (ATC→GTC) | mrdB | cell wall shape‑determining protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (26/29); total (26/29) |
GATAAAGCGCGCAACCATCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGATATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTCCAGATAACCAGGGCGCT > NC_000913/665930‑666223
|
gATAAAGCGCGCAACCATCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGAcata < 1:1029809/150‑1 (MQ=255)
tAAAGCGCGCAACCATCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATag > 1:277770/1‑149 (MQ=255)
aaaGCGCGCAACCATCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATagag < 2:712717/150‑1 (MQ=255)
aaGCGCGCAACCATCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATag > 1:451544/1‑147 (MQ=255)
aaCCATCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGcc > 2:54704/1‑151 (MQ=255)
aaCCATCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGc < 1:243346/150‑1 (MQ=255)
ccATCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGccc > 2:868423/1‑150 (MQ=255)
aTCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGc > 1:612485/1‑151 (MQ=255)
cAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCt > 2:702341/1‑151 (MQ=255)
aGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCtt < 1:309131/151‑1 (MQ=255)
aGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCtt < 2:483696/151‑1 (MQ=255)
tGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTc > 1:299749/1‑150 (MQ=255)
ggTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCa < 1:318575/150‑1 (MQ=255)
cGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAAc < 2:152249/151‑1 (MQ=255)
ggCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAAc > 1:1199891/1‑150 (MQ=255)
gCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAAcgc < 2:405857/151‑1 (MQ=255)
aTTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAAcgcg < 2:260580/149‑1 (MQ=255)
ttttGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTgg > 2:587241/1‑151 (MQ=255)
tGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTggag < 2:1110200/150‑1 (MQ=255)
tGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTggag < 1:287219/150‑1 (MQ=255)
tCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTgcg > 2:878255/1‑151 (MQ=255)
gAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATcacc < 2:1156876/149‑1 (MQ=255)
cGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCatga < 2:505128/151‑1 (MQ=255)
aaCAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCatgatg < 1:735857/151‑1 (MQ=255)
aaTACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGAcc < 2:469168/151‑1 (MQ=255)
aCCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGAcc > 2:860693/1‑148 (MQ=255)
ccGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGCGGAATTTGCGCCATCACCACCAGGATGACCAgcc > 2:232995/1‑149 (MQ=255)
ccGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGAc < 2:522272/151‑1 (MQ=255)
ggTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCAt < 2:743343/151‑1 (MQ=255)
gTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATc < 2:683659/151‑1 (MQ=255)
gTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATc < 1:924121/151‑1 (MQ=255)
cagccagcGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATcgcg < 2:648839/151‑1 (MQ=255)
tGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCg < 1:78096/150‑1 (MQ=255)
gAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGAt > 2:671366/1‑151 (MQ=255)
aCCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTa < 2:380864/151‑1 (MQ=255)
tGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCcatca < 2:415392/150‑1 (MQ=255)
ggCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATg < 2:1089281/151‑1 (MQ=255)
ggCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATg < 2:952398/151‑1 (MQ=255)
aaaGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAatat > 2:723930/1‑151 (MQ=255)
aaaGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAatat > 1:1083749/1‑151 (MQ=255)
aaaGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAatat < 1:587612/151‑1 (MQ=255)
aaaGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAatat > 2:1132319/1‑151 (MQ=255)
aaGCATCTACCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATc > 1:705869/1‑151 (MQ=255)
aCCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGAcc < 1:311755/149‑1 (MQ=255)
aCCGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGc > 1:78183/1‑151 (MQ=255)
cGCCACCAGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTg < 2:984323/151‑1 (MQ=255)
caccaGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGgcg > 2:574094/1‑151 (MQ=255)
accaGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGgcgc > 2:534861/1‑151 (MQ=255)
caGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTc > 2:1181046/1‑151 (MQ=255)
caGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTc > 2:806327/1‑151 (MQ=255)
aGCAAAATAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTcc > 2:438716/1‑151 (MQ=255)
aaaaTAATACAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTcc > 2:789620/1‑148 (MQ=255)
aataCAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTCCAGATAAcc < 2:57408/151‑1 (MQ=255)
ataCAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTCCAGATAACCa < 2:618488/151‑1 (MQ=255)
taCAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTCCAGATAAcc > 2:28000/1‑149 (MQ=255)
aCAGATGACATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTCCAGATAACCAgg > 2:1027912/1‑151 (MQ=255)
gatgacATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTCCAGATAACCAGGgcg < 2:443042/151‑1 (MQ=255)
tgacATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTCCAGATAACCAGGGCGCt > 2:68039/1‑151 (MQ=255)
tgacATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTCCAGATAACCAGGGCGCt > 1:850149/1‑151 (MQ=255)
|
GATAAAGCGCGCAACCATCAGTGGTACGGCTATTTTGGCAATTTCCGACGGCTGAAAACGAACAATACCGAGGTCCAGCCAGCGTTGAGCACCTTTAGAGATGGCACCGAAAGCATCTACCGCCACCAGCAAAATAATACAGATGATATAGAGATAGGGGGCCCAGCCTTCATAAACGCGTGGAGGAATTTGCGCCATCACCACCATGATGACCAGACCCATCGCGATTTGGCCGATTTTACGCTCCATCATGCCAATATCCTGACCGCTGGCGCTCCAGATAACCAGGGCGCT > NC_000913/665930‑666223
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A