Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I2 R1 139 64.5 2139856 92.7% 1983646 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 852,223 T→C I125M (ATA→ATG)  opgE ← OPG biosynthetic transmembrane phosphoethanolamine transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913852,2230TC100.0% 233.5 / NA 62I125M (ATA→ATG) opgEOPG biosynthetic transmembrane phosphoethanolamine transferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/31);  total (31/31)

GATAGCCAGTATCTTTCAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCTATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGCCGTAGGCCTGAGCAAAAGG  >  NC_000913/852075‑852369
                                                                                                                                                    |                                                                                                                                                  
gATAGCCAGTATCTTTCAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCAt                                                                                                                                                  >  1:943708/1‑151 (MQ=255)
   aGCCAGTATCTTTCAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTAc                                                                                                                                               >  1:474011/1‑151 (MQ=255)
     ccAGTATCTTTCAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACTCTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGc                                                                                                                                             <  2:651145/151‑1 (MQ=255)
      cAGTATCTTTCAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTC‑TTTTTTCGCCTGATTGCCATTACGCCg                                                                                                                                           <  1:1024262/151‑1 (MQ=255)
           tCTTTCAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAgcg                                                                                                                                       >  2:676949/1‑151 (MQ=255)
              ttCAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAgc                                                                                                                                        <  1:460119/147‑1 (MQ=255)
               tCAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAgcgc                                                                                                                                      <  2:856396/148‑1 (MQ=255)
                cAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCaaa                                                                                                                                   <  2:262021/150‑1 (MQ=255)
                     tAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAaaataa                                                                                                                              <  1:994329/150‑1 (MQ=255)
                       aaTACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAaaataaat                                                                                                                            >  1:980663/1‑150 (MQ=255)
                            gCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCg                                                                                                                      <  1:1016396/151‑1 (MQ=255)
                             ccACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGa                                                                                                                     <  1:51960/151‑1 (MQ=255)
                               aCCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGAcc                                                                                                                   >  1:190233/1‑151 (MQ=255)
                                 cccAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGAcc                                                                                                                   >  1:76011/1‑149 (MQ=255)
                                  ccaggccaggTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAgg                                                                                                                >  1:261930/1‑151 (MQ=255)
                                   caggccaggTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGcc                                                                                                                       <  1:536666/143‑1 (MQ=255)
                                   caggccaggTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGcc                                                                                                                       >  2:536635/1‑143 (MQ=255)
                                                  aCGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGaa                                                                                                <  2:399503/151‑1 (MQ=255)
                                                  aCGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGa                                                                                                 >  1:575088/1‑150 (MQ=255)
                                                    gggAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGaaa                                                                                               >  2:603297/1‑150 (MQ=255)
                                                                  aTGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTc                                                                                >  1:755677/1‑151 (MQ=255)
                                                                    gTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCg                                                                               <  1:141488/150‑1 (MQ=255)
                                                                      cGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTc                                                                            <  2:825255/151‑1 (MQ=255)
                                                                          acacTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCg                                                                           <  1:836068/148‑1 (MQ=255)
                                                                          acacTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCg                                                                           >  2:836022/1‑148 (MQ=255)
                                                                           cacTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGActc                                                                       >  1:5841/1‑151 (MQ=255)
                                                                               gAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCtt                                                                     <  1:92031/149‑1 (MQ=255)
                                                                                   aCCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCatat                                                               <  2:2646/151‑1 (MQ=255)
                                                                                       gACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATtggt                                                           <  2:706116/151‑1 (MQ=255)
                                                                                          acaGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATtggtgg                                                         >  1:917629/1‑150 (MQ=255)
                                                                                           caGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATtggtgg                                                         >  1:362902/1‑149 (MQ=255)
                                                                                           caGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAg                                                       <  2:941726/151‑1 (MQ=255)
                                                                                            aGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAg                                                       >  2:293692/1‑150 (MQ=255)
                                                                                             ggCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTg                                                     <  1:62321/151‑1 (MQ=255)
                                                                                                tGTCGAAGGTATTCCAGCGCGCTTTTTCAGTCTCTTTTTTTCGCCTGATGGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCa                                                   >  1:513079/1‑150 (MQ=255)
                                                                                                    taaGGTATTCCTGCGCGCTTTTTCATTATCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCTACCAGGTTGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCGTCCATATTGGTGGAGTGCAATGc                                               >  2:169503/2‑150 (MQ=255)
                                                                                                    gAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGcc                                              <  1:921118/151‑1 (MQ=255)
                                                                                                    gAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAAGCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGct                                              <  2:161301/151‑2 (MQ=255)
                                                                                                      aGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGcc                                              >  2:851704/1‑149 (MQ=255)
                                                                                                      aGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGcc                                              >  2:807982/1‑149 (MQ=255)
                                                                                                        gTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGc                                           >  1:879811/1‑150 (MQ=255)
                                                                                                          aTTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAAt                                        <  2:413246/151‑1 (MQ=255)
                                                                                                             ccAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGt                                      >  1:385779/1‑150 (MQ=255)
                                                                                                              cAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTAt                                    >  2:434847/1‑151 (MQ=255)
                                                                                                              cAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTAt                                    >  2:609808/1‑151 (MQ=255)
                                                                                                               aGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTAtt                                   <  2:266413/151‑1 (MQ=255)
                                                                                                                    gcTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGTAATGCCAGCAATGTATTAAAAt                              <  2:463319/151‑1 (MQ=255)
                                                                                                                    gcTTTTTCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAAt                              <  1:584520/151‑1 (MQ=255)
                                                                                                                       ttttCATTCTCTTTTTTTCGCCTGATTGCCATTGCGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAAtt                             <  1:413750/149‑1 (MQ=255)
                                                                                                                       ttttCATTCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTa                            <  2:424781/150‑1 (MQ=255)
                                                                                                                          tCATTCTCTTTTTTTCGCCTGCTTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGTTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGCAATTAGgcg                        >  2:1026229/1‑151 (MQ=255)
                                                                                                                             ttCTCTTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATATGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGgcgcg                      >  2:256370/1‑150 (MQ=255)
                                                                                                                                 ctTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGcca                   <  2:737991/149‑2 (MQ=255)
                                                                                                                                 ctTTTTTTCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGCCg                   <  2:362876/149‑1 (MQ=255)
                                                                                                                                   ttttttCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCCGCAATGTATTGAAATTAGgcgcgaaa                   <  2:543758/147‑4 (MQ=255)
                                                                                                                                     ttttCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGCCGTAgga              <  2:563389/150‑2 (MQ=255)
                                                                                                                                     ttttCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGCCGTAGGcc             >  2:898352/1‑151 (MQ=255)
                                                                                                                                      tttCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGCCGTAGGcc             <  1:24416/150‑1 (MQ=255)
                                                                                                                                       ttCGCCTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGCCGTAGGCCTg           >  1:441028/1‑151 (MQ=255)
                                                                                                                                           ccTGATTGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGCCGTAGGCCTGAGc        >  2:85628/1‑150 (MQ=255)
                                                                                                                                               gttGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCAGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCCCCGTAGGCCTGAGCaa      >  2:175503/2‑148 (MQ=255)
                                                                                                                                                ttGCCATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGCCGTAGGCCTGAGCAAAAgg  >  2:620202/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
GATAGCCAGTATCTTTCAGTTTAAATACGCCACCCCAGGCCAGGTTTTGCACGGGAGCAACAAAAAATGTCGCCACACTGAATACCAGACACAGGCTGTCGAAGGTATTCCAGCGCGCTTTTTCATTCTCTTTTTTTCGCCTGATTGCTATTACGCCGAGCGCAAAAATAAATAAGCCGACCAGGTAGCTGTACCACGGAAAAATCGTCAGGATTTCGGTCGACTCTTCCATATTGGTGGAGTGCAATGCCAGCAATGTATTGAAATTAGGCGCGCCGTAGGCCTGAGCAAAAGG  >  NC_000913/852075‑852369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A