Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I2 R1 139 64.5 2139856 92.7% 1983646 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 904,172 A→G L99S (TTG→TCG)  ybjP ← lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913904,1720AG100.0% 232.4 / NA 61L99S (TTG→TCG) ybjPlipoprotein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (34/27);  total (34/27)

CGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCAAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTGCAAAATGCGGTAGT  >  NC_000913/904026‑904319
                                                                                                                                                  |                                                                                                                                                   
cgATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAggt                                                                                                                                                 <  2:968383/151‑1 (MQ=255)
 gATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAggtg                                                                                                                                                <  1:952532/151‑1 (MQ=255)
    gACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAggtggt                                                                                                                                              <  1:721362/150‑1 (MQ=255)
    gACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAggtggt                                                                                                                                              <  2:782149/150‑1 (MQ=255)
      cccAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCg                                                                                                                                           >  2:798957/1‑151 (MQ=255)
            acTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGCTCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTgg                                                                                                                                      >  1:873846/1‑150 (MQ=255)
             cTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGCTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATATTCGATGCACTGGCAACGTGGGCGCTCTCTGGCGAGGTGGTTCGACTgg                                                                                                                                      >  2:230866/1‑149 (MQ=255)
                  cTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATgg                                                                                                                               >  1:451463/1‑151 (MQ=255)
                  cTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATgg                                                                                                                               >  2:581993/1‑151 (MQ=255)
                  cTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACAGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATgg                                                                                                                               >  2:120409/1‑151 (MQ=255)
                     ccTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGAt                                                                                                                             <  1:688400/150‑1 (MQ=255)
                       tGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGt                                                                                                                          >  2:53105/1‑151 (MQ=255)
                        gAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGt                                                                                                                          <  2:425732/150‑1 (MQ=255)
                        gAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGt                                                                                                                          >  2:501185/1‑150 (MQ=255)
                         aaTCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTg                                                                                                                        >  1:174817/1‑151 (MQ=255)
                           tCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGt                                                                                                                      >  1:574074/1‑151 (MQ=255)
                            cATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTc                                                                                                                     <  2:798184/151‑1 (MQ=255)
                             aTTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCa                                                                                                                    <  2:709089/151‑1 (MQ=255)
                                 acacTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCagtag                                                                                                                <  1:104151/151‑1 (MQ=255)
                                  cacTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCagtagt                                                                                                               >  1:7029/1‑151 (MQ=255)
                                   acTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGtt                                                                                                              <  1:73834/151‑1 (MQ=255)
                                   acTTCATCATGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGtt                                                                                                              >  2:172594/1‑151 (MQ=255)
                                     ttCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTcc                                                                                                            >  1:351203/1‑151 (MQ=255)
                                             gCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGtt                                                                                                    >  2:721507/1‑151 (MQ=255)
                                              ccAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGtt                                                                                                    >  2:876966/1‑150 (MQ=255)
                                                          aCCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCggg                                                                                         >  1:465713/1‑149 (MQ=255)
                                                              tGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCAt                                                                                   >  1:65164/1‑151 (MQ=255)
                                                                   gagaTCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCt                                                                               <  2:446765/150‑1 (MQ=255)
                                                                   gagaTCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCt                                                                               >  1:987293/1‑150 (MQ=255)
                                                                   gagaTCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCt                                                                               >  1:799678/1‑150 (MQ=255)
                                                                        ccACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGc                                                                           >  2:398691/1‑149 (MQ=255)
                                                                        ccACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCa                                                                          <  2:207708/150‑1 (MQ=255)
                                                                        ccACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCa                                                                          <  2:267458/150‑1 (MQ=255)
                                                                                aaTGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCa                                                                 <  2:835622/151‑1 (MQ=255)
                                                                                     aaTGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTg                                                            <  2:92919/151‑1 (MQ=255)
                                                                                      aTGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGt                                                           >  1:924800/1‑151 (MQ=255)
                                                                                      aTGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGt                                                           <  2:978384/151‑1 (MQ=255)
                                                                                          tACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCa                                                                          <  1:68035/132‑1 (MQ=255)
                                                                                          tACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCa                                                                          >  2:68034/1‑132 (MQ=255)
                                                                                            cGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCa                                                     <  2:78134/151‑1 (MQ=255)
                                                                                                   cACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAgg                                              >  1:78693/1‑151 (MQ=255)
                                                                                                      gATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGgcg                                           >  1:831702/1‑151 (MQ=255)
                                                                                                      gATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGgcg                                           >  1:590/1‑151 (MQ=255)
                                                                                                       aTTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGgcgc                                          >  2:340748/1‑151 (MQ=255)
                                                                                                       aTTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGgcgc                                          >  1:645006/1‑151 (MQ=255)
                                                                                                         tAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCa                                         <  1:818747/150‑1 (MQ=255)
                                                                                                         tAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGGGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATT‑TCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCa                                         >  1:711123/1‑149 (MQ=255)
                                                                                                              aTAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCgg                                   >  1:8654/1‑151 (MQ=255)
                                                                                                                aGTCGATGCACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATCAGGGCGCAAGGCGGTg                                 >  2:882813/1‑151 (MQ=255)
                                                                                                                        cACTGGCAACGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGtt                         <  1:576955/151‑1 (MQ=255)
                                                                                                                               aaCGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCgg                  >  1:81807/1‑151 (MQ=255)
                                                                                                                               aaCGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCgg                  >  1:507125/1‑151 (MQ=255)
                                                                                                                                 cGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTg                <  1:481075/151‑1 (MQ=255)
                                                                                                                                 cGTGGGCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTg                >  2:1025842/1‑151 (MQ=255)
                                                                                                                                     ggCGCTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTGCaaa            <  2:1035776/151‑1 (MQ=255)
                                                                                                                                      gcgcTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTGCaaaa           <  1:721545/151‑1 (MQ=255)
                                                                                                                                        gcTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTGCAAAATg         <  1:1007914/151‑1 (MQ=255)
                                                                                                                                        gcTATCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTGCAAAATg         <  2:81806/151‑1 (MQ=255)
                                                                                                                                           aTCTGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTGCAAAATGc        <  2:298109/149‑1 (MQ=255)
                                                                                                                                              tGGCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTGCAAAATGCgg      >  2:527126/1‑148 (MQ=255)
                                                                                                                                               ggCGAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTGCAAAATGCGGTAGt  <  1:781760/151‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
CGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCATCACGATTAGGGATAGTCGATGCACTGGCAACGTGGGCGCTATCTGGCAAGGTGGTTCGACTGGAGAATGGATCGTTGGTCAGTAGTTCCCGATGGTTATTATCCCGGGAGGCATCGCTAAGCAGTGTCGCCAGTTTGTCGCTCAGATAAGGGCGCAAGGCGGTGATGTCGTTGCTGCGGTGCAAAATGCGGTAGT  >  NC_000913/904026‑904319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A