Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F50 I2 R1	139	64.5	2139856	92.7%	1983646	149.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,273,196	C→T	F230F (TTC→TTT)	chaC →	cation transport regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,273,196	0	C	T	100.0%	253.7 / NA	67	F230F (TTC→TTT)	chaC	cation transport regulator
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (36/31); total (36/31)

CTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAGGAAGTGTACTAAT  >  NC_000913/1273050‑1273341

cTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAACGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCt                                                                                                                                               >  1:961301/1‑151 (MQ=255)

         aaCGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACt                                                                                                                                      <  1:424307/151‑1 (MQ=255)

         aaCGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACt                                                                                                                                      >  1:340534/1‑151 (MQ=255)

           cGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTc                                                                                                                                    >  1:919823/1‑151 (MQ=255)

               caATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGc                                                                                                                                >  2:58939/1‑151 (MQ=255)

                 aTACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCAt                                                                                                                              >  1:717363/1‑151 (MQ=255)

                  tACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCAt                                                                                                                              >  1:1069149/1‑150 (MQ=255)

                         tttCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTgggg                                                                                                                       <  2:951242/150‑1 (MQ=255)

                         tttCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGc                                                                                                                      >  2:532582/1‑151 (MQ=255)

                            cACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGt                                                                                                                    <  2:622394/150‑1 (MQ=255)

                             aCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCa                                                                                                                  <  1:842633/151‑1 (MQ=255)

                             aCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGAGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCAGCATAGTGGGGCGTc                                                                                                                   >  2:735831/1‑150 (MQ=255)

                                ggAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGAc                                                                                                               >  1:1063930/1‑151 (MQ=255)

                                ggAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGGGTGTTACGTCCGGGATTTGCCTGCGTAAACTTCCCGCATAATGGGGCGt                                                                                                                    >  2:203838/1‑146 (MQ=255)

                                 gAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACg                                                                                                              >  1:988626/1‑151 (MQ=255)

                                 gAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGACCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAg                                                                                                                 <  2:389167/148‑1 (MQ=255)

                                       gAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCt                                                                                                        <  1:38587/151‑1 (MQ=255)

                                        aGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTc                                                                                                       <  1:981836/151‑1 (MQ=255)

                                           ttATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCaa                                                                                                     >  2:1054324/1‑150 (MQ=255)

                                               cAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACAt                                                                                                 <  1:383777/150‑1 (MQ=255)

                                                aaaCTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACAtt                                                                                                >  2:1036723/1‑150 (MQ=255)

                                                aaaCTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACAtt                                                                                                >  2:637316/1‑150 (MQ=255)

                                                aaaCTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTa                                                                                               <  2:480019/151‑1 (MQ=255)

                                                 aaCTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACAtt                                                                                                <  2:874698/149‑1 (MQ=255)

                                                     gggAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAAt                                                                                           <  1:392396/150‑1 (MQ=255)

                                                       gAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAAtgtg                                                                                        >  1:581159/1‑151 (MQ=255)

                                                        aaTGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAAtgtg                                                                                        >  2:244734/1‑150 (MQ=255)

                                                           gCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCCGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGc                                                                                     <  1:901401/150‑1 (MQ=255)

                                                              ggACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACtt                                                                                 >  1:1020545/1‑151 (MQ=255)

                                                              ggACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACtt                                                                                 <  2:1488/151‑1 (MQ=255)

                                                                 cGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTAt                                                                              >  2:313004/1‑151 (MQ=255)

                                                                   aTGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGCGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGACAGACCCCCCCTCAAACATTAACATGTGAGCACTTTATc                                                                             >  2:932529/1‑150 (MQ=255)

                                                                    tGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCgg                                                                           >  1:446560/1‑151 (MQ=255)

                                                                         tGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGAc                                                                      >  1:471814/1‑151 (MQ=255)

                                                                          gAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACa                                                                     <  2:182720/151‑1 (MQ=255)

                                                                           aaTGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAg                                                                    <  2:13029/151‑1 (MQ=255)

                                                                              gATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGt                                                                 <  2:705959/151‑1 (MQ=255)

                                                                               aTTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTc                                                                <  1:79482/151‑1 (MQ=255)

                                                                                 ttGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTcc                                                               >  2:407624/1‑150 (MQ=255)

                                                                                 ttGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTcc                                                               <  1:637350/150‑1 (MQ=255)

                                                                                     tGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTgc                                                          >  1:1032249/1‑151 (MQ=255)

                                                                                     tGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTg                                                           >  1:390670/1‑150 (MQ=255)

                                                                                      ggTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTgc                                                          <  2:701083/150‑1 (MQ=255)

                                                                                         aTCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCa                                                      <  2:656968/151‑1 (MQ=255)

                                                                                           cGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGGGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTCTCGGCTGACAGCGTCCATTgcgcta                                                      <  2:887924/149‑3 (MQ=255)

                                                                                            ggTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGtt                                                   <  1:159860/151‑1 (MQ=255)

                                                                                               aaaaaaaCTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTcc                                                 >  1:1029991/1‑150 (MQ=255)

                                                                                                           ggCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGa                                    <  1:1058071/151‑1 (MQ=255)

                                                                                                           ggCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGa                                    <  1:818029/151‑1 (MQ=255)

                                                                                                              ggAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAGCATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGAttt                                 >  1:747069/1‑151 (MQ=255)

                                                                                                                agaATTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTcc                               <  1:203861/151‑1 (MQ=255)

                                                                                                                 gaATTTTCCGAATGGTGTGTTACGTACGTGATTTGCCTGAGCAACCATCCCGCATACCGGGGCGTCAGACGCCCCCTCAAACATGAAAATGTGAGCACTTTATCGGCTGCCAGCGCCCACTGCGCCAGTACCACAAGAGTActg                                     >  2:577637/1‑142 (MQ=255)

                                                                                                                  aaTTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCAc                             >  2:337604/1‑151 (MQ=255)

                                                                                                                  aaTTTTCCGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCAc                             >  2:166261/1‑151 (MQ=255)

                                                                                                                         cGGATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatc                       >  2:822771/1‑150 (MQ=255)

                                                                                                                           ggtGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGTGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatcaat                    <  2:947246/149‑1 (MQ=255)

                                                                                                                           gATGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatcaat                    >  1:759351/1‑151 (MQ=255)

                                                                                                                            aTGGTGTGTTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatcaatc                   >  2:194983/1‑151 (MQ=255)

                                                                                                                               gtgtgtTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatcaatc                   >  1:819982/1‑148 (MQ=255)

                                                                                                                                  tgtTACGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAgg              >  1:606959/1‑150 (MQ=255)

                                                                                                                                      aCGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAGGAAgtg         <  1:402756/151‑1 (MQ=255)

                                                                                                                                      aCGTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAGGAAgt          <  1:678438/150‑1 (MQ=255)

                                                                                                                                        gTCCGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAGGAAgtgt        >  1:990267/1‑150 (MQ=255)

                                                                                                                                          ccGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAGGAAGTGTACt     <  1:892286/151‑1 (MQ=255)

                                                                                                                                           cGGGATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAGGAAGTGTACTa    <  1:337629/151‑1 (MQ=255)

                                                                                                                                            gggATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAGGAAGTGTACTa    >  1:784284/1‑150 (MQ=255)

                                                                                                                                             ggATTTGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAGGAAGTGTACTAAt  <  1:763937/151‑1 (MQ=255)

CTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAGAGGAAGTGTACTAAT  >  NC_000913/1273050‑1273341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A