Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I2 R1 139 64.5 2139856 92.7% 1983646 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,565,229 A→G K236R (AAA→AGA)  yffS → CPZ‑55 prophage; uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,565,2290AG100.0% 293.2 / NA 74K236R (AAA→AGA) yffSCPZ‑55 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (35/39);  total (35/39)

GAATACCTGGGCAACAACGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCT  >  NC_000913/2565081‑2565376
                                                                                                                                                    |                                                                                                                                                   
gAATACCTGGGCAACAACGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGac                                                                                                                                                   >  1:758840/1‑151 (MQ=255)
    aCCTGGGCAACAACGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGAcaca                                                                                                                                                >  2:885809/1‑150 (MQ=255)
    aCCTGGGCAACAACGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACaa                                                                                                                                               <  1:691918/151‑1 (MQ=255)
      cTGGGCAACAACGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGAcaca                                                                                                                                                >  2:482619/1‑148 (MQ=255)
        gggCAACAACGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACaagaa                                                                                                                                            <  2:383624/150‑1 (MQ=255)
          gCAACAACGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACaagaaaga                                                                                                                                         <  2:951109/151‑1 (MQ=255)
          gCAACAACGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGGTGTAGCGACTGATTGAGCAGGCCCAAAGGAGAGGATTGATTAGCGTTGTATAGGAAATCAGACACaaga                                                                                                                                             >  2:639694/1‑147 (MQ=255)
              caacGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGaa                                                                                                                                     <  1:234001/151‑1 (MQ=255)
              caacGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGa                                                                                                                                      >  2:222995/1‑150 (MQ=255)
               aacGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGaaa                                                                                                                                    <  2:820728/151‑1 (MQ=255)
                  gCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAAc                                                                                                                                  >  2:1029966/1‑150 (MQ=255)
                    aGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGc                                                                                                                               >  1:1035901/1‑151 (MQ=255)
                     gggTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCa                                                                                                                              <  1:614683/151‑1 (MQ=255)
                        ttACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAAcc                                                                                                                           >  2:1016959/1‑151 (MQ=255)
                          aCAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAg                                                                                                                         <  1:408525/151‑1 (MQ=255)
                              cagAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCg                                                                                                                     <  2:90077/151‑1 (MQ=255)
                               agaagaTCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCgg                                                                                                                    <  1:809737/151‑1 (MQ=255)
                                gaagaTCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGc                                                                                                                   <  1:731659/151‑1 (MQ=255)
                                   gaTCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCaaa                                                                                                                <  2:799622/151‑1 (MQ=255)
                                    aTCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCaa                                                                                                                 >  1:143139/1‑149 (MQ=255)
                                      cACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAgg                                                                                                              <  1:836254/150‑1 (MQ=255)
                                       aCTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGc                                                                                                             >  1:953440/1‑150 (MQ=255)
                                         tgtgTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCa                                                                                                            >  2:974923/1‑149 (MQ=255)
                                                 aTAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGCTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGAATGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGTCAACCAGTTCGGCaaaagaaaaacagtt                                                                                                    >  2:614104/1‑137 (MQ=255)
                                                  tAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGAc                                                                                                 >  1:890511/1‑151 (MQ=255)
                                                    acgacgGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGAc                                                                                                 >  2:484799/1‑149 (MQ=255)
                                                       acgGCAACCGGAAGCCAATCAGTAACGGCGCTTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAATGCAAGAAAGGTGACAAg                                                                                              <  1:602607/149‑1 (MQ=255)
                                                           cAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATa                                                                                        <  2:901572/151‑1 (MQ=255)
                                                            aaCCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATaa                                                                                       <  1:456322/151‑1 (MQ=255)
                                                            aaCCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATa                                                                                        >  1:665922/1‑150 (MQ=255)
                                                             aCCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAAc                                                                                      <  1:879488/151‑1 (MQ=255)
                                                                  aaGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGc                                                                                 <  2:617521/151‑1 (MQ=255)
                                                                    gCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCtt                                                                               <  2:1067368/151‑1 (MQ=255)
                                                                    gCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCtt                                                                               <  1:76554/151‑1 (MQ=255)
                                                                      cAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAg                                                                                                               >  1:262780/1‑117 (MQ=255)
                                                                       aaTCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTccc                                                                            >  1:828051/1‑151 (MQ=255)
                                                                           aGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAAc                                                                         >  2:512280/1‑150 (MQ=255)
                                                                                cGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGAtt                                                                   <  2:802321/151‑1 (MQ=255)
                                                                                     cgTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATa                                                               >  1:96878/1‑150 (MQ=255)
                                                                                     cgTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATa                                                               >  2:320345/1‑150 (MQ=255)
                                                                                      gTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATa                                                               >  1:41527/1‑149 (MQ=255)
                                                                                             cGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTggg                                                        >  2:193552/1‑149 (MQ=255)
                                                                                             cGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGga                                                       <  1:868670/150‑1 (MQ=255)
                                                                                             cGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGga                                                       <  2:911085/150‑1 (MQ=255)
                                                                                             cGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGga                                                       <  1:1041659/150‑1 (MQ=255)
                                                                                              gACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTggg                                                        >  2:231661/1‑148 (MQ=255)
                                                                                              gACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGgaga                                                     <  1:612866/151‑1 (MQ=255)
                                                                                               aCTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGAc                                                    <  1:193555/151‑1 (MQ=255)
                                                                                                  gATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGa                                                  <  1:397780/150‑1 (MQ=255)
                                                                                                    ttGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAAt                                                >  2:121453/1‑150 (MQ=255)
                                                                                                     tGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGAc                                                    <  2:332358/145‑1 (MQ=255)
                                                                                                     tGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGAc                                                    >  1:332383/1‑145 (MQ=255)
                                                                                                      gAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATaa                                              <  1:582675/150‑1 (MQ=255)
                                                                                                       aGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAAc                                            >  2:188653/1‑151 (MQ=255)
                                                                                                         cAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCa                                          <  2:473742/151‑1 (MQ=255)
                                                                                                         cAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCa                                          <  2:649401/151‑1 (MQ=255)
                                                                                                          aGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAg                                         <  1:539181/151‑1 (MQ=255)
                                                                                                           ggCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGc                                        <  1:738513/151‑1 (MQ=255)
                                                                                                            gCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGcc                                       <  1:977055/151‑1 (MQ=255)
                                                                                                                aaGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTc                                    >  1:656450/1‑150 (MQ=255)
                                                                                                                    gagaGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAAccc                               <  1:867174/151‑1 (MQ=255)
                                                                                                                    gagaGGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAAccc                               <  1:144105/151‑1 (MQ=255)
                                                                                                                     agagGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAAcccc                              <  2:686859/151‑1 (MQ=255)
                                                                                                                     agagGATTGATTAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAAcccc                              >  2:25641/1‑151 (MQ=255)
                                                                                                                            tgattAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGAATGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCtcat                       >  2:389444/1‑151 (MQ=255)
                                                                                                                              attAGCGTTTAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCtcatc                      >  2:352022/1‑150 (MQ=255)
                                                                                                                               ttAGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCtcatca                     >  1:213029/1‑150 (MQ=255)
                                                                                                                                 aGCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCatcaatc                  >  1:881101/1‑151 (MQ=255)
                                                                                                                                  gCGTTGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCatcaatca                 <  2:885808/151‑1 (MQ=255)
                                                                                                                                      tGAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGc             >  1:1060410/1‑151 (MQ=255)
                                                                                                                                       gAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGcc            <  1:842963/151‑1 (MQ=255)
                                                                                                                                       gAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGcc            >  1:342264/1‑151 (MQ=255)
                                                                                                                                       gAACAGGAAATCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGc             <  2:181400/150‑1 (MQ=255)
                                                                                                                                                 tCAGACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCt  >  1:558230/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GAATACCTGGGCAACAACGCAGGGTTACAGCAGAAGATCACTGTGTTGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCT  >  NC_000913/2565081‑2565376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A