Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 562,327 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583562,3270AT98.3% 557.0 / NA 241intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (104/131);  minor base G (4/0);  total (110/131)
Fisher's exact test for biased strand distribution p-value = 4.04e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583562,3280CG99.2% 555.3 / NA 241intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (108/130);  minor base T (1/1);  total (110/131)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583562,3290TA98.7% 543.2 / NA 241intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/2);  new base A (106/129);  total (110/131)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 241 total aligned reads displayed.

GACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCGCTCAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑GCTGCTCATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATGCTCTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCACTTTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGGCTGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCGCTCTCCGGCCAGATAATCAAGCTACTTTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCAGCGTATTAAGAAGCTGGCCTTCGTCCC  >  CP042583/562050‑562604
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                   
   cAAAAGATGTCCCAAACCACGCGTCGTTGGAGATAGCAAGCCGGTAGTCGGTAGCCGGGCGGAAGTTAGCGCACACTTGCTCGCCGAGAATGATCTGGTAGCAAATAGCCGCAGTACGCGCAATACCAGTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTa                                                                                                                                                                                                                                                                         <  2:1741787/289‑1 (MQ=255)
     aTAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGGCGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACg                                                                                                                                                                                                                                                                       >  1:1919738/1‑289 (MQ=255)
     aTAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGGACg                                                                                                                                                                                                                                                                       >  1:1495753/1‑289 (MQ=255)
         aTTTACCAGACCACGCATAGTTGGAGATAGGCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    <  2:1666292/288‑1 (MQ=255)
          tttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGGAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    <  1:301951/287‑1 (MQ=255)
          tttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    <  2:894088/287‑1 (MQ=255)
          tttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    <  2:1087350/287‑1 (MQ=255)
          tgtACCAAACCACGCATCGTTGGCGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    <  1:2213483/285‑1 (MQ=255)
           ttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    <  1:695091/286‑1 (MQ=255)
           ttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    >  2:695091/1‑286 (MQ=255)
             aCCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCAc                                                                                                                                                                                                                                                                 <  2:1604056/287‑1 (MQ=255)
                 aaCCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTAc                                                                                                                                                                                                                                                           <  2:1834427/289‑1 (MQ=255)
                  aCCACGCATCGTGGGAGATAGTCAGCAGTTAGTCGGTAGCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTAcc                                                                                                                                                                                                                                                          <  2:2041173/289‑1 (MQ=255)
                   ccACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTAcc                                                                                                                                                                                                                                                          >  2:1276740/1‑288 (MQ=255)
                      cGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGc                                                                                                                                                                                                                                                      >  1:1876721/1‑289 (MQ=255)
                               ggcgaTAGTCAGCAGATAGTCGGGAGCCGGGCGGAAGTGAGCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCGAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                                                                                                                                                             <  2:379274/286‑1 (MQ=255)
                               ggAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                                                                                                                                                             <  1:773584/289‑1 (MQ=255)
                               ggAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                                                                                                                                                             <  2:360587/289‑1 (MQ=255)
                                gagaTAGTCAGCCGTAAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                                                                                                                                                             <  2:736118/288‑1 (MQ=255)
                                gagaTAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                                                                                                                                                             <  2:164753/288‑1 (MQ=255)
                                gagaTAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                                                                                                                                                             <  2:1876721/288‑1 (MQ=255)
                                     aGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCAAGCGGGACAAACTCGCCAAACGGCACCCGATGGATTGTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCCCACCGTTACCCAGCgcgttgcggggcttg                                                                                                                                                                                                                                       >  2:1964961/1‑275 (MQ=255)
                                      gTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGCTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGtgttgt                                                                                                                                                                                                                                      >  1:1437878/1‑289 (MQ=255)
                                       tCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTa                                                                                                                                                                                                                                     >  1:1266978/1‑289 (MQ=255)
                                       tCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTGGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGGGTTGTa                                                                                                                                                                                                                                     >  2:64511/1‑289 (MQ=255)
                                                 gTCGGTATCCGTGCGGAAGCTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCCTTTGCCGACAGCGGCCGCCGGATATATGGCCCACGGCTGAACGACGC‑CAGCGGCAGATCGAAGACCGGCTCTAACGGACGCAAAAGCGACTCCAGCGGGACAAACCCGCCAAACGGCACCTGATGGCTTTTGTTGTCTCGATTCGTCGATTT‑GTTGCTTGACGGCGGCTCATTTCCCAGCGGGATGGTGTTGTTGAAAGTATcttc                                                                                                                                                                                                                            >  2:1771644/1‑285 (MQ=255)
                                                 gTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGGTGATTAGTAACTTTACGGCGCACCTTTAACAAGCGTGATGATGGTGTGTTAGGTATCGTAg                                                                                                                                                                                                                           >  2:577688/1‑289 (MQ=255)
                                                 gTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTa                                                                                                                                                                                                                            >  1:570109/1‑288 (MQ=255)
                                                   cGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAg                                                                                                                                                                                                                           <  1:1397045/287‑1 (MQ=255)
                                                     gTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTATTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    >  1:37105/1‑244 (MQ=255)
                                                      tATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGt                                                                                                                                                                                                                       <  1:503976/288‑1 (MQ=255)
                                                       aTCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGtt                                                                                                                                                                                                                      <  1:1662597/288‑1 (MQ=255)
                                                        tCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGCTGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGTTGGGGTTGTAGGAATCGTGGCGGtccg                                                                                                                                                                                                                    >  2:2089684/1‑286 (MQ=255)
                                                        tCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACCCGCCAAACGGCACCAGATGGGTCTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGAGTGGGTTGTAGGTATCGTAGCGGt                                                                                                                                                                                                                       >  2:2159773/1‑286 (MQ=255)
                                                          cGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGc                                                                                                                                                                                                                  <  1:2121319/289‑1 (MQ=255)
                                                            ggCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    <  2:2224082/237‑1 (MQ=255)
                                                            ggCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGgcg                                                                                                                                                                                                                                                                    >  1:2224082/1‑237 (MQ=255)
                                                            ggCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGAACCAGATGGTTTTTGTTATAGCGA‑TAGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGGGTTGTAGGTATCGTAGCGGTTCTGCtt                                                                                                                                                                                                                >  1:1614411/1‑289 (MQ=255)
                                                                     tATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGAc                                                                                                                                                                                                        <  2:325600/288‑1 (MQ=255)
                                                                      aTCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCGGATGGGTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGAGGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGAcgc                                                                                                                                                                                                      >  1:1156185/1‑289 (MQ=255)
                                                                       tCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGAc                                                                                                                                                                                                        >  1:2044707/1‑286 (MQ=255)
                                                                           gcACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAGGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTAATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTc                                                                                                                                                                                                 <  2:281419/289‑1 (MQ=255)
                                                                           gcACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGGTGGTCTTGTATGTATGGTAGCGGTTCTGCTTATTGAGAcgcgcggc                                                                                                                                                                                                 >  2:2050584/1‑287 (MQ=255)
                                                                             cctgactcccagagaTTGATTCCGTAGAAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATTTATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGa                                                                                                                                                                                               <  2:50333/278‑1 (MQ=255)
                                                                                                tctcGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTgatgat                                                                                                                                                                                                                                              <  2:1267113/223‑1 (MQ=255)
                                                                                                 tccGTGGCAAATAGCCGAAGAAAGCTCAATACCATTTGCCGGCGGCGGCGGCTGGATATATGGCCAACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGGGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAgcgag                                                                                                                                                                           <  2:1495753/287‑5 (MQ=255)
                                                                                                 ctcGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGtt                                                                                                                                                                                                                      <  1:1308416/246‑1 (MQ=255)
                                                                                                 ctcGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGtt                                                                                                                                                                                                                      >  2:1308416/1‑246 (MQ=255)
                                                                                                     tAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAgcgagct                                                                                                                                                                         >  2:768363/1‑281 (MQ=255)
                                                                                                      aGCCAATGGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATAAAAGAACGGTGCTAACGGACGCAGAATCGACGCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAgcgagctac                                                                                                                                                                       <  1:559477/288‑9 (MQ=255)
                                                                                                        cAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCtt                                                                                                                                                                    >  1:160274/1‑289 (MQ=255)
                                                                                                          aaTAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGAGTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTa                                                                                                                                                                  >  1:1002070/1‑289 (MQ=255)
                                                                                                           aTAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGtgttgt                                                                                                                                                                                                                                      <  1:458842/220‑1 (MQ=255)
                                                                                                           aTAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGtgttgt                                                                                                                                                                                                                                      >  2:458842/1‑220 (MQ=255)
                                                                                                              gCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                                                                                                                                                             >  1:1588950/1‑210 (MQ=255)
                                                                                                               ccGAAGAAAGCTCAATACCATTGGCCGAACGAGGCGGCGGGATATACGGGCCACGGCTGAA‑CGACAACATCGGCAGATCAAAGAACAGGGCCAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACg                                                                                                                                                             <  2:1044119/289‑1 (MQ=255)
                                                                                                                cGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACg                                                                                                                                                             <  2:546351/288‑1 (MQ=255)
                                                                                                                cGCAGTAAGCTCAATACCAGTTGCGGACAGCGGCGGCTGGATATATGGCGCACGGTTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTGTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACGCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACg                                                                                                                                                             <  1:925146/288‑1 (MQ=255)
                                                                                                                 gaaGTAAGCGCAATACCATTTGCGGACCGCGGCGGCTGGATAGATGGCCAACGGCTGAA‑CGACGACATCGGAAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCa                                                                                                                                                           <  2:71012/287‑1 (MQ=255)
                                                                                                                 gCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCa                                                                                                                                                           <  2:120341/289‑1 (MQ=255)
                                                                                                                  cAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGgtg                                                                                                                                                                                                                                          <  1:1474316/209‑1 (MQ=255)
                                                                                                                           cactACCATGTGCCGACAGCGGCGGCTGGCTATATGCGCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACGCCAGCGGAACAAACCCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCATCTTTACCCAGCGTGATGATGTTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCTCCGTc                                                                                                                                                 <  2:160147/286‑1 (MQ=255)
                                                                                                                           cAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTc                                                                                                                                                 <  1:1946478/289‑1 (MQ=255)
                                                                                                                                   tttgccgacAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATTGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCGTTACCCAGCGTGATGATGGTGTTGGAGGTATCGTAGCGGTTCTGCTTATTGAAACGCGCGTCGACAAACCCGGTTACCCGCCAGCTTCTTTTCTGACGAAACTCACCCTTCAGttcct                                                                                                                                         >  2:1322864/9‑285 (MQ=255)
                                                                                                                                         gacAGCGGCGGCTGGATATATGGCCCACAGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGTCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGa                                                                                                                                   <  1:418851/287‑1 (MQ=255)
                                                                                                                                                             tGGCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTcc                                                                                                               >  1:95200/1‑289 (MQ=255)
                                                                                                                                                              ggCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTCCCTTTATCACGCAACCCACCCTCCAGTGATTTGCGGAACGGTTGCTGATTAATTTccc                                                                                                              >  2:117473/1‑288 (MQ=255)
                                                                                                                                                              ggCCCACGGCTGAA‑CGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                                                                                              >  1:261692/1‑289 (MQ=255)
                                                                                                                                                                     cggctgaacgacgacATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCgg                                                                                                        <  1:1072846/275‑1 (MQ=255)
                                                                                                                                                                     cggctgaacgacgacATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCGTATTTAGACGCGCGTCGACAATCCGGGTTACCAGCGAGCTACTTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGa                                                                                                            >  1:718238/15‑285 (MQ=255)
                                                                                                                                                                        ctgaacgacgacATCGGCAGATCAAAGAACGGTGCTAACGGGCGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                                                                                                      <  2:1919738/277‑1 (MQ=255)
                                                                                                                                                                           aacgacgacATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATc                                                                                                   >  1:2149410/9‑288 (MQ=255)
                                                                                                                                                                            acgacgaaaTCGGCATATCAAAGTACGATGCTAACGGACGCATAATCGATGCCAGCGGGACAAACACGCCAGACGGCACCAGCTGGTTTTTGTTATAGCGA‑TCGGCTTATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGGGGTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGGCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATcgc                                                                                                 <  2:1614411/281‑1 (MQ=255)
                                                                                                                                                                                cgacATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCACCGGGACAAACTCGCCAAACGGCACCAGCTGGTTTTTGGTATAGCGA‑TCGCCTGCTTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTTCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTCTTTTGAAGAACGATTGCTGATTAATTTCCAGCTAGGtttacgtcg                                                                                               >  2:1477799/4‑280 (MQ=255)
                                                                                                                                                                                      cGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAgcga                                                                                                                                                                            >  1:1805377/1‑201 (MQ=255)
                                                                                                                                                                                      cGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAgcga                                                                                                                                                                            <  2:1805377/204‑4 (MQ=255)
                                                                                                                                                                                                      ggTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCtt                                                                                                                                                                    >  2:1404116/1‑196 (MQ=255)
                                                                                                                                                                                                      ggTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATatacaacgatg                                                                       >  1:964931/1‑279 (MQ=255)
                                                                                                                                                                                                      ggTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCaacgatg                                                                       >  2:157222/1‑284 (MQ=255)
                                                                                                                                                                                                       gTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCaacgatg                                                                       <  2:95200/288‑6 (MQ=255)
                                                                                                                                                                                                        tGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGt                                                                                                                                                                                                                       >  2:1466439/1‑143 (MQ=255)
                                                                                                                                                                                                        tGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCaacgatgat                                                                     >  1:1031104/1‑282 (MQ=255)
                                                                                                                                                                                                        tGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCaacgatgat                                                                     >  1:390108/1‑282 (MQ=255)
                                                                                                                                                                                                        tGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCGTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCa                                                                                                                                                      >  1:1737174/1‑208 (MQ=255)
                                                                                                                                                                                                        tGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCCTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTa                                                                                                                                                                  >  1:1793450/1‑196 (MQ=255)
                                                                                                                                                                                                         gCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCaacgatgat                                                                     <  1:354545/288‑8 (MQ=255)
                                                                                                                                                                                                             aCGGACGCAGAAACGATTACACCGGGACAAACTGGCCAAACGGAACCAGATGGTTTTTGTTATAGCGA‑TCTGCTGATTCGTAGCTGTACAGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGTTATCGTAGCGGTTCTGCTTATTGAGACGCGCGGCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCaacgatgatttgcc                                                                <  2:1736423/289‑13 (MQ=255)
                                                                                                                                                                                                                  cGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCTACTCCGGCCCGATAATCAACCAAGATTGGCCCATc                                                            >  2:2241794/1‑288 (MQ=255)
                                                                                                                                                                                                                         tcgactcCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGc                                                    <  2:1372053/285‑1 (MQ=255)
                                                                                                                                                                                                                             ctcCAGCGGGACAAACACGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCcgtt                                                <  1:2025288/289‑1 (MQ=255)
                                                                                                                                                                                                                                                ccAACCGGCACCAGATGTTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCa                             <  1:233874/289‑1 (MQ=255)
                                                                                                                                                                                                                                                ccAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCa                             <  2:200484/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 cAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCa                             <  2:261692/288‑1 (MQ=255)
                                                                                                                                                                                                                                                 cAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCAg                            <  1:88087/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         aCCAGATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCAGCGTATTaa                    >  2:1633560/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             gATGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCAGCGTATTaagaa                 >  1:1521602/1‑288 (MQ=255)
                                                                                                                                                                                                                                                               tgttttttGTGTTCGCGA‑TCGGTTGATTCGTAGCTGTCCGGCGCACCTTTACCCAGCGTGATGATGGTGTTTTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCAGCGTATTAAGAAGCt              <  2:935305/286‑1 (MQ=255)
                                                                                                                                                                                                                                                               tGGTTTTTGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCAGCGTATTAAGAAGc               <  1:1322864/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                  tttttGTTATAGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCa                             <  2:2200130/271‑1 (MQ=255)
                                                                                                                                                                                                                                                                           taGCGA‑TCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTATCAGCGAGCTACCTTTATCACGCAACTCACAGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAATCAACGATGATTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATATTCAGCGTATTAAGAAGCAGGCCTTTGTacc  >  1:1668100/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                   
GACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCGCTCAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑GCTGCTCATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATGCTCTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGA‑TCGGCACTTTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGGCTGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCGCTCTCCGGCCAGATAATCAAGCTACTTTTGCCCATCAGCGGTGCCGTTGCGTTGTAGTAAATCTTCAGCGTATTAAGAAGCTGGCCTTCGTCCC  >  CP042583/562050‑562604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A