Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 613,351 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583613,3510GC98.9% 654.4 / ‑3.1 277intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (136/138);  minor base T (1/2);  total (137/140)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP042583613,3520CG99.6% 656.6 / NA 277intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (137/139);  total (137/140)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP042583613,3530TA100.0% 667.2 / NA 277intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (137/140);  total (137/140)

Only 100 of 277 total aligned reads displayed.

CGGTGAAAGAACCGCTCCAGCTGCTGCTGACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCACTACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCAGCTCATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGGCTAATGC‑TCAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAAACTCGTGCTAATGC‑TGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGTCCTGCGCATCGCTGTCGTTGTATTTGTGATCCAGATAGT  >  CP042583/613077‑613622
                                                                                                                                                                                                                                                                                  ||||                                                                                                                                                                                                                                                                              
cGGTGAAAGAACCGCTCCAGCTGCTGCTGACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTg                                                                                                                                                                                                                                                                    >  1:1055992/1‑289 (MQ=255)
cGGTGAAAGAACCGCTCCAGCTGCTGCTGACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTg                                                                                                                                                                                                                                                                    >  1:1524017/1‑289 (MQ=255)
cGGTGAAAGAACCGCTCCAGCTGCTGCTGACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTg                                                                                                                                                                                                                                                                    >  1:2014881/1‑289 (MQ=255)
  gTGAAAGAGCGGCTCCGGGCGCGGCTGACGGAACTGTAAGCACGGGCGGCATAGGTACCAGAAATATCCCCCTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTgg                                                                                                                                                                                                                                                                   <  2:353983/288‑1 (MQ=255)
         aacccgcccAGCGTCTGCTGACGGAACTGTAATCCCTGGCGGCATAGGTACCAGAAATATCCCACGCACCCGCTTAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTcgcg                                                                                                                                                                                                                                                           <  2:180432/282‑1 (MQ=255)
            cGCTCCAGCTGCTGCTGACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATc                                                                                                                                                                                                                                                        <  2:947994/289‑1 (MQ=255)
             gCTCCAGCTGCTGCTGACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCt                                                                                                                                                                                                                                                       >  1:1149949/1‑289 (MQ=255)
                      gctgctgACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCg                                                                                                                                                                                                                                              <  1:1000015/289‑1 (MQ=255)
                      gctgctgACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGGCGCGATCTTTATCTTCg                                                                                                                                                                                                                                              >  1:1989296/1‑289 (MQ=255)
                         gctgACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAATTCTGGTTGTCGCGATCTTTATCTTCGTAg                                                                                                                                                                                                                                           >  2:1920263/1‑289 (MQ=255)
                         gctgACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAg                                                                                                                                                                                                                                           >  2:303148/1‑289 (MQ=255)
                          ctgACGGAACTGTAATCTCTGGCGGCATAGATACCAGAAATATCCCACTCCCCCTCTGAACTCAGGTGCTTATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACTTGCCCCAGCTATTACGTTCATCCAGCTTAACGTTCCACGACATGCGGTGTATGGTTCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGA‑GCGAATTCGACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGt                                                                                                                                                                                                                                          <  1:2244747/289‑1 (MQ=255)
                           tgACGGCACTGAAAACACTGGCGGCATAGGTACCAGAAAGATCCCCCGCCCCCGCTGAGCTCAGGTGCTGATAGTTACCGCTCAACTGGGCTTCATTGTCAGCACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACGGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGAGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGt                                                                                                                                                                                                                                          <  2:293052/288‑1 (MQ=255)
                           tgACGGATCTGATATCCCTGGCGGCATAGAGACCAGAAGTATCCTACTCACCCGCTGAACCCAGGTGCTGAAAGTTACCGCTCCCCTGTGCTCCATTGTCCGGACGATCGGAGTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGAAATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGt                                                                                                                                                                                                                                          <  2:470995/288‑1 (MQ=255)
                           tgACGGAACTGTAATCACTGGCGGCATAGGTACCCGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGt                                                                                                                                                                                                                                          <  1:1359646/288‑1 (MQ=255)
                              cGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTggg                                                                                                                                                                                                                                       <  1:220598/288‑1 (MQ=255)
                              cGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTggg                                                                                                                                                                                                                                       <  1:303148/288‑1 (MQ=255)
                                                cggcATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGaatgacgtcga                                                                                                                                                                                                                    >  1:183958/1‑280 (MQ=255)
                                                  gcATAGGTACCAGAAATATCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTATTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGaatgacgtcgaaa                                                                                                                                                                                                                  >  2:274492/1‑278 (MQ=255)
                                                                  tatCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCa                                                                                                                                                                                                 <  1:551462/289‑1 (MQ=255)
                                                                   atCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTCTTGAATGACGTCGAAATCG‑AGATATCTCTCCAg                                                                                                                                                                                                >  1:1118093/1‑289 (MQ=255)
                                                                   atCCCACTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCGTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCat                                                                                                                                                                                                >  2:776756/1‑288 (MQ=255)
                                                                         cTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGccacca                                                                                                                                                                                          >  2:859144/1‑289 (MQ=255)
                                                                         cTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCAcc                                                                                                                                                                                           >  1:837271/1‑288 (MQ=255)
                                                                         cTCACCCGCTGAACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCa                                                                                                                                                                                          >  1:190610/1‑289 (MQ=255)
                                                                              ccgctgaactCAGTTGCTGATAGTGACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCAAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCT‑AGATATCTCTCCAGTCACCAAGATc                                                                                                                                                                                     <  1:1942320/282‑1 (MQ=255)
                                                                              ccgctgaactCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATc                                                                                                                                                                                     <  1:274492/282‑1 (MQ=255)
                                                                              ccgctgaactCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATc                                                                                                                                                                                     <  1:2032100/282‑1 (MQ=255)
                                                                              ccgctgaactCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATc                                                                                                                                                                                     <  2:1149949/282‑1 (MQ=255)
                                                                              cagctgaccgcacgTGCAGATAGTATCCGCTCGCCTGGGATCCATTGTACGGACGATCTGATTGAAGTCCGGCAGACATGCACCAGCTATTACGTTCATCCAGCGTATGGTTCCCCGACATGCGGGGACTGGTGCTGTGGCTACTGTTTTGCATGTCATAGCGAACCCGACCACCGTTACCGAAGGGGTGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATc                                                                                                                                                                                     <  2:1844942/276‑1 (MQ=255)
                                                                                 ctgaactCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAAc                                                                                                                                                                                  >  1:2166803/5‑289 (MQ=255)
                                                                                           gggcgagtAGTTACCGCTCCCCTGCGCTCCATTTTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTAGTACGTTCATCCGGCGTATCTTTCCACTGCATGCTGTGTATGGTGCTGTGGCTACTGTTGTGCATGTCATAGCCAACCCGGCCACCGTTAACGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGT‑CGAAAGCGAGGTATCTCTCCAGTCACCAATATCAACATTAAAAcc                                                                                                                                                                         <  2:1543177/281‑1 (MQ=255)
                                                                                              cTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACct                                                                                                                                                                        >  1:1694233/1‑286 (MQ=255)
                                                                                                  tAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCtgtg                                                                                                                                                                  <  1:1229128/288‑1 (MQ=255)
                                                                                                     ttACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGCTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGt                                                                                                                                                              >  2:1560282/1‑289 (MQ=255)
                                                                                                      tACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGtt                                                                                                                                                             >  2:100124/1‑289 (MQ=255)
                                                                                                           cTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTa                                                                                                                                                                                                                                  >  1:466366/1‑216 (MQ=255)
                                                                                                                  gggCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGa                                                                                                                                                 <  1:898763/289‑1 (MQ=255)
                                                                                                                               cGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATc                                                                                                                                                                                     <  2:1105913/240‑1 (MQ=255)
                                                                                                                               cGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCaa                                                                                                                                                                                   <  2:1689391/242‑1 (MQ=255)
                                                                                                                                  acgtgcGGGTTGCAGTCCGGCAGACATGCCCCAGCTATGACGTTCATCCAGCGTAGCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGGTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTcca                                                                                                                                  <  2:548101/283‑1 (MQ=255)
                                                                                                                                  aCGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGa                                                                                                                                                 <  2:435976/273‑1 (MQ=255)
                                                                                                                                  aCGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTcca                                                                                                                                  >  2:1475801/1‑288 (MQ=255)
                                                                                                                                  aCGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTcca                                                                                                                                  >  2:368901/1‑288 (MQ=255)
                                                                                                                                       cGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGCTATCTCTCCAGTCACCAATATCAACATTAACACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGt                                                                                                                            >  1:1262214/1‑289 (MQ=255)
                                                                                                                                       cGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTcca                                                                                                                                  >  2:562548/1‑283 (MQ=255)
                                                                                                                                        ggATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGtt                                                                                                                           <  1:1475801/289‑1 (MQ=255)
                                                                                                                                         gatttgaGTCCGGCGGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGtt                                                                                                                           <  2:1031918/282‑1 (MQ=255)
                                                                                                                                                gTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCa                                                                                                                                                                                    <  1:1539125/224‑1 (MQ=255)
                                                                                                                                                gTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTa                                                                                                                    >  1:1674047/1‑288 (MQ=255)
                                                                                                                                                 tCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGc                                                                                                                  >  1:1854589/1‑289 (MQ=255)
                                                                                                                                                   cGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATc                                                                                                                                                                                     <  1:212323/220‑1 (MQ=255)
                                                                                                                                                    ggCAGTCATGGCCCAGCTATTACGTCCATGCAGCGTATCGGTCCACGACATGCGGTGTTTGGTGCTGGGGCTACTGTTTTGAATGTCATGGCCAACGCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAgg                                                                                                               <  2:1524017/289‑1 (MQ=255)
                                                                                                                                                           aTGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGt                                                                                                        <  1:2084186/289‑1 (MQ=255)
                                                                                                                                                                      aTTACGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAgg                                                                                             <  2:2165470/289‑1 (MQ=255)
                                                                                                                                                                         aCGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGt                                                                                                                                                                                                                                          >  2:173068/1‑146 (MQ=255)
                                                                                                                                                                         aCGTTCATCCAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGt                                                                                                                                                                                                                                          <  1:173068/146‑1 (MQ=255)
                                                                                                                                                                                 ccAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGt                                                                                  >  1:1179470/1‑289 (MQ=255)
                                                                                                                                                                                  cAGCGTATCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTa                                                                                 <  2:1179470/289‑1 (MQ=255)
                                                                                                                                                                                  cAGCGGATCGTTCCACGGAATGCGGTGTTGGGTGCTGTGGCTATGGTTTTGCAGGTCATAGCCAACCCGACCGCCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTa                                                                                 <  2:16581/289‑1 (MQ=255)
                                                                                                                                                                                        tttgtggcccgaaaTGGGGTGTATGGTGTTGTGGCTACTTTGTTGCATGTCAAAGCCAACCCGACCAACGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGt                                                                           <  2:1989296/276‑1 (MQ=255)
                                                                                                                                                                                        tgcgttcaagaacttGCGTTTTATGGTGCTGTGGCTACTGTTTTTCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGt                                                                           <  1:785659/275‑1 (MQ=255)
                                                                                                                                                                                        aTCGTTCCACGACATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGt                                                                           <  2:190610/289‑1 (MQ=255)
                                                                                                                                                                                               cacgacATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGTTTGGCGTAAAGGTGGAGGTTTAGTGGGGTAACCGGTTGGccc                                                                     >  2:1356236/6‑288 (MQ=255)
                                                                                                                                                                                               cacgacATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGccc                                                                     >  1:1599193/6‑288 (MQ=255)
                                                                                                                                                                                                       gCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATc                                                                                                                                                                                     <  2:2207355/168‑1 (MQ=255)
                                                                                                                                                                                                             tATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTa                                                                                 >  1:1018926/1‑262 (MQ=255)
                                                                                                                                                                                                             tATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTa                                                                                 <  2:1018926/262‑1 (MQ=255)
                                                                                                                                                                                                             tATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATc                                                      >  1:723801/1‑289 (MQ=255)
                                                                                                                                                                                                                ggTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCa                                                                    >  2:2019564/1‑272 (MQ=255)
                                                                                                                                                                                                                  tGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTCGCAGGTTGGCGTACAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGAtgg                                                     >  2:611121/1‑283 (MQ=255)
                                                                                                                                                                                                                  tGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCg                                                     >  1:874317/1‑285 (MQ=255)
                                                                                                                                                                                                                  tGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCg                                                     >  1:1614118/1‑285 (MQ=255)
                                                                                                                                                                                                                     tgtgGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTggg                                                                                                                                                                                                                                       <  1:1881063/105‑1 (MQ=255)
                                                                                                                                                                                                                     tgtgGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCAt                                                                                                                                      <  1:1286712/201‑1 (MQ=255)
                                                                                                                                                                                                                     tgtgGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCAt                                                                                                                                      >  2:1286712/1‑201 (MQ=255)
                                                                                                                                                                                                                     tgtgGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAg                                                                                              >  1:1767579/1‑241 (MQ=255)
                                                                                                                                                                                                                     tgtgGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGt                                                                           >  2:1865037/1‑260 (MQ=255)
                                                                                                                                                                                                                     tgtgGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGt                                                                           <  2:941027/260‑1 (MQ=255)
                                                                                                                                                                                                                     tgtgGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCCCGGATAAGTCGATCGTCTGttt                                              >  2:370790/1‑289 (MQ=255)
                                                                                                                                                                                                                       tgGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGt                                                                                                        >  1:515087/1‑229 (MQ=255)
                                                                                                                                                                                                                       tgGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGttttt                                            >  2:1247474/1‑289 (MQ=255)
                                                                                                                                                                                                                            aCTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTg                                                                                      <  2:2054560/242‑1 (MQ=255)
                                                                                                                                                                                                                            aCTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGCTAAGCTGATCGTCTGTTTTTCGt                                         >  1:1421518/1‑287 (MQ=255)
                                                                                                                                                                                                                            aCTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAg                                                            <  2:1765739/268‑1 (MQ=255)
                                                                                                                                                                                                                            aCTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGt                                         >  2:2228842/1‑287 (MQ=255)
                                                                                                                                                                                                                              tGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGTTGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGcc                                                                      >  1:100822/1‑256 (MQ=255)
                                                                                                                                                                                                                                   tGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCgg                                                                            <  1:590382/245‑1 (MQ=255)
                                                                                                                                                                                                                                   tGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTTTGTTTTTCGTCCTggcct                                 >  2:895122/1‑284 (MQ=255)
                                                                                                                                                                                                                                      aTGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGTCCTGCGCATCg                              <  1:408299/288‑1 (MQ=255)
                                                                                                                                                                                                                                          cATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTa                                                                                                                    <  2:973483/198‑1 (MQ=255)
                                                                                                                                                                                                                                          cATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTa                                                                                                                    >  1:973483/1‑198 (MQ=255)
                                                                                                                                                                                                                                          cATAGCCAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGTCCTGCGCATCGCTGt                          <  1:563878/288‑1 (MQ=255)
                                                                                                                                                                                                                                                cAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGTCCTGCGCATCGCTGTCGTTGt                    <  2:1625391/288‑1 (MQ=255)
                                                                                                                                                                                                                                                cAACCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGTCCTGCGCATCGCTGTCGTTGt                    <  2:70666/288‑1 (MQ=255)
                                                                                                                                                                                                                                                  aCCCGACCACCGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGTACTGCGCAGCGACGTCGTTGTAtt                 >  2:1881694/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       accaccGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCa                                                                    <  2:1214699/233‑1 (MQ=255)
                                                                                                                                                                                                                                                       accaccGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGTCCTGCGCATCGCTGTCGTTGTATTTGTGa            >  1:644849/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        ccaccGTTACCGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGAt                                                                                                  >  1:935050/1‑202 (MQ=255)
                                                                                                                                                                                                                                                                 ccGAAGGGGAGCGAAATCG‑ACAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAATGACGTCGAAATCG‑AGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTCAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGTCCTGCGCATCGCTGTCGTTGTATTTGTGATCCAGATAGt  <  1:368901/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                  ||||                                                                                                                                                                                                                                                                              
CGGTGAAAGAACCGCTCCAGCTGCTGCTGACGGAACTGTAATCACTGGCGGCATAGGTACCAGAAATATCCCACTCACCCGCACTACTCAGGTGCTGATAGTTACCGCTCACCTGGGCTCCATTGTCCGGACGATCGGATTGCAGTCCGGCAGACATGCCCCAGCTATTACGTTCATCCAGCGTATCGTTCCAGCTCATGCGGTGTATGGTGCTGTGGCTACTGTTTTGCATGTCATAGCCAACCCGACCACCGTTACCGAAGGGGAGGCTAATGC‑TCAGATAAATCTGGTTGTCGCGATCTTTATCTTCGTAGTGGGTCGTATTGAAACTCGTGCTAATGC‑TGATATCTCTCCAGTCACCAATATCAACATTAAAACCTGCTGTGATGTTGGCGGTCGTGGAGGCGTCTGCATTCCACCAGGTTTGATGTAGCAGGTTGGCGTAAAGATTGAGGTTTAGTGGGGTAATCGGTTGGCCCACGGATAAGCTGATCGTCTGTTTTTCGTCCTGCGCATCGCTGTCGTTGTATTTGTGATCCAGATAGT  >  CP042583/613077‑613622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A