Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 671,633 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583671,6330GC99.6% 634.6 / NA 268intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (152/114);  minor base T (0/1);  total (152/116)
Fisher's exact test for biased strand distribution p-value = 4.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583671,6340CG99.2% 624.1 / NA 268intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/2);  new base G (152/114);  total (152/116)
Fisher's exact test for biased strand distribution p-value = 1.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP042583671,6350TA99.6% 636.6 / NA 268intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (152/115);  minor base C (0/1);  total (152/116)
Fisher's exact test for biased strand distribution p-value = 4.33e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 268 total aligned reads displayed.

CGTCGGCAATCAGCAAGATACCTTCGCGATCGCATATTTTGCGGATTCGTTTTAACCATTCCGGATGGTACATGCGCATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATACTGTTATCCGGATCGCACACGC‑‑TCATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGGCTCATGGCATCAATTTGGCTCTTCATCGCCGCATTAAGCTGCGGGTGATTG  >  CP042583/671356‑671915
                                                                                                                                                                                                                                                                                     |||||                                                                                                                                                                                                                                                                                         
                            aTCGCATATTTTGCGGATTCGTTTTAACCATTCCGGATGGTACATGCGCATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCgg                                                                                                                                                                                                                                                      >  1:1000131/1‑289 (MQ=255)
                             tCGCATATTTTGCGGATTCGTTTTAACCATTCCGGATGGTACATGCGCATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCgg                                                                                                                                                                                                                                                      <  2:1278419/288‑1 (MQ=255)
                                         cGGATTCGTTTTAACCATTCCGGATGGTACATGCGAATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGCGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGCGTTATCCGGATCGCACACCG‑‑ACATCGCGCCACAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAAc                                                                                                                                                                                                                                         >  1:1601364/1‑289 (MQ=255)
                                              tCGTTTTAACCATTCCGGATGGTACATGCGCATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCACTCATCCCATTCGCCACCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTgg                                                                                                                                                                                                                                    <  1:897522/289‑1 (MQ=255)
                                                     aaCCATGCCGAATGATACATGCGCATCCCGCCTTCACCCTGGACAATCTGCTCACAGCCCACCGCCGCGATTTCAGGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCAGTCGCCATCCATGCGGCTTTGAGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCtt                                                                                                                                                                                                                             <  1:1898641/289‑1 (MQ=255)
                                                      aCCATTCCGGATGGTACATGCGCATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCtt                                                                                                                                                                                                                             >  1:1454803/1‑288 (MQ=255)
                                                             cGGATGGTACATGCGCATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCC‑TTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTgg                                                                                                                                                                                                                    <  1:437374/289‑1 (MQ=255)
                                                                    tACATGCGCATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGaa                                                                                                                                                                                                                                                    >  2:1608013/1‑251 (MQ=255)
                                                                    acccttcgcATCCCCCCTGCTCCCTGTACACTCGGCTAAATGATTTCCGCGGCGATTGCATGACGATGCGAAGCCATACGGCGAGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCGTCCATGCGGCTTTTCGGGGCGGTAGCAAACAAGTTTTCTGGCAGGTAGCCTTTCCACAGTCTGTGCATTGAGTTATCCGGATCGCACGCCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGc                                                                                                                                                                                                               <  2:1324240/282‑1 (MQ=255)
                                                                         gcgcATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGt                                                                                                                                                                                                           >  1:1181477/1‑287 (MQ=255)
                                                                              tCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCCAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCa                                                                                                                                                                                                     >  1:936457/1‑288 (MQ=255)
                                                                              tCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCa                                                                                                                                                                                                     >  1:1965287/1‑288 (MQ=255)
                                                                              tCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCa                                                                                                                                                                                                     >  1:1112039/1‑288 (MQ=255)
                                                                              tCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCa                                                                                                                                                                                                     >  1:1933353/1‑288 (MQ=255)
                                                                              tCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCGTCGCCTTTGGCTTGCCAGTACTGCa                                                                                                                                                                                                     >  1:352863/1‑288 (MQ=255)
                                                                              tCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGGGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAAGGCGGGCGCGCTTCGGCTTTGGCTTGCCAGGAcctgt                                                                                                                                                                                                     >  2:191759/1‑284 (MQ=255)
                                                                                 cGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACg                                                                                                                                                                                                  >  1:1648386/1‑288 (MQ=255)
                                                                                    cTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTgg                                                                                                                                                                                                                                    <  2:1387873/251‑1 (MQ=255)
                                                                                         cccTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCa                                                                                                                                                                                         >  1:255032/1‑289 (MQ=255)
                                                                                               aCAATCAGCCCAATGATCCCCGCCGAGATGTCATGCCGAGCCGCCGCCATCAGGCGGGAACAGCCCACCATATCGCGCTCCTCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGGGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGTATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAACACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGcc                                                                                                                                                                                    <  2:2197069/288‑1 (MQ=255)
                                                                                                   tCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCTGTACTTCCACGCCCTTTTCATcccccact                                                                                                                                                                                >  2:1827965/1‑284 (MQ=255)
                                                                                                   tCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACtt                                                                                                                                                                                >  1:1802197/1‑288 (MQ=255)
                                                                                                      gCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCg                                                                                                                                                                                                                                                                        >  2:1522013/1‑197 (MQ=255)
                                                                                                      gCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTa                                                                                                                                                                                                          >  1:1549922/1‑259 (MQ=255)
                                                                                                           aTGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTa                                                                                                                                                                      <  1:1947272/289‑1 (MQ=255)
                                                                                                                      cgcgATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCGTCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAg                                                                                                                                                           >  1:1525416/1‑289 (MQ=255)
                                                                                                                        cgATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCCCTTC‑CACCGCTACGGAACCGGAGt                                                                                                                                                          >  1:511936/1‑288 (MQ=255)
                                                                                                                               aTGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACACCGACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCga                                                                                                                                                    <  2:1003743/289‑1 (MQ=255)
                                                                                                                                     aTGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCg                                                                                                                                                                                                                                                       >  1:12075/1‑183 (MQ=255)
                                                                                                                                     aTGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCg                                                                                                                                                                                                                                                       <  2:12075/183‑1 (MQ=255)
                                                                                                                                                       ggCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAgg                                                                                                                                                                                                                                                                             >  2:1515988/1‑143 (MQ=255)
                                                                                                                                                       ggCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAgg                                                                                                                                                                                                                                                                             <  1:1515988/143‑1 (MQ=255)
                                                                                                                                                         cAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATTCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCCCGCCAAAGGTCTCGACATGATAACAATTGCGGAAGGTCAGAAAACGCTGACGTGCCTCGCCTTTGGCTTGCCAGTACTGCAACGCACCTTTCCTCGCCACTTC‑CACCGCCTCGGAACCCCGCTCCGCCGGAACAAAGGACTCcagcggcagcgg                                                                                                                           >  2:2082441/1‑286 (MQ=255)
                                                                                                                                                                  ccaTATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTgcggcg                                                                                                                         <  2:1658201/279‑1 (MQ=255)
                                                                                                                                                                  ccaTATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTgcggcg                                                                                                                         >  1:1658201/1‑279 (MQ=255)
                                                                                                                                                                  cagtatCGCGCGTGTCCCCTTCGCCATCCATGCGGCTTTGGGGGGCGGGAGCAAACAGGTTTTCCGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGccac                                                                                                               <  2:658045/286‑1 (MQ=255)
                                                                                                                                                                       tCGCGCTCATCCCATTCGCCATCCATGCGGCATTGCGGGGCGGGAGCAAACAGGTGTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATACGGATCGCACACCG‑‑AAATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGccacca                                                                                                             <  1:1029168/286‑1 (MQ=255)
                                                                                                                                                                        cgcgCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGttt                                                                                                         >  1:1076703/1‑289 (MQ=255)
                                                                                                                                                                          cgcTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGc                                                                                                       >  2:28794/1‑289 (MQ=255)
                                                                                                                                                                            cTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTTCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGATAAAAACGCACGCCAGCGGTTGCGGCGACCTCGCCCCCAGTTTGCgg                                                                                                     >  2:491921/1‑289 (MQ=255)
                                                                                                                                                                            cTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGccacca                                                                                                             >  1:1103805/1‑281 (MQ=255)
                                                                                                                                                                            cTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGccacca                                                                                                             <  2:1103805/281‑1 (MQ=255)
                                                                                                                                                                            cTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACCGAACCGGCGTCCGCGAGAAAAACGCACTCCAGCGGTTGCTGCGTCAGACCCACCAGTTTGCg                                                                                                      >  2:1890208/1‑288 (MQ=255)
                                                                                                                                                                             tCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCgg                                                                                                     >  1:2114421/1‑288 (MQ=255)
                                                                                                                                                                              cATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGca                                                                                                   <  1:162237/289‑1 (MQ=255)
                                                                                                                                                                               aTCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCt                                                                                                                                                                                                                  >  2:1881355/1‑178 (MQ=255)
                                                                                                                                                                               aTCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGcac                                                                                                  >  1:2054693/1‑289 (MQ=255)
                                                                                                                                                                               aTCCCATTCGCCATCCAGGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTCGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGTCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCTTTTTCATCGCTACTTC‑CACCGCTa                                                                                                                                                                      <  1:1358573/221‑1 (MQ=255)
                                                                                                                                                                                     ttCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGCGAAAAACGCACTCCAg                                                                                                                                    >  2:2004457/1‑249 (MQ=255)
                                                                                                                                                                                     ttCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCa                                                                                            <  2:1454803/289‑1 (MQ=255)
                                                                                                                                                                                          catccatGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAAtggc                                                                                       <  2:453489/289‑1 (MQ=255)
                                                                                                                                                                                          catccatGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAAtggc                                                                                       <  1:188904/289‑1 (MQ=255)
                                                                                                                                                                                            tccatGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGccacca                                                                                                             >  1:1826795/1‑265 (MQ=255)
                                                                                                                                                                                             ggcatcGGCTTTGCGGGGCGGTTGCAAACAGGTTTTCGGGCAGGTAGCCTTTCCACAGACTGTGCCTTGAGTTATCCGGTTCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCGTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAAtggct                                                                                      <  2:2040308/282‑1 (MQ=255)
                                                                                                                                                                                                tGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTCACGCCATCATAACCATTGCGGCAGGACAGAAAACGCTGGCGCGCTTCGCCTTTGGACTGCCAGTACTGTAACGCCATTTTCATCG‑CACATCTCACCGCCACGAAACTGGAGTCCGCGAGGCAAACTGACTGCAAGCGTTGCGTCGTCAGCGCAAACAACTAGCGGCCAAACGCAAGGGGTGgcgc                                                                                 >  2:354366/1‑289 (MQ=255)
                                                                                                                                                                                                tGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGc                                                                                                                                                                        >  2:1619941/1‑202 (MQ=255)
                                                                                                                                                                                                tGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGc                                                                                                                                                                        <  1:1619941/202‑1 (MQ=255)
                                                                                                                                                                                                tGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGgcg                                                                                  >  1:1162095/1‑288 (MQ=255)
                                                                                                                                                                                                 tcGGCTTTGCGGGGCGGGCGCAAAAAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGGCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGgcgc                                                                                 <  2:1648386/287‑1 (MQ=255)
                                                                                                                                                                                                 gCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCa                                                                                >  1:686371/1‑289 (MQ=255)
                                                                                                                                                                                                    gCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGca                                                                                                   >  2:1951987/1‑267 (MQ=255)
                                                                                                                                                                                                        tGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGcc                                                                                                                                                                                                                         <  1:2193134/146‑1 (MQ=255)
                                                                                                                                                                                                        tGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGa                                                                         <  2:795113/289‑1 (MQ=255)
                                                                                                                                                                                                                            gTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGca                                                                                                   <  1:237501/243‑1 (MQ=255)
                                                                                                                                                                                                                                  tGGCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCACCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATgcgacatg                                               <  2:255032/289‑8 (MQ=255)
                                                                                                                                                                                                                                    gCAGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGc                                             >  1:1412784/1‑289 (MQ=255)
                                                                                                                                                                                                                                      aGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGca                                                                                                   >  1:2136300/1‑233 (MQ=255)
                                                                                                                                                                                                                                      aGGTAGCCTTTCCACAGACTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGAATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCCTTTTCATCGCCCCTTC‑CACCGCTACGTAACCGGAGTCCCCGCGAAAAACGCACCCCAGCGGTTGCGGCGTCATCGCCCCCAGTTTGCGGCCCACCCCAACGGCTGGCGCAAGGGTGCTACCCCCAAACATCACATGGcacacgcca                                            >  2:1969345/1‑283 (MQ=255)
                                                                                                                                                                                                                                                       aCTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCCCAGCCCAATGGCTGGCGCATGGGGGATACCGCCAAACATCACATGCGACCTGGCATCAAATTGACACTTCAt                           >  2:557885/1‑288 (MQ=255)
                                                                                                                                                                                                                                                       aCTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATc                          >  1:2205055/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        cTGTGCATTGAGTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATcg                         <  1:491921/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          gtgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCgg                                                                                                     >  1:18485/10‑211 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAAtggc                                                                                       >  2:733271/9‑224 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAAtggc                                                                                       <  1:733271/216‑1 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGgcgc                                                                                 >  2:906043/9‑230 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATCCCGCCAACCAGCACATGCGCCATGGCATCCACGTGCGACTTCATcgcc                       >  2:1371444/9‑288 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATTCCACATGGCATCAATTTGCGACTTCACcgcc                       >  2:1802552/9‑288 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCCATTTGCGACTTCATcgcc                       >  1:977323/9‑288 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATcgcc                       >  1:126420/9‑288 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATcgcc                       >  1:1645234/9‑288 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATcgcc                       >  1:611920/9‑288 (MQ=255)
                                                                                                                                                                                                                                                           tgcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTCCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCTAGAAAAACGCACTCCACCGGTTGCGGCGTCATCGCCACCAGCTTGCGGCACAGCTCAATGGCTGCCGCATGGGTTATACCGCAAAACATCACATGCGACATGGCCTCAATGTGCGACTTCATcgcc                       >  2:1760328/9‑288 (MQ=255)
                                                                                                                                                                                                                                                            gcattgagTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGccac                                                                                                               <  2:2172664/192‑1 (MQ=255)
                                                                                                                                                                                                                                                              attgagTTAGCCGGATCGCAACCCG‑‑ACAGCGGGCCAAAGGGATCGCCATGATAACCATTGCGGAAGGTCAGAAACCGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCAt                   <  2:1181477/284‑1 (MQ=255)
                                                                                                                                                                                                                                                                  agTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATg                                                      >  1:317549/2‑250 (MQ=255)
                                                                                                                                                                                                                                                                   gTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGcc                                                                  >  1:1878242/1‑237 (MQ=255)
                                                                                                                                                                                                                                                                   gTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACCTGGCATCAATTTGCCACTTCATCGCCGCCTGAAg               >  2:155569/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                   gTTATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCATTaa                >  2:1860249/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                     tATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAAtggc                                                                                       >  1:1707856/1‑214 (MQ=255)
                                                                                                                                                                                                                                                                     tATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAAtggc                                                                                       <  2:1707856/214‑1 (MQ=255)
                                                                                                                                                                                                                                                                     tATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAACCATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCATTAAGCt             >  2:330503/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                     tATCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCATTAAGCTg            <  1:2024396/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGc                                                                                                                                                                        <  1:174974/131‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tCCGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGca                                                                                                   >  2:1634569/1‑200 (MQ=255)
                                                                                                                                                                                                                                                                        ccGGATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCATTAAGCTGCgg         <  1:1429250/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                          ggATCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCATTAAGCTGCGGGt       <  1:2037494/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                            aTCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCATTAAGCTGCGGGTGa     >  1:766230/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            aTCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCATTAAGCTGCGGGTGa     >  1:820175/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            aTCGCACACCG‑‑ACATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCATTAAGCTGCGGGTGa     >  1:1350669/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                               gCACACCC‑‑ACATCGTGCCAAAGGCATCGCCATGATAACCATTGCGGAAGGTCAGAATACGCTTGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACAGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGCGACATGGCATCAATTTGCGACTTCATCGCCGCATTAAGCTGCGGGTGATTg  <  2:2054693/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                     |||||                                                                                                                                                                                                                                                                                         
CGTCGGCAATCAGCAAGATACCTTCGCGATCGCATATTTTGCGGATTCGTTTTAACCATTCCGGATGGTACATGCGCATCCCGCCTGCGCCCTGGACAATCGGCTCAATGATCACCGCCGCGATTTCATGACGATGCGCCGCCATCAGGCGGGCAAAGCCCACCATATCGCGCTCATCCCATTCGCCATCCATGCGGCTTTGCGGGGCGGGAGCAAACAGGTTTTCTGGCAGGTAGCCTTTCCACAGACTGTGCATACTGTTATCCGGATCGCACACGC‑‑TCATCGCGCCAAAGGTATCGCCATGATAACCATTGCGGAAGGTCAGAAAACGCTGGCGCGCTTCGCCTTTGGCTTGCCAGTACTGCAACGCCATTTTCATCGCCACTTC‑CACCGCTACGGAACCGGAGTCCGCGAGAAAAACGCACTCCAGCGGTTGCGGCGTCATCGCCACCAGTTTGCGGCACAGCTCAATGGCTGGCGCATGGGTGATACCGCCAAACATCACATGGCTCATGGCATCAATTTGGCTCTTCATCGCCGCATTAAGCTGCGGGTGATTG  >  CP042583/671356‑671915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A