Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,936,847 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,936,8470AT99.4% 397.8 / NA 166intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (75/90);  minor base G (0/1);  total (75/91)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,936,8480CG99.4% 386.8 / NA 166intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (74/91);  minor base T (1/0);  total (75/91)
Fisher's exact test for biased strand distribution p-value = 4.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,936,8490TA100.0% 393.5 / NA 166intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (75/91);  total (75/91)

Only 100 of 166 total aligned reads displayed.

ATAAAGATCGAAATCAGGGATATCAGCACTAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCACTCAAGCATTGATTGGTACTACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTACTCTTCAAGCTAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAA  >  CP042583/1936568‑1937122
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                 
aTAAAGATCGAAATCAGGGATATCAGCACTAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCaac                                                                                                                                                                                                                                                                            >  1:944414/1‑288 (MQ=255)
aTAAAGATCGAAATCAGGGATATCAGCACTAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCaac                                                                                                                                                                                                                                                                            >  1:1245662/1‑288 (MQ=255)
        cGAAATCAGGGATATCAGCACTAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCg                                                                                                                                                                                                                                                                    >  1:352900/1‑289 (MQ=255)
                    tctCAGCAACAAAAGCGTTGGCCAGTACACGGGCATCTTGAGTACCTTTAACCTTAGTACCTGTTTTATCTGACAAGCATTGATTGGTTGACCGTTCGCAACGTTCAGGATGACGAAACAACACGACAACCGGGTGCTGCTGTGCCAGTCTGGACAGTGTTTTATTGCCGATACGTGGCAAACCATTGCTACTCAAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATGTATTTTTTGGACTTCAACGACGAGCGGCAAAAAGCTaa                                                                                                                                                                                                                                                        <  2:2018861/287‑1 (MQ=255)
                       cAGCACTAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGATTTCAACGACGAGCGCCAAAACGCTAacac                                                                                                                                                                                                                                                     >  2:87410/1‑289 (MQ=255)
                        aGCACTAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTTTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACg                                                                                                                                                                                                                                                    <  2:474543/289‑1 (MQ=255)
                           aCTAAAAGCTTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAATCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACg                                                                                                                                                                                                                                                    <  1:2023828/286‑1 (MQ=255)
                           aCTAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACg                                                                                                                                                                                                                                                    <  1:1535751/286‑1 (MQ=255)
                             tAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTaaa                                                                                                                                                                                                                                                >  1:1457362/1‑288 (MQ=255)
                             tAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAAc                                                                                                                                                                                                                                               <  1:690180/289‑1 (MQ=255)
                                aaGCGTTGCCCAGTTGACGGGAATGCTGGGTACCTTTAACCGTGATACCTTTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAGCAACACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTcc                                                                                                                                                                                                                                            <  2:1412621/289‑1 (MQ=255)
                                aaGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTcc                                                                                                                                                                                                                                            <  1:781747/289‑1 (MQ=255)
                                aaGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTcc                                                                                                                                                                                                                                            <  1:1313253/289‑1 (MQ=255)
                                    gTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc                                                                                                                                                                                                                                             <  2:1533157/284‑1 (MQ=255)
                                     ttGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACCCCAGGCGGCATGAGGACCCAGTCCGGCAATTGCATCGAGCGCCAGTATAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGAAAAAAGCTAACAAGTAAACTACACCta                                                                                                                                                                                                                                       >  2:1696042/1‑289 (MQ=255)
                                       gCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCtata                                                                                                                                                                                                                                     >  2:2032736/1‑289 (MQ=255)
                                             tgcgcGGGCAGCCTGGGTACAGTTAACCGTAATACCTGTTGTATAGGACAAGCATGGAGTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGAATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc                                                                                                                                                                                                                                             <  1:532976/271‑1 (MQ=255)
                                               cACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAgcg                                                                                                                                                                                                                             <  1:1885362/289‑1 (MQ=255)
                                                       tCCTGGTGACCTGTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGTTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGa                                                                                                                                                                                                                     <  2:2092807/289‑1 (MQ=255)
                                                       tCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTTACTTAAACGAAGAGCGTCAAACAGCTAACCCGTTAACTCCACCTATAGACatgtatcttataa                                                                                                                                                                                                                     >  2:532976/1‑277 (MQ=255)
                                                       tCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCt                                                                                                                                                                                                                                                          >  2:2075091/1‑252 (MQ=255)
                                                       tCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCt                                                                                                                                                                                                                                                          <  1:2075091/252‑1 (MQ=255)
                                                       tCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTcc                                                                                                                                                                                                                                            >  2:1874610/1‑266 (MQ=255)
                                                       tCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGa                                                                                                                                                                                                                     >  2:2230089/1‑289 (MQ=255)
                                                       tCCTGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGAATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCt                                                                                                                                                                                                                                                          <  2:398721/252‑1 (MQ=255)
                                                          tGGGTACCTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACaa                                                                                                                                                                                                                  <  1:408324/289‑1 (MQ=255)
                                                                ccTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCGACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCg                                                                                                                                                                                                            <  1:1093993/289‑1 (MQ=255)
                                                                ccTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCg                                                                                                                                                                                                            <  1:1475764/289‑1 (MQ=255)
                                                                 cTTTAACCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGt                                                                                                                                                                                                           >  1:131850/1‑289 (MQ=255)
                                                                      aCCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCaaa                                                                                                                                                                                                                                                               >  1:2252696/1‑232 (MQ=255)
                                                                      aCCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc                                                                                                                                                                                                                                             >  1:841027/1‑250 (MQ=255)
                                                                      aCCGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc                                                                                                                                                                                                                                             <  2:841027/250‑1 (MQ=255)
                                                                        cGTAATACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTg                                                                                                                                                                                                    <  2:100130/289‑1 (MQ=255)
                                                                           aaTACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc                                                                                                                                                                                                                                             >  2:1153914/1‑245 (MQ=255)
                                                                           aaTACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc                                                                                                                                                                                                                                             <  1:1153914/245‑1 (MQ=255)
                                                                           aaTACCTGTTTTATCTGACAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGc                                                                                                                                                                                                 <  2:364291/289‑1 (MQ=255)
                                                                                             cAAGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCt                                                                                                                                                                                                                                                          <  1:760475/214‑1 (MQ=255)
                                                                                              aaGCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAAtt                                                                                                                                                                              <  2:341421/289‑1 (MQ=255)
                                                                                                gCATTGATTGGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc                                                                                                                                                                                                                                             <  2:1094059/224‑1 (MQ=255)
                                                                                                    tgattgGTTGAACGGTCGCACCGGTCAGCACGACGAAACGAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGGGTTTTATTGTCAATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGt                                                                                                                                                                        <  2:131850/289‑1 (MQ=255)
                                                                                                    tgattgGTTGAACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGt                                                                                                                                                                        <  1:798030/289‑1 (MQ=255)
                                                                                                          gttgcacGGCCGCAACGTTAAGCATGACGAAACAAACCGACAACCGGGGGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAACCCATTGCTAGTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGgtg                                                                                                                                                                   <  2:2181617/283‑1 (MQ=255)
                                                                                                          gttgaacGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGgtgt                                                                                                                                                                  >  1:958902/6‑289 (MQ=255)
                                                                                                           ttgagcGGTCGCAACGTGCAGCATGACGAAACAAAACGCCACCCGGGGGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTa                                                                                                                                                                 <  2:448149/284‑1 (MQ=255)
                                                                                                            agaacGGTCTCAACGTTGAGCATGAAGAAAAAAAACGAACACCGAGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTAGTGTCGATACGTGGCAAACCATTGATACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTaa                                                                                                                                                                <  2:1268694/286‑1 (MQ=255)
                                                                                                                cGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGc                                                                                                                                                                                                 <  1:2112677/252‑1 (MQ=255)
                                                                                                                cGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGc                                                                                                                                                                                                 >  2:2112677/1‑252 (MQ=255)
                                                                                                                cGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTaa                                                                                                                                                                >  1:1254628/1‑285 (MQ=255)
                                                                                                                cGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATAtt                                                                                                                                                            >  2:623939/1‑289 (MQ=255)
                                                                                                                   tCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTaa                                                                                                                                                          <  2:1756570/288‑1 (MQ=255)
                                                                                                                             cAGCATGACGACACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCAATACGTGGCAAACCATTGTTACACCAGGCGGCATGAGTCCCCAGTCCGGCCATTGCAGCGAGCGCCAGTAACATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCACAAAGCTAACACGTAAACCCAAACTATCGACAAGCGCAACCAGACAATTACCGCGAACTTCAGCTACATTTCTGGCGATAATTCGCCTGTCGTGTCATATTAAAAATCCTACGa                                                                                                                                               >  2:1081677/1‑289 (MQ=255)
                                                                                                                             cAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc                                                                                                                                                                                                                                             >  2:397621/1‑195 (MQ=255)
                                                                                                                             cAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc                                                                                                                                                                                                                                             <  1:397621/195‑1 (MQ=255)
                                                                                                                             cAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTc                                                                                                                                                                             <  2:151610/259‑1 (MQ=255)
                                                                                                                             cAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTc                                                                                                                                                                             >  1:151610/1‑259 (MQ=255)
                                                                                                                                 aTGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGGTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGt                                                                                                                                            <  2:1245662/288‑1 (MQ=255)
                                                                                                                                                    aCCGGTTGCTGCTTTGCCCGTCTGGCCAGTGTTTTATTGTCGATACGTGGCCACCCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAAtt                                                                                                                        <  2:214694/289‑1 (MQ=255)
                                                                                                                                                           gctgctGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCa                                                                                                                  <  2:1457362/288‑1 (MQ=255)
                                                                                                                                                                tgtgCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCa                                                                                                            <  2:1672107/289‑1 (MQ=255)
                                                                                                                                                                tgtgCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCa                                                                                                            <  1:898548/289‑1 (MQ=255)
                                                                                                                                                                tgtgCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCa                                                                                                            <  1:861690/289‑1 (MQ=255)
                                                                                                                                                                  tgCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTTAGCTATATTTCTTGCTAAAATCGACAGTCGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGACTCAAATTTTTGCCAAATGTaaa                                                                                                          >  2:1036101/1‑289 (MQ=255)
                                                                                                                                                                       gTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTaa                                                                                                                                                          <  1:557894/236‑1 (MQ=255)
                                                                                                                                                                       gTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAAGTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTaa                                                                                                                                                          >  2:557894/1‑236 (MQ=255)
                                                                                                                                                                         cTGGCCATGTTTTTATTTTCGATACGTTGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTaaa                                                                                                   <  1:1363272/289‑1 (MQ=255)
                                                                                                                                                                            gCCAGTGTTTTATTTTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAATCGCAACCAGACAATTACCGTGAACTTGCGCTACATTTCTGGCGATAATTCGCAGCTGGTGTAATATTAAAAATCCTACTATGTCGGCCAACTGCCTCAAAATTTTTCCAAATGCCAATCCTAAATa                                                                                                 >  2:349768/1‑288 (MQ=255)
                                                                                                                                                                            gCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAAc                                                                                                                                                                                                                         >  1:1829679/1‑168 (MQ=255)
                                                                                                                                                                            gCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCa                                                                                                            >  1:431443/1‑277 (MQ=255)
                                                                                                                                                                                      tATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCa                                                                                                            <  1:1105007/267‑1 (MQ=255)
                                                                                                                                                                                         tGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATaaa                                                                                   <  1:1404600/289‑1 (MQ=255)
                                                                                                                                                                                             gATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAAtt                                                                               >  1:405381/1‑289 (MQ=255)
                                                                                                                                                                                             gATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAAtt                                                                               >  1:61387/1‑289 (MQ=255)
                                                                                                                                                                                                       aaaCCATTGCTAATCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTa                                                                     <  1:1872723/289‑1 (MQ=255)
                                                                                                                                                                                                         aCCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACg                                                                   <  1:238819/289‑1 (MQ=255)
                                                                                                                                                                                                                    tCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAg                                                        <  2:1274205/289‑1 (MQ=255)
                                                                                                                                                                                                                        ggcggcATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGtt                                                      >  2:1496149/1‑287 (MQ=255)
                                                                                                                                                                                                                        ggcggcATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTAACGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCATCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATAACAAAATTTCAATATTTAAGTCTAatataaatt                                                      >  2:1667045/1‑282 (MQ=255)
                                                                                                                                                                                                                           ggcATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTa                                                 >  1:833087/1‑289 (MQ=255)
                                                                                                                                                                                                                             cATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCa                                                                                                                  >  1:103850/1‑222 (MQ=255)
                                                                                                                                                                                                                             cATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAg                                               >  1:2067840/1‑289 (MQ=255)
                                                                                                                                                                                                                              aTGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAat                                                                                                                                                               >  2:1170247/1‑176 (MQ=255)
                                                                                                                                                                                                                              aTGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAgg                                              >  2:622561/1‑289 (MQ=255)
                                                                                                                                                                                                                               tGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGgt                                             <  2:1080560/289‑1 (MQ=255)
                                                                                                                                                                                                                                  gTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGgtta                                           <  2:833087/288‑1 (MQ=255)
                                                                                                                                                                                                                                  gTACCCAGTCCGGCAATTGCAGCGAGCGACAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGgtta                                           <  2:1393788/288‑1 (MQ=255)
                                                                                                                                                                                                                                           ccGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATAtt                                 >  1:1172799/1‑289 (MQ=255)
                                                                                                                                                                                                                                             ggCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCt                               >  1:2168514/1‑289 (MQ=255)
                                                                                                                                                                                                                                             ggCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCt                               >  1:1543927/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    gCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCa                                                                                                            >  1:672822/1‑205 (MQ=255)
                                                                                                                                                                                                                                                    gCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCa                                                                                                            >  2:745045/1‑205 (MQ=255)
                                                                                                                                                                                                                                                    gCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCa                                                                                                            <  2:672822/205‑1 (MQ=255)
                                                                                                                                                                                                                                                    gCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTa                        >  1:199687/1‑289 (MQ=255)
                                                                                                                                                                                                                                                            cgcCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAAttt                                                                              >  2:952802/1‑227 (MQ=255)
                                                                                                                                                                                                                                                             gcCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGc                                                                                                                                                                           >  1:721544/1‑133 (MQ=255)
                                                                                                                                                                                                                                                             gcCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGc                                                                                                                                                                           <  2:721544/133‑1 (MQ=255)
                                                                                                                                                                                                                                                               cAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCt              >  2:1759644/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                       tgatgaTATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGc     <  1:308788/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                          tgatATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCaaa  <  1:1667045/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                            atatatTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCaaa  <  1:276442/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                            atatatTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCaaa  >  2:276442/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                 
ATAAAGATCGAAATCAGGGATATCAGCACTAAAAGCGTTGCCCAGTTCACGGGCATCCTGGGTACCTTTAACCGTAATACCTGTTTTATCACTCAAGCATTGATTGGTACTACGGTCGCAACGTTCAGCATGACGAAACAAAACGACAACCGGGTGCTGCTGTGCCAGTCTGGCCAGTGTTTTATTGTCGATACGTGGCAAACCATTGCTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTACTCTTCAAGCTAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATTGAGCTACATTTCTGGCGATAATTCGCAGTTGGTGTAATATTAAAAATCCTACGATGTCGGCAAAATGCCTCAAAATTTTGCCAAATGCAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAA  >  CP042583/1936568‑1937122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A