Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	592,776	3 bp→CGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	592,776	0	G	C	99.7%	712.3 / NA	301	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (145/155); total (146/155)
Fisher's exact test for biased strand distribution p-value = 4.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	592,777	0	C	G	99.3%	701.3 / NA	301	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (1/1); new base G (144/153); total (146/155)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	592,778	0	T	A	99.7%	714.0 / NA	301	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (1/0); new base A (144/155); total (146/155)
Fisher's exact test for biased strand distribution p-value = 4.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 301 total aligned reads displayed.

ATGACCAGGGCAATCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGGCTTTCGCAATTCTCAAAGACAC‑CGCTAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGGCTTAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTACTCATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACA  >  CP042583/592500‑593052

|||

atgaCCAGGGCAATCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACAGGGATGCCATAACCCGTGGCATCGATTTCACCTATTTTTCCGCATGTAACATCGTTGAGCGATAAAACTAtt                                                                                                                                                                                                                                                                          >  2:3164903/1‑289 (MQ=255)

   ccaaGGCCAATC‑AACGCGGTGTTAACTTGGTTGGCAAAATCGAGCCGTTGCGGGGAGGAAGGGGGGGCG‑AGGTGAAGTTCATAAATGGC‑GGGAGCCGTTTCTAAATGGGCGA‑CATAAGAATCTCCTCCCGATTTGCCATTCTCAAAGACCA‑CCCGAAATCCGGGCAAATACTCCGCGGGTAAACGTTTCTGATTTTTCGTAGGCATAAAAACCCGGAAGCCAAAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTgccg                                                                                                                                                                                                                                                                      <  2:411728/286‑1 (MQ=255)

     cAGGGCAATCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTgccg                                                                                                                                                                                                                                                                      >  2:1217282/1‑288 (MQ=255)

     cAGGGCAATCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACA‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAAATATTgccg                                                                                                                                                                                                                                                                      >  1:85502/1‑288 (MQ=255)

        ggCAATCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCcac                                                                                                                                                                                                                                                                  >  2:2692931/1‑289 (MQ=255)

           aaTCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACAt                                                                                                                                                                                                                                                                <  1:1136593/288‑1 (MQ=255)

           aaTCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACAt                                                                                                                                                                                                                                                                <  1:567235/288‑1 (MQ=255)

            aTCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCg                                                                                                                                                                                                                                                              >  1:3070719/1‑289 (MQ=255)

             tCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGa                                                                                                                                                                                                                                                             <  1:140380/289‑1 (MQ=255)

             tCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGa                                                                                                                                                                                                                                                             >  1:2122821/1‑289 (MQ=255)

                  cgcgCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTa                                                                                                                                                                                                                                                        <  2:261865/289‑1 (MQ=255)

                      cTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTCGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACACCGATATTACg                                                                                                                                                                                                                                                      >  2:369580/1‑287 (MQ=255)

                       tcttACCTTGATTGACATGATAGA‑CCAGAGCGCGTAAGAAAGGTGGGCGCAGTCGAGTTTCAT‑AATGGCTGGCAGCGGTTGCTAACG‑AGCGACCATACAATTCTCGTCGCGATTCGCAATCATCAAAGACACTCGAT‑ATACGGGGCAAACACCCTACGGGTACACATACTCGATTTTCAGTAGTAATAAATACCGGGATGCCATAACCCGTGGCATCAATTTCATCTAGTTTTCCGAATGTAACCTCGTTGATCTATACAACTATTGCCGCACCACCAACATTACGACt                                                                                                                                                                                                                                                   >  2:1939825/3‑289 (MQ=255)

                       tGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACt                                                                                                                                                                                                                                                   >  1:1317136/1‑289 (MQ=255)

                       tGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGAAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACt                                                                                                                                                                                                                                                   <  2:655037/289‑1 (MQ=255)

                                 attgaCATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCa                                                                                                                                                                                                                                               >  2:2417659/1‑283 (MQ=255)

                                 attgaCATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTGCCGCATGTAACATCGTTGAGCGAGAAACCTATTTCCGCCACATCGATATTACGACTTTCATTAATg                                                                                                                                                                                                                                         >  2:1742329/1‑289 (MQ=255)

                                      cATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATc                                                                                                                                                                                                                                                               >  2:234560/1‑262 (MQ=255)

                                      cATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACt                                                                                                                                                                                                                                                   >  2:515848/1‑274 (MQ=255)

                                      cATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGa                                                                                                                                                                                                                                     <  1:2689777/288‑1 (MQ=255)

                                      cATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGa                                                                                                                                                                                                                                     <  1:1278245/288‑1 (MQ=255)

                                          aTCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACAt                                                                                                                                                                                                                                <  1:1987477/289‑1 (MQ=255)

                                                 cAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATtctc                                                                                                                                                                                                                            >  2:2790489/1‑287 (MQ=255)

                                                    tGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGGAAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAAATACAtttcccctgc                                                                                                                                                                                                                       >  2:494117/1‑281 (MQ=255)

                                                    tGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCa                                                                                                                                                                                                                                               <  1:500736/265‑1 (MQ=255)

                                                     gcgcGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTg                                                                                                                                                                                                                        <  1:2565031/287‑1 (MQ=255)

                                                     gcgcGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTg                                                                                                                                                                                                                        <  1:1595642/287‑1 (MQ=255)

                                                      cgcgGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AAAGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCg                                                                                                                                                                                                                      <  1:1867086/288‑1 (MQ=255)

                                                         ggAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTgg                                                                                                                                                                                                                   <  1:1742329/288‑1 (MQ=255)

                                                              aaaGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTaaa                                                                                                                                                                                                               >  2:46138/1‑287 (MQ=255)

                                                               aaGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTaaaa                                                                                                                                                                                                              <  1:1224654/287‑1 (MQ=255)

                                                                  gTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGt                                                                                                                                                                                                          <  2:1000366/288‑1 (MQ=255)

                                                                   tGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTc                                                                                                                                                                                                         <  1:2740137/288‑1 (MQ=255)

                                                                     ggCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTGAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTAGTGCCGCCACATCGATATGACGACTTGCATTAATGTACATACATTCTCGCTGCGTGGTAAAACAGTCCgg                                                                                                                                                                                                      >  2:1402237/1‑289 (MQ=255)

                                                                     ggCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACt                                                                                                                                                                                                                                                   >  1:429382/1‑244 (MQ=255)

                                                                     ggCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATCACTTCTAGCTGCGGGGTAAAACAgctcgg                                                                                                                                                                                                      >  2:2722747/1‑284 (MQ=255)

                                                                       cgcAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCTATATTTCGACTTTTATTAATTTAGATACATTCTTGCTACCTGGTAAAACAgatctggc                                                                                                                                                                                                    >  2:3238873/1‑282 (MQ=255)

                                                                         cAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCaa                                                                                                                                                                                                  >  1:1170360/1‑289 (MQ=255)

                                                                          aGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCaa                                                                                                                                                                                                  <  2:2479186/288‑1 (MQ=255)

                                                                            ttGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCACGaa                                                                                                                                                                                               >  2:1032969/1‑289 (MQ=255)

                                                                                      t‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCACTTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCg                                                                                                                                                                                     <  1:1025753/289‑1 (MQ=255)

                                                                                      t‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAAcc                                                                                                                                                                                      >  1:326679/1‑288 (MQ=255)

                                                                                              tggcAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAAttt                                                                                                                                                                               <  2:1301109/288‑1 (MQ=255)

                                                                                                        ttCTAACT‑GGCGACCATAAAAGTGTCGTAGCGATTCGCAATTCTCAAAGACAC‑ACGAAATACGGGGAAAATACTATGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAAttttga                                                                                                                                                                     <  2:2770363/288‑4 (MQ=255)

                                                                                                                  gCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACt                                                                                                                                                                                                                                                   <  1:1098190/201‑1 (MQ=255)

                                                                                                                  gCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTg                                                                                                                                                                                                                        >  1:660281/1‑228 (MQ=255)

                                                                                                                  gCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCa                                                                                                                                                            >  1:1351945/1‑288 (MQ=255)

                                                                                                                  gCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCAt                                                                                                                                                           >  2:113264/1‑289 (MQ=255)

                                                                                                                  gCGACCATAAAATTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGA‑TTCATTGAGTTTTCCCCCTTTAACATCGTTTAGCCATAAAACTATTGCCCCCACCTCGATTTTACCACTTTCATTAATGTAGATAAATTTTCCCCTCCTGGTAAAACCGTCCGGGCAACGATCCCTTACCGCCATTTTTTAtttttaactttttcct                                                                                                                                                           >  1:245228/1‑275 (MQ=255)

                                                                                                                            aaTTCTCGTCGCGATTCGCAATTCTCAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTAttt                                                                                                                                                 <  1:1508309/289‑1 (MQ=255)

                                                                                                                            aaTTCTCGGCGCGATTCGCGAGTCTCAAAGGCCC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTAttt                                                                                                                                                 <  1:341969/289‑1 (MQ=255)

                                                                                                                                  cttcgcgattCGCAATTCTGAAAGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGCGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTa                                                                                                                                           <  2:2132289/281‑1 (MQ=255)

                                                                                                                                                      aaaGACAC‑CCGAAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGc                                                                                                                                                                                                    >  2:3087695/1‑212 (MQ=255)

                                                                                                                                                            cacccgaaaTACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCAtt                                                                                                                                                                                                                                             <  1:1893659/159‑1 (MQ=255)

                                                                                                                                                            cacccgaaaTACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCAtt                                                                                                                                                                                                                                             >  2:1893659/8‑166 (MQ=255)

                                                                                                                                                             acccgaaaTACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATg                                                                                                                 >  2:2979205/7‑289 (MQ=255)

                                                                                                                                                               ccgaaaTACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCg                                                                                                                                                                                                                           <  1:2542391/177‑1 (MQ=255)

                                                                                                                                                               ccgaaaTACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCAt                                                                                                                                                           <  1:2933076/241‑1 (MQ=255)

                                                                                                                                                               ccgaaaTACGGGGAAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATgag                                                                                                               >  1:2310807/5‑289 (MQ=255)

                                                                                                                                                                       cGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAatcga                                                                                                        >  1:3208034/1‑288 (MQ=255)

                                                                                                                                                                         gggCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCGTAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCg                                                                                                                                                                                                                                                              >  1:2224916/1‑136 (MQ=255)

                                                                                                                                                                         gggCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTgcc                                                                                                                                                                                                                                                                       <  1:2715985/127‑1 (MQ=255)

                                                                                                                                                                         gggCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCg                                                                                                                                                                                                                                                              <  2:2224916/136‑1 (MQ=255)

                                                                                                                                                                         gggCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAatcgatcg                                                                                                     >  1:401972/1‑289 (MQ=255)

                                                                                                                                                                                tACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGa                                                                                              <  1:2790489/289‑1 (MQ=255)

                                                                                                                                                                                    ctGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGaaaaa                                                                                          >  1:226214/1‑289 (MQ=255)

                                                                                                                                                                                     tGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAACCAGTCCGGGCAAGAATAACTCACCGCAATTTTTAATTTTGAAATTTTTAATCTCTTTATTTTCGGTAATAGCAGGTCATCCCTTTCTCGAATGAGCAATCGATCGTGCCGGaaacaa                                                                                         >  1:1793990/1‑289 (MQ=255)

                                                                                                                                                                                          gTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACAt                                                                                                                                                                                                                                                                >  2:2861291/1‑117 (MQ=255)

                                                                                                                                                                                          gTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACAt                                                                                                                                                                                                                                                                <  1:2861291/117‑1 (MQ=255)

                                                                                                                                                                                                 ttCTTGATTTTCAGTAGCAATGAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTAcc                                                                              >  1:2360477/1‑288 (MQ=255)

                                                                                                                                                                                                 ttCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTc                                                                                                                                                                                                         >  2:901493/1‑165 (MQ=255)

                                                                                                                                                                                                 ttCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTc                                                                                                                                                                                                         <  1:901493/165‑1 (MQ=255)

                                                                                                                                                                                                 ttCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTAccc                                                                             <  2:1351945/289‑1 (MQ=255)

                                                                                                                                                                                                         tttCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGata                                                                     <  2:2510994/289‑1 (MQ=255)

                                                                                                                                                                                                          ttCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGa                                                                                                                                                                                                                                     <  1:310576/128‑1 (MQ=255)

                                                                                                                                                                                                          ttCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGataa                                                                    <  1:2487500/289‑1 (MQ=255)

                                                                                                                                                                                                           tCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGc                                                                                                                                                                                                    >  1:86994/1‑160 (MQ=255)

                                                                                                                                                                                                           tCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGataaa                                                                   >  1:1012629/1‑289 (MQ=255)

                                                                                                                                                                                                            cAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCAGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGataaat                                                                  <  2:3312390/289‑1 (MQ=255)

                                                                                                                                                                                                                            cGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGAtt                                                    >  2:2925030/1‑287 (MQ=255)

                                                                                                                                                                                                                                    cATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAg                                                                                                                                    >  2:729920/1‑199 (MQ=255)

                                                                                                                                                                                                                                    cATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAg                                                                                                                                    <  1:729920/199‑1 (MQ=255)

                                                                                                                                                                                                                                       aaCCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGaa                                       <  1:2416430/289‑1 (MQ=255)

                                                                                                                                                                                                                                         cccGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCa                                                                                                                                                            >  2:1481530/1‑170 (MQ=255)

                                                                                                                                                                                                                                           cGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCa                                   >  2:812154/1‑289 (MQ=255)

                                                                                                                                                                                                                                            atGGCATCATTTTCATGCAGTTTACAGACGGTAACATATTTGGGCAATAAAACTATTGCCGCAACATCGGTATTACTACTTTCATTAATGTGGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCACGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAg                                  <  2:85502/288‑1 (MQ=255)

                                                                                                                                                                                                                                             tGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCg                                                                                                                                                                                                                                                              <  1:77781/68‑1 (MQ=255)

                                                                                                                                                                                                                                             tGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGc                                                                                                                                                                                                    <  2:1186777/126‑1 (MQ=255)

                                                                                                                                                                                                                                             tGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAAttttga                                                                                                                                                                     >  1:1197841/1‑154 (MQ=255)

                                                                                                                                                                                                                                             tGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGa                                                      >  2:1621116/1‑268 (MQ=255)

                                                                                                                                                                                                                                             tGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCCCTTTATTTTAGGTAATAGCAGTTCCTTAATTTCTCGAATGTGCAATCGACCGTGCCGGAAAAATGCAAAGTTACCCATGTGAGAACTAAATCAGGTAGATGGCTTTTTTCAGAATGCAGa                                 >  2:1514425/1‑289 (MQ=255)

                                                                                                                                                                                                                                              ggCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGaa                                       <  2:870595/282‑1 (MQ=255)

                                                                                                                                                                                                                                              ggCATCGATTTCATCGAGGTTTCCCACTGTAACATCGTAGAGCGATAAAACTATTGCCGCCACAGCGATATTACGACTTTCATTAATGTAGATACATTCGCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAAGAAATCAGGTAGATTGCTTTTTTCAGAATGCAGaa                                <  2:2551275/289‑1 (MQ=255)

                                                                                                                                                                                                                                              ggCATCGATTTAATTTAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGACGCCACATGGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGaa                                <  2:3208034/289‑1 (MQ=255)

                                                                                                                                                                                                                                                 aTCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAAc                              <  2:2277103/288‑1 (MQ=255)

                                                                                                                                                                                                                                                 aTCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAAc                              <  2:2087577/288‑1 (MQ=255)

                                                                                                                                                                                                                                                   cGATTTCATCGAGTGTTCCGCATGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCt                           <  1:1473506/289‑1 (MQ=255)

                                                                                                                                                                                                                                                               gTTTTCCTCATTTAACATCGTTGAGCCATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGCTACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAgg                <  2:2233526/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                         tGTAACATCGTTGAGCGATAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTAttt                                                                                                                                                 >  2:1115878/1‑149 (MQ=255)

                                                                                                                                                                                                                                                                            aaCATAGTTGAGCGATAAAACTAGTGACGCCACATCGCTATGACGGATTTCATTAATTTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCAATAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGATGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACa  <  2:1818376/289‑1 (MQ=255)

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ATGACCAGGGCAATCAAACGCGCTGTTACCTTGATTGACATAATCGA‑CCAGTGCGCGGAAGAAAGGTGGGCGCAGTTGAGTTTCAT‑AATGGCTGGCAGCGGTTTCTAACT‑GGCGACCATAAAATTCTCGTCGGCTTTCGCAATTCTCAAAGACAC‑CGCTAATACGGGGCAAATACTCTGCGGGTACACGTTCTTGATTTTCAGTAGCAATAAATACCGGGATGCCATAACCCGTGGCATCGATTTCATCGAGTTTTCCGCATGTAACATCGTTGAGGCTTAAAACTATTGCCGCCACATCGATATTACGACTTTCATTAATGTAGATACATTCTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTACTCATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACA  >  CP042583/592500‑593052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A