Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	642,792	3 bp→TCA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	642,792	0	A	T	99.3%	965.6 / NA	409	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (2/1); new base T (209/194); total (214/195)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	642,793	0	G	C	99.5%	971.0 / NA	409	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (1/1); new base C (213/194); total (214/195)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	642,794	0	T	A	99.3%	977.5 / NA	409	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (210/195); minor base G (3/0); total (214/195)
Fisher's exact test for biased strand distribution p-value = 2.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 409 total aligned reads displayed.

GCACCAATCAGTAGTGTCGGCAGTGGCAGCGTCGAAGACCGCGTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAAAGTACCAGCGGCGATCAAAGCGGTGCGGCG‑GCAAGTACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATAGTACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATGCGGCGTACTATTTTGCTAGCGTAGTGAAAAACTATCCGAAG  >  CP042583/642513‑643067

|||

gCACCAATCAGTAGTGTCGGCTCAGGCTCGGTCGAAGACCGCGTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAacgacg                                                                                                                                                                                                                                                                             >  1:1619851/1‑288 (MQ=255)

  aCCAATCAGTAGTGTCGGCTCAGGCTCGGTCGAAGACCGCGTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGcc                                                                                                                                                                                                                                                                           <  2:1619851/288‑1 (MQ=255)

        cAGTAGTGTCGGCTCAGGCTCGGTCGAAGACCGCGTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCt                                                                                                                                                                                                                                                                    <  1:1131512/289‑1 (MQ=255)

        cAGTAGTGTCGGCTCAGGCTCGGTCGAAGACCGCGTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCt                                                                                                                                                                                                                                                                    <  1:1891274/289‑1 (MQ=255)

                tcggctcaggctcggTCGAAGACCGCGTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTgg                                                                                                                                                                                                                                                            >  1:2274316/15‑289 (MQ=255)

                     tcaggctcggTCGAAGACCGCGTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACt                                                                                                                                                                                                                                                        >  1:1591832/10‑288 (MQ=255)

                                         cgTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTg                                                                                                                                                                                                                                   >  1:2172580/1‑289 (MQ=255)

                                         cgTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTg                                                                                                                                                                                                                                   >  1:1185563/1‑289 (MQ=255)

                                         cgTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTg                                                                                                                                                                                                                                   >  1:476253/1‑289 (MQ=255)

                                         cgTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTg                                                                                                                                                                                                                                   >  1:2822663/1‑289 (MQ=255)

                                         cgTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTg                                                                                                                                                                                                                                   >  1:1759053/1‑289 (MQ=255)

                                         cgTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑CCATCGACGACGCCGACAGCGGACGCTGGTACTGGGAATGCGGGCGCGCCGCTg                                                                                                                                                                                                                                   >  2:1680110/1‑289 (MQ=255)

                                            cACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGc                                                                                                                                                                                                                                                      >  1:1822073/1‑267 (MQ=255)

                                             aCTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGgcg                                                                                                                                                                                                                                           <  1:3186070/277‑1 (MQ=255)

                                                   cTTGAGCGTATTTCTACTGCTCACAGCCAGCTTGTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGCGGAGCGGCAAACGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCCGCGATCAAAGCGGTGCGGCG‑GCAACAACGACGCAGGACGCTGAGGCGGGAACTGCAAATAGTGGCGCGCCGGTCAAAAGCGGTa                                                                                                                                                                                                                         >  2:529720/1‑289 (MQ=255)

                                                      gAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATg                                                                                                                                                                                                                      >  1:1716915/1‑289 (MQ=255)

                                                      gAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCAATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAg                                                                                                                                                                                                                                                                      <  2:429551/241‑1 (MQ=255)

                                                         cGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCt                                                                                                                                                                                                                                                                    <  2:2524100/240‑1 (MQ=255)

                                                          gTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCaa                                                                                                                                                                                                                   <  1:2677857/288‑1 (MQ=255)

                                                             tttCTAATGCTCACAGCCATCTTTTAACCCAACTCCATCAACAAGTTGCTGATAATCAATCCGATATTGAATCGCTGCGTGGTCAGATTCAGGACAATCAGTATCAACTGAATCAGGTCGTGCAGCGACAAGAGCGGTTTCTGTGGCAGAACGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCGATCGACCAACGGCGGTCAAACCGGTGCGGCGTGCTCGGA‑GACGCCCAAACGTGTGGCAGGTGATGCTAATGCTGACACGCAGGTGAACAGCGGTAAtctaaata                                                                                                                                                                                                                >  2:2372569/1‑281 (MQ=255)

                                                             tttCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCacacac                                                                                                                                                                                                               >  1:2541363/1‑289 (MQ=255)

                                                              ttCTAATGCTCACAGCCAGCTTTTCACCCAAATCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGGGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACg                                                                                                                                                                                                              <  2:827583/289‑1 (MQ=255)

                                                              ttCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACg                                                                                                                                                                                                              <  2:3045462/289‑1 (MQ=255)

                                                                        cacaGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAg                                                                                                                                                                                                                                                                      >  1:3088204/1‑223 (MQ=255)

                                                                        cacaGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCt                                                                                                                                                                                                                                                                    <  2:2823198/225‑1 (MQ=255)

                                                                        cacaGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACg                                                                                                                                                                                                              >  1:2748810/1‑279 (MQ=255)

                                                                        cacaGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAAt                                                                                                                                                                                                     >  1:1046174/1‑288 (MQ=255)

                                                                                gcTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCg                                                                                                                                                                                                                                                                          <  1:3266779/211‑1 (MQ=255)

                                                                                gcTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGCGCGGCG‑GCATCAACGACGCCg                                                                                                                                                                                                                                                                          >  2:3266779/1‑211 (MQ=255)

                                                                                 cTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAACGCAAACACGGATTACAATGCAGCCAtcg                                                                                                                                                                                           >  2:693347/1‑287 (MQ=255)

                                                                                    ttgaCCCACCTCCAGCAACAACTGTCTGATAATCAAGCCGATATTGGTTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTgcgc                                                                                                                                                                                        <  2:3167498/286‑1 (MQ=255)

                                                                                     tAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCA‑‑GGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAg                                                                                                                                                                                                                              <  2:715449/248‑1 (MQ=255)

                                                                                         ccAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTg                                                                                                                                                                                   <  2:143747/289‑1 (MQ=255)

                                                                                         ccAACTCCAGCAACAACTTTCAGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTACAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTg                                                                                                                                                                                   <  2:355199/289‑1 (MQ=255)

                                                                                          cAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGc                                                                                                                                                                                  <  1:503792/289‑1 (MQ=255)

                                                                                           aaCTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGACTGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCa                                                                                                                                                                                 >  2:3113595/1‑289 (MQ=255)

                                                                                           aaCTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCgg                                                                                                                                                                                                                                     <  1:1279842/237‑1 (MQ=255)

                                                                                           aaCTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACg                                                                                                                                                                                                              <  2:1291139/260‑1 (MQ=255)

                                                                                           aaCTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCa                                                                                                                                                                                 >  1:665229/1‑289 (MQ=255)

                                                                                           aaCTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATAACAATGCAGCGATTGCGCTgggcca                                                                                                                                                                                 >  2:503792/1‑285 (MQ=255)

                                                                                            aCTCAAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAg                                                                                                                                                                                >  1:392633/1‑289 (MQ=255)

                                                                                                        acTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAaca                                                                                                                                                                                                                <  1:1427083/245‑1 (MQ=255)

                                                                                                                    tcaatcCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCa                                                                                                                                                        <  2:2331551/289‑1 (MQ=255)

                                                                                                                              atTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGa                                                                                                                                                                                                                                                                         <  2:2196402/166‑1 (MQ=255)

                                                                                                                                  aTTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGc                                                                                                                                                                                                                                                               <  1:851273/172‑1 (MQ=255)

                                                                                                                                  aTTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGTTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAAACCCGCCAGGATGACGCAATGGAGGCAATTCa                                                                                                                                          >  2:386762/1‑289 (MQ=255)

                                                                                                                                  aTTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTa                                                                                                                                                                                                         >  1:2363325/1‑226 (MQ=255)

                                                                                                                                       cTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATg                                                                                                                                                                                                                                                                <  1:1070676/166‑1 (MQ=255)

                                                                                                                                       cTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGaaa                                                                                                                                                                                                                                <  2:2427737/198‑1 (MQ=255)

                                                                                                                                       cTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGaaa                                                                                                                                                                                                                                >  1:2427737/1‑198 (MQ=255)

                                                                                                                                       cTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCaa                                                                                                                                                                                                                   >  1:2725030/1‑211 (MQ=255)

                                                                                                                                        tGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTgcg                                                                                                                                                                                         >  1:1322623/1‑236 (MQ=255)

                                                                                                                                         gCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTtc                                                                                                                                   >  2:1071130/1‑289 (MQ=255)

                                                                                                                                               tCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCaaa                                                                                                                             >  1:354585/1‑289 (MQ=255)

                                                                                                                                                   aTTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTg                                                                                                                                                                                   >  1:1945300/1‑231 (MQ=255)

                                                                                                                                                    ttCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCAGCCAGGATGACGCAATGGTGGCATCTCAGAATTTAATCAAAAAtt                                                                                                                         >  2:3150008/1‑288 (MQ=255)

                                                                                                                                                       aGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTAccc                                                                                                                     <  2:1046174/289‑1 (MQ=255)

                                                                                                                                                             aTCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAg                                                                                                                                                                                                 >  2:2667262/1‑207 (MQ=255)

                                                                                                                                                                            aTCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAg                                                                                                                                                                                                                                                                      >  2:2476491/1‑123 (MQ=255)

                                                                                                                                                                            aTCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGa                                                                                                                                                                                                            <  2:609288/181‑1 (MQ=255)

                                                                                                                                                                                ggTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGcc                                                                                            >  2:1485176/1‑289 (MQ=255)

                                                                                                                                                                                ggTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGcc                                                                                            >  1:58914/1‑289 (MQ=255)

                                                                                                                                                                                 gTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAacac                                                                                                                                                                                                               >  2:1147304/1‑173 (MQ=255)

                                                                                                                                                                                  tCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAAt                                                                                                                                                                         >  1:2920046/1‑210 (MQ=255)

                                                                                                                                                                                          cGGCAAAAGCAGAGCCTGTGGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGACGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTgg                                                                                   <  2:1966107/288‑1 (MQ=255)

                                                                                                                                                                                          cGGAAAAAGCAGATCCTGTTGCAGATGGACAGCCTCGGCAGCGGTGGGGCAGCGGCGCAATCAACCAGCGGGGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTgg                                                                                   <  2:2575377/288‑1 (MQ=255)

                                                                                                                                                                                           ggCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGc                                                                                  <  1:3150008/288‑1 (MQ=255)

                                                                                                                                                                                             cAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTgg                                                                               <  2:2896463/289‑1 (MQ=255)

                                                                                                                                                                                              caaaGCAGAACCTGGTGCAGATCGAGAGGCTACGGAGCGGTGTCGAAGCGGCGCGATAAACCAGCGGCGAGCAAGGCGGTGCGGCG‑GCTACAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGGAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTgg                                                                               <  2:1410559/287‑1 (MQ=255)

                                                                                                                                                                                               aaggccagtCCTGTTGCAGATCGGAAGCCTCAGGAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGt                                                                             <  2:2055349/281‑1 (MQ=255)

                                                                                                                                                                                                    aGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGt                                                                         <  1:1479251/288‑1 (MQ=255)

                                                                                                                                                                                                       tCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTaa                                                                      >  1:701754/1‑288 (MQ=255)

                                                                                                                                                                                                       tCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGAGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTa                                                                       <  2:2098999/287‑1 (MQ=255)

                                                                                                                                                                                                       tCCGGTTGGCGAGCGACAGCTCCAGCAGCGTGGGGGCAGCGGGGGAATCAACCAGCGGGGATCAAACGGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGATGGTTATGAGAAAGCGGGCGCGCCGGTGACAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCAGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTa                                                                       <  2:2742020/287‑1 (MQ=255)

                                                                                                                                                                                                           gTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCACGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTac                                                                 >  2:1368664/1‑289 (MQ=255)

                                                                                                                                                                                                              ggaGATTGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCCATCAACCCGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTaccac                                                              <  2:1717211/287‑1 (MQ=255)

                                                                                                                                                                                                              gCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCCACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTacaac                                                              <  2:1835390/289‑1 (MQ=255)

                                                                                                                                                                                                              gCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTacaac                                                              <  1:765155/289‑1 (MQ=255)

                                                                                                                                                                                                                  aTCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAaca                                                                                                                                                                                                                >  2:88184/1‑139 (MQ=255)

                                                                                                                                                                                                                  aTCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAaca                                                                                                                                                                                                                <  1:88184/139‑1 (MQ=255)

                                                                                                                                                                                                                    cGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGt                                                                                                                                                                                                                          >  2:859386/1‑127 (MQ=255)

                                                                                                                                                                                                                              agcagcGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCt                                                                                                                                                                                                                                                                    >  1:20248/1‑75 (MQ=255)

                                                                                                                                                                                                                                  gcGGTGGGGCAGCGGGGCAATCAACCAGCGGCGGTCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGatgatg                                           <  2:2780486/288‑1 (MQ=255)

                                                                                                                                                                                                                                   cGGTGGTGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATgcg                                         >  1:2475730/1‑289 (MQ=255)

                                                                                                                                                                                                                                    ggtggtGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAAtggtgg                                                                                                                                                 <  1:977070/184‑1 (MQ=255)

                                                                                                                                                                                                                                    ggtggtGCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATgcg                                         >  1:298641/1‑288 (MQ=255)

                                                                                                                                                                                                                                     gtggtgCAGCGGCGCAATCAACCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTAt                                                                                                                                                                                             >  1:2075227/1‑139 (MQ=255)

                                                                                                                                                                                                                                                gcgcaatcaaCCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTTTTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATGCGGCGTACTAtttt                             >  1:1667977/10‑288 (MQ=255)

                                                                                                                                                                                                                                                   caatcaaCCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTtcatc                                                                                                                                >  2:2140359/7‑186 (MQ=255)

                                                                                                                                                                                                                                                   caatcaaCCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTtcatc                                                                                                                                <  1:2140359/180‑1 (MQ=255)

                                                                                                                                                                                                                                                   caatcaaCCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGc                                                                                             <  2:792296/215‑1 (MQ=255)

                                                                                                                                                                                                                                                   caatcaaCCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATGCGGCGTACTATTTTGCt                          >  1:1906483/7‑288 (MQ=255)

                                                                                                                                                                                                                                                    aatcaaCCAGCGGCGATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATGCGGCGTACTATTTTGCtt                         <  1:782439/283‑2 (MQ=255)

                                                                                                                                                                                                                                                                gcgATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTAc                                                                                                        <  1:1012653/197‑1 (MQ=255)

                                                                                                                                                                                                                                                                 cgATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATGCGGCGTACTATTTTGCTTCGGTAGTGaaaaa            <  1:2788345/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                  gATCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATGCGGCGTACTATTTTGCTTCGGTAGTGAAAAACt          >  1:2498690/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                   aTCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATGCGGCGTACTATTTTGCTTCGGTAGTGAAAAACTa         >  1:258811/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                   aTCAAAGCGGTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATGCGGCGTACTATTTTGCTTCGGTAGTGAAAAACTa         >  2:2880555/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                           ggTGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGt                                                                         <  2:1190302/217‑1 (MQ=255)

                                                                                                                                                                                                                                                                             tGCGGCG‑GCATCAACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATTCAACTTACCTGCCAAACGCCAATTATTGGCTgg                                                                               <  2:1821551/209‑1 (MQ=255)

|||

GCACCAATCAGTAGTGTCGGCAGTGGCAGCGTCGAAGACCGCGTCACTCAACTTGAGCGTATTTCTAATGCTCACAGCCAGCTTTTAACCCAACTCCAGCAACAACTTTCTGATAATCAATCCGATATTGATTCCCTGCGTGGTCAGATTCAGGAAAATCAGTATCAACTGAATCAGGTCGTGGAGCGGCAAAAGCAGATCCTGTTGCAGATCGACAGCCTCAGCAGCGGTGGTGCAGCGGCGCAAAGTACCAGCGGCGATCAAAGCGGTGCGGCG‑GCAAGTACGACGCCGACAGCTGATGCTGGTACTGCGAATGCTGGCGCGCCGGTGAAAAGCGGTAATGCAAACACGGATTACAATGCAGCTATTGCGCTGGTGCAGGATAAATCCCGCCAGGATGACGCAATGGTGGCATTTCAGAATTTCATCAAAAATTACCCTGATAGTACTTACCTGCCAAACGCCAATTATTGGCTGGGTCAGTTAAACTACAACAAGGGTAAAAAAGATGATGCGGCGTACTATTTTGCTAGCGTAGTGAAAAACTATCCGAAG  >  CP042583/642513‑643067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A