Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F210 I1 R1 4928 385.2 6658600 97.5% 6492135 231.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 656,512 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583656,5120GC99.7% 760.1 / ‑4.6 319intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (161/157);  minor base T (1/0);  total (162/157)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.43e-01
*CP042583656,5130CG99.4% 755.8 / ‑4.2 319intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (160/155);  minor base A (1/1);  total (162/157)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01
*CP042583656,5140TA99.7% 762.7 / NA 319intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (162/155);  minor base G (0/1);  total (162/157)
Fisher's exact test for biased strand distribution p-value = 4.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 319 total aligned reads displayed.

AGGGCGGTAATACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCGCTTTTCCCGCTTCCATTGCTACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAAGCTACT‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACTGTGGCGCA  >  CP042583/656240‑656791
                                                                                                                                                                                                                                                                                |||                                                                                                                                                                                                                                                                                      
aggGCGGTAATACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGcc                                                                                                                                                                                                                                                                           <  2:2006170/288‑1 (MQ=255)
    cGGTAATACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACt                                                                                                                                                                                                                                                                      >  1:1052657/1‑289 (MQ=255)
    cGGTAATACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACt                                                                                                                                                                                                                                                                      >  1:387155/1‑289 (MQ=255)
        aaTACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATc                                                                                                                                                                                                                                                                   >  1:2249014/1‑288 (MQ=255)
          tcacGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCATTTCCTTCGTCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCAcc                                                                                                                                                                                                                                                                <  2:566869/286‑1 (MQ=255)
            cccaaCTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGCGCATAGCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACATGCGATGTGTGAAAACTGGCTTTGCCGTTCTCCTGTCAACATCGGCAGTTCCCCCGCCAGAGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGACCCTACAAACATCCAATCATCAccc                                                                                                                                                                                                                                                               >  2:130076/4‑288 (MQ=255)
               aaCTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGt                                                                                                                                                                                                                                                           >  1:1085641/1‑289 (MQ=255)
                       cgcCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCCCGGGCCAGGGCCGAGTTCCCGCTGCCATTCGAACCGCCAAACGCCCAACTAACACACGCCTTTAACGt                                                                                                                                                                                                                                                    >  2:725512/1‑288 (MQ=255)
                                       cgcgGTGCATCCTTTACTTCTTCCTGAAGGAGCTCGGCCGTAGTGCGTCCGGGGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCa                                                                                                                                                                                                                                   <  2:1127813/289‑1 (MQ=255)
                                                      aCTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTCCCATTCGAACCGACACACGCCCAACTATCACCCGTTTTTCACGTTAGCCAAGGCAATTGCCGCGTTTTTGTGTc                                                                                                                                                                                                                      >  2:284123/1‑287 (MQ=255)
                                                            tCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGa                                                                                                                                                                                                               >  2:769503/1‑288 (MQ=255)
                                                            tCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGC‑CGATTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACg                                                                                                                                                                                                             >  1:908508/1‑289 (MQ=255)
                                                                      tctcAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAg                                                                                                                                                                                                                >  2:3305941/1‑277 (MQ=255)
                                                                          aGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGc                                                                                                                                                                                                >  1:1383852/1‑289 (MQ=255)
                                                                           gCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCa                                                                                                                                                                                               >  1:985011/1‑289 (MQ=255)
                                                                                   gCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGc                                                                                                                                                                                       <  1:1588778/289‑1 (MQ=255)
                                                                                      tCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAACAGCGGAAGTTACCCCGCCAGCGCGCGGGCCCGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTCTCACCCGAGTTCAATGTTAGCTGAGGCAATCGCAGCGTTTCTTTGTCCTTAAGTCGCAAGCTTCCTGCCAAACTTTGCaac                                                                                                                                                                                    >  2:1528110/1‑288 (MQ=255)
                                                                                      tCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGcc                                                                                                                                                                                                                                                                           <  1:2308347/202‑1 (MQ=255)
                                                                                      tCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTCAGACGAAACGTGCCTTGCAACATTTTCaa                                                                                                                                                                                     >  2:856045/1‑288 (MQ=255)
                                                                                      tCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACACGCGTTTAACGTTAGCTGAGGCAATTCCAGCGTTTTTTTGTCGCTAAGACGAAACGGGCCTTGCAAAATTTGCaac                                                                                                                                                                                    >  2:2827494/1‑288 (MQ=255)
                                                                                        cGGTGCCATCTTCGCCCGGGCCGGGCTTATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCaacga                                                                                                                                                                                  <  2:1228010/289‑4 (MQ=255)
                                                                                                tCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCaacgatgacattt                                                                                                                                                                          >  1:1228010/1‑278 (MQ=255)
                                                                                                 cTTCGCCAGGGCCGGGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCaacgatgacatttt                                                                                                                                                                         <  1:1691010/289‑13 (MQ=255)
                                                                                                          ggCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATccc                                                                                                                                                                 >  1:1645295/1‑287 (MQ=255)
                                                                                                               aGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAGGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCa                                                                                                                                                                                                                                   <  2:3233220/217‑1 (MQ=255)
                                                                                                               aGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAGGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCa                                                                                                                                                                                                                                   >  1:3233220/1‑217 (MQ=255)
                                                                                                               aGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAA‑CGATTACATTTTATATCCCAAttttt                                                                                                                                                          >  2:2501308/1‑287 (MQ=255)
                                                                                                                   tatCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAg                                                                                                                                                      <  1:769503/289‑1 (MQ=255)
                                                                                                                   tatCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAg                                                                                                                                                      <  1:2689969/289‑1 (MQ=255)
                                                                                                                         tgtTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCTATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAg                                                                                                                                                                                                                                  >  2:2602966/1‑208 (MQ=255)
                                                                                                                         tgtTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCAcc                                                                                                                                                                                                                                                                >  2:609054/1‑178 (MQ=255)
                                                                                                                         tgtTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATccc                                                                                                                                                                 >  1:1448684/1‑272 (MQ=255)
                                                                                                                         tgtTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATccc                                                                                                                                                                 <  2:1448684/272‑1 (MQ=255)
                                                                                                                             aTTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATccc                                                                                                                                                                 >  2:2589173/1‑268 (MQ=255)
                                                                                                                              ttCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTg                                                                                                                                                                                                      >  1:2883559/1‑231 (MQ=255)
                                                                                                                              ttCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGAc                                                                                                                                           <  1:2957376/289‑1 (MQ=255)
                                                                                                                              ttCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGAc                                                                                                                                           <  2:1192082/289‑1 (MQ=255)
                                                                                                                              ttCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACCATGA‑CATTTTATATCCCACTTTGTGACGCGATTatttac                                                                                                                                           >  2:1938691/1‑284 (MQ=255)
                                                                                                                                   cTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGccc                                                                                                                                                                                                                                                                          <  1:3126276/158‑1 (MQ=255)
                                                                                                                                   cTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCCATTGCAGCGTTTTTGTGTCGCTAAGACGACACGTGCCTTGCAAAATTTGCCA‑CGATTACATTTTATATCCTCCTTTGTGCAGCGATTACTGACAGGGa                                                                                                                                      >  2:116558/1‑289 (MQ=255)
                                                                                                                                   cTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCt                                                                                                                                                                                                                   >  2:231130/1‑213 (MQ=255)
                                                                                                                                   cTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGAc                                                                                                                                           <  1:1602044/284‑1 (MQ=255)
                                                                                                                                   cTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGAc                                                                                                                                           >  2:1602044/1‑284 (MQ=255)
                                                                                                                                    tGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGAt                                                                                                                                     <  1:2767269/289‑1 (MQ=255)
                                                                                                                                      ccATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCACACTTTGTGCAGCGATTACTGACAGGGATAc                                                                                                                                   >  2:158628/1‑289 (MQ=255)
                                                                                                                                       cATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACg                                                                                                                                  <  2:1023558/289‑1 (MQ=255)
                                                                                                                                                cTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGcc                                                                                                                                                                                                                                                                           >  1:2343230/1‑144 (MQ=255)
                                                                                                                                                          tttGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACt                                                                                                                                                              >  1:1927580/1‑242 (MQ=255)
                                                                                                                                                             gCAATTGCTCGGAGGGGAGAGGAGGGGTGTCGGAAACCTGGCTTTGCCGGTCACCTTTCCAAAGCGGAAGTTCCCCCGCCCGCGCGCGGGCCAGGGCCGATTTCCTGCTTCCAGTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                            <  2:1823674/289‑1 (MQ=255)
                                                                                                                                                             gCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                            <  1:1142775/289‑1 (MQ=255)
                                                                                                                                                             gCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                            <  1:2473899/289‑1 (MQ=255)
                                                                                                                                                             gCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                            <  1:450130/289‑1 (MQ=255)
                                                                                                                                                             gCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                            <  1:349158/289‑1 (MQ=255)
                                                                                                                                                             gCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                            <  2:2958378/289‑1 (MQ=255)
                                                                                                                                                                aTTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGAc                                                                                                                                           >  1:155610/1‑255 (MQ=255)
                                                                                                                                                                       gAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGca                                                                                                  <  1:1320503/289‑1 (MQ=255)
                                                                                                                                                                         aGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGca                                                                                                  <  2:312090/287‑1 (MQ=255)
                                                                                                                                                                            agagaCGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGc                                                                                              <  1:1182015/288‑1 (MQ=255)
                                                                                                                                                                              ggaCGGGGGATGTGGGAAAACTGGTTTTGCCGTGTACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGATTCCATTCGAACCGACAAACGCCCAACTATCACCCGGGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGt                                                                                            <  2:802670/287‑1 (MQ=255)
                                                                                                                                                                                   aGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCaacgatgacatt                                                                                                                                                                           <  2:2430271/205‑11 (MQ=255)
                                                                                                                                                                                   aGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCaacgatgacatt                                                                                                                                                                           >  1:2997850/1‑195 (MQ=255)
                                                                                                                                                                                   aGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGAt                                                                                                                                     >  1:695025/1‑242 (MQ=255)
                                                                                                                                                                                   aGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGAt                                                                                                                                     <  2:695025/242‑1 (MQ=255)
                                                                                                                                                                                   aGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                            >  2:462646/1‑267 (MQ=255)
                                                                                                                                                                                     tGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCaacga                                                                                                                                                                                  >  2:655786/1‑193 (MQ=255)
                                                                                                                                                                                     tGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCaacga                                                                                                                                                                                  <  1:655786/196‑4 (MQ=255)
                                                                                                                                                                                               aaaCTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGt                                                                           <  1:1028635/288‑1 (MQ=255)
                                                                                                                                                                                               aaaCTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTc                                                                          <  2:2944971/289‑1 (MQ=255)
                                                                                                                                                                                                 aCTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCg                                                                         >  2:2524790/1‑288 (MQ=255)
                                                                                                                                                                                                    ggCTTTGCCGTTCACCTTTCCAAAGCGGAAGTCCCCCGGCCGGCGCGCGTGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCa                                                                      <  2:1752590/288‑1 (MQ=255)
                                                                                                                                                                                                    ggCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCaacgatgac                                                                                                                                                                              >  1:19890/1‑178 (MQ=255)
                                                                                                                                                                                                                cACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCaacgatg                                                                                                                                                                                >  1:2650838/1‑166 (MQ=255)
                                                                                                                                                                                                                  ccTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGCGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTg                                                       <  1:1464820/289‑1 (MQ=255)
                                                                                                                                                                                                                           aGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGt                                              <  1:2092962/289‑1 (MQ=255)
                                                                                                                                                                                                                             cGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAg                                                                                                                                                      >  2:2986251/1‑183 (MQ=255)
                                                                                                                                                                                                                             cGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTCTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTCTATCCCACTTTGTGCAGCGATTACTGACATGGATACGTGTTTAATAACAAATTGTCAACACGCTTAGCCCCGCGTGGCCCTAAACCCCTCGTCGCCATTAAAGTAGGCCGTGACCTTccgc                                              >  2:3083296/1‑284 (MQ=255)
                                                                                                                                                                                                                              ggAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCa                                                                      >  2:2666843/1‑262 (MQ=255)
                                                                                                                                                                                                                               gAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACt                                                                                                                                              <  2:3126889/189‑1 (MQ=255)
                                                                                                                                                                                                                               gAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACAtt                                                  <  1:2389412/281‑1 (MQ=255)
                                                                                                                                                                                                                                           ccAGCGCGCGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAg                              <  2:1645295/289‑1 (MQ=255)
                                                                                                                                                                                                                                              gcgcgcGGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTc                            >  1:630731/1‑288 (MQ=255)
                                                                                                                                                                                                                                               cgcgcgGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACgtgt                                                                                                                               >  2:1465633/1‑188 (MQ=255)
                                                                                                                                                                                                                                               cgcgcgGGCCAGGGCCGATTTCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCa                                                                      <  1:3288115/245‑1 (MQ=255)
                                                                                                                                                                                                                                                              cgatttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCa            <  1:2524790/285‑1 (MQ=255)
                                                                                                                                                                                                                                                               gatttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACt          <  1:1003521/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCGATTGCAGCGTTTTTGTGTCg                                                                                                                                                                                                                     <  1:2568419/85‑1 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCa                                                                                                                                                                                                                                   <  1:310044/71‑1 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGa                                                                                                                                                                                                               >  2:357851/2‑92 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAggg                                                                                                                                       >  1:592900/2‑163 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAac                                                                                                            <  2:2241246/189‑1 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCa                                                                      >  2:404891/2‑228 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTcc                                            <  2:2355652/253‑1 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAaga                                  <  1:2062067/263‑1 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGc             >  1:3195223/2‑285 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGc             >  2:2014567/2‑285 (MQ=255)
                                                                                                                                                                                                                                                                atttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGc             >  2:1075091/2‑285 (MQ=255)
                                                                                                                                                                                                                                                                 tttCCCGCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCTCTTCATTTACCGGCACtgt        <  1:2117767/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                       gCTTCCATTCGCACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACTGTGGCGca  <  1:176619/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                       gCTTCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACTGTGGCGca  <  2:1052657/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                         ttCCATTCGAACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAACGATGA‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAAc                                                                                                                       <  2:2109786/170‑1 (MQ=255)
                                                                                                                                                                                                                                                                                |||                                                                                                                                                                                                                                                                                      
AGGGCGGTAATACCGAACTGCTGCGCCAGTTGCATGCAACGCGGTGCATCCTTTACTTCATCCTGAATGATCTCAGCCGTAGTGCGTCCGGTGTCATCTTCGCCAGGGCCGAGCATATCGGTGTTATTCCGCTGCCATTCGTCGCTGACGAGTTTTTGCAATTGCTCGAAGGAGAGACGAGTGATGTGGGAAAACTGGCTTTGCCGTTCACCTTTCAAAAGCGGAAGTTCCCCCGCCAGCGCGCGGGCCAGGGCGCTTTTCCCGCTTCCATTGCTACCGACAAACGCCCAACTATCACCCGCGTTTAACGTTAGCTGAGGCAATTGCAGCGTTTTTGTGTCGCTAAGACGAAACGTGCCTTGCAAAATTTGCAAGCTACT‑CATTTTATATCCCACTTTGTGCAGCGATTACTGACAGGGATACGTGTTTCATAACAAATTGTCAACACGCTTAGCACAGCGTGGCGATAATCACGCTGTCGGCATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACTGTGGCGCA  >  CP042583/656240‑656791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A