Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F210 I1 R1 4928 385.2 6658600 97.5% 6492135 231.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 679,395 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583679,3950GC99.7% 693.2 / NA 293intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (136/156);  minor base A (1/0);  total (137/156)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583679,3960CG100.0% 697.1 / NA 293intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (137/156);  total (137/156)
*CP042583679,3970TA99.7% 700.0 / NA 293intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base A (136/156);  total (137/156)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 293 total aligned reads displayed.

ATGGCTTCCAGAGGCCGCACGCTAAGGTGATCCAGCGCCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCACTACGGCGAATACGCCCCGTGCTGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGAGCTAAGACTACTGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAG  >  CP042583/679138‑679667
                                                                                                                                                                                                                                                                 |||                                                                                                                                                                                                                                                                              
 ttgcgtgcAGAGGCAGCACGCTAAGGTGATCCATCGCCTTTAACATCAAGTGTCCGAGATTATGAGCGGCAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGGTGAGGCAGTTGCGGATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGGCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCAt                                                                                                                                                                                                                                                   <  2:2606015/281‑1 (MQ=255)
     ttCCAGAGGCCGCACGCTAAGGTGATCCAGCGCCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCt                                                                                                                                                                                                                                              <  1:2160375/289‑1 (MQ=255)
                     cTAAGGTGATCCAGCGCCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAACCGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCAAGACCATGCCCTCCGCCGAACGCAACGa                                                                                                                                                                                                                              >  2:2530558/1‑289 (MQ=255)
                       aagggcttCCACCGCCTTTAACTACAAGTTTACGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGaca                                                                                                                                                                                                                            <  2:2923879/282‑1 (MQ=255)
                       aaGGGGATCCAGCGCCTTTAAAATCAGGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGaca                                                                                                                                                                                                                            <  2:3260783/289‑1 (MQ=255)
                              tCCAGCGCCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTcc                                                                                                                                                                                                                                                     >  1:1931231/1‑257 (MQ=255)
                              tCCAGCGCCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCaa                                                                                                                                                                                                                     >  1:1042738/1‑289 (MQ=255)
                              tCCAGCGCCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCaa                                                                                                                                                                                                                     >  1:2414422/1‑289 (MQ=255)
                              tCCAGCGCCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCaa                                                                                                                                                                                                                     >  1:807559/1‑289 (MQ=255)
                              tCCAGCGCCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCaa                                                                                                                                                                                                                     >  1:1330704/1‑289 (MQ=255)
                                    gcCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCga                                                                                                                                                                                                                                       >  2:597164/1‑265 (MQ=255)
                                    gcCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATca                                                                                                                                                                                                                >  1:1016349/1‑288 (MQ=255)
                                    gcCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTAGTGGGGACGAAACCCGTTAAACGAGCACCCACACCCGTACGCGATGAGAGCACCCGACCCAGTCCAAGCCCTCCGCCGCGAGCAACGaccacaccaaaaaca                                                                                                                                                                                                                >  2:1180927/1‑275 (MQ=255)
                                     ccTTTACCATCAAGTTTCCAGGATTATGCCCGGAAAGTTCGCCATTGCCACAAAAACGGTATTAAAACAGCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc                                                                                                                                                                                                              <  2:1270395/289‑1 (MQ=255)
                                     ccTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc                                                                                                                                                                                                              <  1:1255615/289‑1 (MQ=255)
                                     ccTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc                                                                                                                                                                                                              <  1:39495/289‑1 (MQ=255)
                                      cTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc                                                                                                                                                                                                              <  1:2927431/288‑1 (MQ=255)
                                      cTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc                                                                                                                                                                                                              <  1:1845739/288‑1 (MQ=255)
                                        ttAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCCATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTTGTGACGATACCCGTTAAACGAGAACCCAAAGACGAACGGAATGAGAGAACGCGTCCCAGTCCATGCCCCTCGCCGACAGCAACGACCCGATCAAGAAcagcca                                                                                                                                                                                                            >  2:2697391/1‑288 (MQ=255)
                                        ttAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagcca                                                                                                                                                                                                            >  1:3155898/1‑288 (MQ=255)
                                          aaCATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCg                                                                                                                                                                                                         <  1:3073401/289‑1 (MQ=255)
                                          aaCATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCg                                                                                                                                                                                                         <  2:160322/289‑1 (MQ=255)
                                                            atcagACCCGAAAATTCGCCAGTGCCCCACAAAAAGTATTCAACAATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGt                                                                                                                                                                                       <  2:1346204/285‑1 (MQ=255)
                                                                      aaaGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTACACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGAGCAAGACCAGCCAGCGTACGATTCCGCATATAGTTCCCGGGAg                                                                                                                                                                              >  2:2493556/1‑288 (MQ=255)
                                                                           gccccATTGACACCCAAACGGTCTTCAACCCGCGCTGAGGCTGCCCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATCTCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGa                                                                                                                                                                         <  2:1157963/285‑1 (MQ=255)
                                                                               cATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTTTCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTAt                                                                                                                                                                     <  1:1229443/288‑1 (MQ=255)
                                                                                  tGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATGATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGCCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCcgc                                                                                                                                                                 >  1:2551112/1‑289 (MQ=255)
                                                                                       ccaAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGAACAAGATCAGCCAGCGTACGATTGCGCAAATAGTTTCCCGGAAGCTGATTATCCGCGCAAc                                                                                                                                                            >  2:296826/1‑289 (MQ=255)
                                                                                        caAAACGGTATTCACACCTCGCGGCGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACa                                                                                                                                                           <  2:1016349/289‑1 (MQ=255)
                                                                                         aaaaCGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATc                                                                                                                                                                    <  1:3126430/279‑1 (MQ=255)
                                                                                                tATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCt                                                                                                                                                                                                                                              <  1:2815619/198‑1 (MQ=255)
                                                                                                tATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCt                                                                                                                                                                                                                                              >  2:2815619/1‑198 (MQ=255)
                                                                                                     aaaCATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTg                                                                                                                                              <  1:1967503/289‑1 (MQ=255)
                                                                                                          tCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGaca                                                                                                                                                                                                                            >  1:371302/1‑206 (MQ=255)
                                                                                                          tCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATAAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCgggg                                                                                                                                         >  2:2891245/1‑289 (MQ=255)
                                                                                                              ggAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAAc                                                                                                                                     <  2:1847153/289‑1 (MQ=255)
                                                                                                                 ggCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc                                                                                                                                                                                                              <  1:269604/213‑1 (MQ=255)
                                                                                                                     aCGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCTTCCGCCGAGAGCAACGACACGATCACGAGCAGCCAGCGTACTATGCCGCAGATAGTTTCCTGGAGTCAGATTATCACAGATCCAGTAGCGAAATTTGCggggcaccgaccatt                                                                                                                              >  2:2633190/1‑278 (MQ=255)
                                                                                                                         tCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAAcc                                                                                                                          <  1:48137/289‑1 (MQ=255)
                                                                                                                          cGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTaa                                                                                                                            >  1:2851684/1‑286 (MQ=255)
                                                                                                                            gTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTg                                                                                                                        >  2:658929/1‑288 (MQ=255)
                                                                                                                             ttCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGc                                                                                                                       <  1:1514756/288‑1 (MQ=255)
                                                                                                                              tCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCa                                                                                                                     <  1:931919/289‑1 (MQ=255)
                                                                                                                              tCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCa                                                                                                                     <  1:658929/289‑1 (MQ=255)
                                                                                                                                     tCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGa                                                                                                              >  1:90143/1‑289 (MQ=255)
                                                                                                                                       aGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGaca                                                                                                                                                                                                                            >  1:1638051/1‑177 (MQ=255)
                                                                                                                                       aGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGaca                                                                                                                                                                                                                            <  2:1638051/177‑1 (MQ=255)
                                                                                                                                          tGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATa                                                                                                         >  2:714532/1‑289 (MQ=255)
                                                                                                                                            gTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCt                                                                                                                                                                                                                                              >  1:3211617/1‑154 (MQ=255)
                                                                                                                                            gTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc                                                                                                                                                                                                              >  2:2102890/1‑186 (MQ=255)
                                                                                                                                                      ttGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGAt                                                                                                                                                                                                   >  2:1572957/1‑187 (MQ=255)
                                                                                                                                                      ttGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGaaa                                                                                                                                      >  1:707367/1‑248 (MQ=255)
                                                                                                                                                      ttGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGaaa                                                                                                                                      <  2:1448783/248‑1 (MQ=255)
                                                                                                                                                          gcATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTttcttc                                                                                          <  2:1123758/288‑1 (MQ=255)
                                                                                                                                                                cGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTcc                                                                                                                                                                                   >  1:1158732/1‑193 (MQ=255)
                                                                                                                                                                   cccAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTccgccg                                                                                                                                                                                                                                        >  1:2302599/1‑137 (MQ=255)
                                                                                                                                                                         cAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGa                                                                             <  2:1967847/286‑1 (MQ=255)
                                                                                                                                                                           aTGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATg                                                                        <  1:2970076/289‑1 (MQ=255)
                                                                                                                                                                            tGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCata                                                                                                                                                                                           >  1:2754495/1‑173 (MQ=255)
                                                                                                                                                                            tGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTtcttct                                                                                         <  2:190236/271‑1 (MQ=255)
                                                                                                                                                                             gccgccTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCa                                                                      <  1:2120716/289‑1 (MQ=255)
                                                                                                                                                                               cgccTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACg                                                                    <  1:609437/289‑1 (MQ=255)
                                                                                                                                                                                 ccttctgaaCGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATAAAGATCAGCAAGCGTACGTTTGCGCATATAGTTTCCTGGAGTCAGATTATCTGCGCTACAGTAGCGCAAATTGCGGGGAAAAAGCAATTAACCTGCCAATATAGAGGATACAAACTATTTACTTCTACCTCTAAAGGACGCTGCCCGca                                                                  >  2:23372/9‑288 (MQ=255)
                                                                                                                                                                                    tctgaaCGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATg                                                               <  2:3155898/284‑1 (MQ=255)
                                                                                                                                                                                    tctgaaCGGCGAATACGCCCCGTCGAGCCAACAATATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATg                                                               <  2:1374531/284‑1 (MQ=255)
                                                                                                                                                                                     ctgaaCGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGc                                                              <  1:2891245/285‑1 (MQ=255)
                                                                                                                                                                                         aCGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTc                                                           <  1:737619/288‑1 (MQ=255)
                                                                                                                                                                                             cGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCt                                                                                                                                                                                                                                              >  2:3058358/1‑105 (MQ=255)
                                                                                                                                                                                             cGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCt                                                                                                                                                                                                                                              <  1:3058358/105‑1 (MQ=255)
                                                                                                                                                                                             cGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTcc                                                                                                                                                                                   >  1:2094141/1‑164 (MQ=255)
                                                                                                                                                                                                       ccgtcgagcCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGtata                                             >  1:1853303/8‑288 (MQ=255)
                                                                                                                                                                                                       ccgtcgagcCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTatat                                            <  2:2414422/282‑1 (MQ=255)
                                                                                                                                                                                                         gtcgagcCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCtgatg                                                    <  1:2824318/274‑1 (MQ=255)
                                                                                                                                                                                                                       aTCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGa                                                                             >  2:867023/1‑240 (MQ=255)
                                                                                                                                                                                                                          ggtggtggtGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAAAGTAAAACCGCCAtt                          <  1:341205/288‑1 (MQ=255)
                                                                                                                                                                                                                          ggtggtggtGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAAAGTAAAACCGCCAtt                          >  2:341205/1‑288 (MQ=255)
                                                                                                                                                                                                                             ggtggtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATAc                                                                                                        >  2:395701/1‑207 (MQ=255)
                                                                                                                                                                                                                             ggtggtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAAAGTaa                                    <  2:21533/275‑1 (MQ=255)
                                                                                                                                                                                                                               tggtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCt                    >  1:1127213/1‑289 (MQ=255)
                                                                                                                                                                                                                                ggtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCt                                                            >  2:1719055/1‑248 (MQ=255)
                                                                                                                                                                                                                                ggtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCt                                                            <  1:1719055/248‑1 (MQ=255)
                                                                                                                                                                                                                                ggtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCtgatg                                                    <  1:1596448/256‑1 (MQ=255)
                                                                                                                                                                                                                                 gtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc                                                                                                                                                                                                              >  2:311966/1‑101 (MQ=255)
                                                                                                                                                                                                                                 gtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGa                                                                             <  2:525208/230‑1 (MQ=255)
                                                                                                                                                                                                                                 gtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGa                                                                             >  1:525208/1‑230 (MQ=255)
                                                                                                                                                                                                                                 gtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTa                  >  2:933561/1‑289 (MQ=255)
                                                                                                                                                                                                                                    aCGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATg                                                               >  2:3205208/1‑241 (MQ=255)
                                                                                                                                                                                                                                      gATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACg                                                                    <  2:362067/234‑1 (MQ=255)
                                                                                                                                                                                                                                      gATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGc                                                              >  2:799953/1‑240 (MQ=255)
                                                                                                                                                                                                                                         aCCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATg                                                                        <  2:2764407/227‑1 (MQ=255)
                                                                                                                                                                                                                                         aCCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATg                                                               <  1:2631150/236‑1 (MQ=255)
                                                                                                                                                                                                                                         aCCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCtgatg                                                    >  2:2754017/1‑247 (MQ=255)
                                                                                                                                                                                                                                         aCCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCtga                                                      <  2:2839969/245‑1 (MQ=255)
                                                                                                                                                                                                                                         aCCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAAAGTAAAACCGCCA‑TTTCCCTTATTCTGTAGc         >  1:2231024/1‑289 (MQ=255)
                                                                                                                                                                                                                                           ccGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGaaa                                                                                                                                      <  1:1098888/163‑1 (MQ=255)
                                                                                                                                                                                                                                           ccGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGaaa                                                                                                                                      >  2:1098888/1‑163 (MQ=255)
                                                                                                                                                                                                                                           ccGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCtga                                                      <  2:2677231/243‑1 (MQ=255)
                                                                                                                                                                                                                                             gTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTAc                                                                                       <  1:2264124/208‑1 (MQ=255)
                                                                                                                                                                                                                                             gTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTAc                                                                                       >  2:2264124/1‑208 (MQ=255)
                                                                                                                                                                                                                                              ttAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGaaa     >  1:1431072/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 |||                                                                                                                                                                                                                                                                              
ATGGCTTCCAGAGGCCGCACGCTAAGGTGATCCAGCGCCTTTAACATCAAGTTTCCGAGATTATGACCGGAAAGTTCGCCATTGCCACCAAAACGGTATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCACTACGGCGAATACGCCCCGTGCTGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGAGCTAAGACTACTGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGGGAAACAGCAATTAACCTGCCAATATTGAGGATACAAACTATTTTCTTCTACCTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAG  >  CP042583/679138‑679667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A