Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	727,418	3 bp→CGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	727,418	0	G	C	99.7%	837.7 / NA	351	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (156/194); minor base T (0/1); total (156/195)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	727,419	0	C	G	99.4%	827.7 / NA	351	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (1/1); new base G (155/194); total (156/195)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	727,420	0	T	A	99.7%	838.8 / NA	351	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (155/194); minor base G (0/1); total (156/195)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 351 total aligned reads displayed.

CTGTGGCGAAGTTTGAGCAGGACTGGCAGGGAGCGTTTGGCAGAACGAGCATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAAGCTACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGTTCAGCAATCAATGCTGCAAGTTCTGCGTCATCCAGCA  >  CP042583/727143‑727698

|||

 tgtgGCGAAGTTTGAGCAGGACTGGCAGGGAGCGTTTGGCAGAACGTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCTTACATGACGATTTTCCCGCTGGCCGGTTTGCCCTAACCTTCCAGCATTTTGATCGCTTCCATTGCCTTCAACGACCCAATTACGc                                                                                                                                                                                                                                                                              >  2:1759372/1‑288 (MQ=255)

        aaGTTTGAGCAGGACTGGCAGGGAGCGTTTGGCAGAACGTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCaa                                                                                                                                                                                                                                                                       <  1:2150061/288‑1 (MQ=255)

            ttGAGCAGGACTGGCAGGGAGCGTTTGGCAGAACGTCGATTTAGCCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGt                                                                                                                                                                                                                                                                   <  2:2409484/288‑1 (MQ=255)

                  aGGACTGGCAGGGAGCGTTTGGCAGAACGTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAtt                                                                                                                                                                                                                                                             <  1:740687/288‑1 (MQ=255)

                    gACTGGCAGGGAGCGTTTGGCAGAACGTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCACTTACCCCGAACAACGGTGCCATTAc                                                                                                                                                                                                                                                           >  2:910465/1‑288 (MQ=255)

                       ttgCAGGGGGCGTTTGGCAGAACGTCGATTGAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGcc                                                                                                                                                                                                                                                        <  2:2579483/286‑1 (MQ=255)

                         gCAGGGAGCGTTTGGCAGAACGTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAtt                                                                                                                                                                                                                                                             <  1:3240698/281‑1 (MQ=255)

                              gAGCGTTTGGCAGAACGTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCCTCGGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCTCTTTCCTCCAACGAACCACTTACGCCGTTCCACGCTGCCATTAGGCATGTTTcc                                                                                                                                                                                                                                                 >  2:1329806/1‑288 (MQ=255)

                              gAGCGTTTGGCAGAACGTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGGAACGAACCTATTTCCCCGATCAACGGTTCCATTACGcccgtctcc                                                                                                                                                                                                                                                 >  2:1205419/1‑281 (MQ=255)

                              gAGCGTTTGGCAGAACGTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCaa                                                                                                                                                                                                                                                                       >  1:363098/1‑266 (MQ=255)

                                 cGTTTGGCAGAACTTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGTCAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACg                                                                                                                                                                                                                                              <  2:1513440/288‑1 (MQ=255)

                                 cGTTGGGCAGAACGTCGATTTATCCGGACGTTCTGAATCCTCAGAAATTGCTGATGGCGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACg                                                                                                                                                                                                                                              <  2:3111461/288‑1 (MQ=255)

                                  gTTTGGCAGAACGTCGATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCCCACACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACg                                                                                                                                                                                                                                              <  1:91288/289‑1 (MQ=255)

                                         agaacgtcgaTTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTaa                                                                                                                                                                                                                                      <  2:746021/279‑1 (MQ=255)

                                          gaacggcgaattAACCGGACGTTCTGCATCCTTAGTAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAAt                                                                                                                                                                                                                                     <  2:2735599/278‑1 (MQ=255)

                                             cgtcgaTTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCAt                                                                                                                                                                                                                                 >  2:1221505/6‑289 (MQ=255)

                                                           gACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATc                                                                                                                                                                                                                                                                         >  1:1680984/1‑235 (MQ=255)

                                                                tCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGt                                                                                                                                                                                                                                                                   >  1:1024885/1‑236 (MQ=255)

                                                                tCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCt                                                                                                                                                                                                              <  1:162196/289‑1 (MQ=255)

                                                                   gCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAg                                                                                                                                                                                                           >  2:1865108/1‑289 (MQ=255)

                                                                     aTCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGc                                                                                                                                                                                                         <  2:1582332/289‑1 (MQ=255)

                                                                      tcctccagaaTTGCTGTGGCGGTGGAGGTGTGCACAGTCTTATAAGGCCTGGAGGTGGAAATTACTGAC‑‑CACAAACCTCACTCCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGc                                                                                                                                                                                                         <  2:2783484/280‑1 (MQ=255)

                                                                       ccTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCaa                                                                                                                                                                                                                                                                       <  1:1346170/225‑1 (MQ=255)

                                                                            taaatggtgggtgccGTGGCGGAGTGCCGCGTCTTATCAGGCTTGGAGTTGGCCATTACTGCC‑‑CAAACACCTCACACCCCGGATTACGGATCAATCTCATTTCGCGAAACTCACAGGTCATCGTATCGTACATGACGATTTTCCCGCTGGCCTGTTTGCCATAGCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATa                                                                                                                                                                                                  <  2:3135098/275‑1 (MQ=255)

                                                                            tAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCaa                                                                                                                                                                                                                                                                       >  2:1464303/1‑220 (MQ=255)

                                                                            tAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCaa                                                                                                                                                                                                                                                                       <  1:1464303/220‑1 (MQ=255)

                                                                            tAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATa                                                                                                                                                                                                  >  2:713154/1‑289 (MQ=255)

                                                                            tAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTCGCCCTAACCTGCCACCATTTTGATCGCTTCCATTGCCTGCAACCAACCAATTCACCCGTTCACCGGTCCCATGACGCCTGCTTCCACGCCGGTAACTGCCTTTTCACCAAACAAACCGCTAAAGCAGCGaa                                                                                                                                                                                                   >  2:2824329/1‑287 (MQ=255)

                                                                              aaTTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAATCTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGc                                                                                                                                                                                                >  1:8912/1‑289 (MQ=255)

                                                                               aTTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCa                                                                                                                                                                                               <  2:653414/289‑1 (MQ=255)

                                                                                 tGCTGGTGACGTGGCGGGGTACCGCGTCTTATCAGGCCTGGGGGTGGCAATAACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACg                                                                                                                                                                                             <  2:1896211/289‑1 (MQ=255)

                                                                                   cTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCCACGAACCAATTACGCCGATCACCGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGCCTAAGGCAGCGATAGCACGGt                                                                                                                                                                                           >  1:3135098/1‑289 (MQ=255)

                                                                                   cTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCAc                                                                                                                                                                                              <  1:1912018/286‑1 (MQ=255)

                                                                                       tgaCGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGTCTAAGGCAGCGATAGCACGGTTCa                                                                                                                                                                                        <  1:2039897/288‑1 (MQ=255)

                                                                                       tgaCGTGGCGGAGGGCCGCGTCTTATCAGGCCTGTAGGTGGCAATAACTGCC‑‑CACACACCTCACACCCCTGATTACGCATCAGTTTCATTTCGCGAAACGGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCa                                                                                                                                                                                        <  2:2110456/288‑1 (MQ=255)

                                                                                       tcgcGTGGCGGAATGCCACGTCTTATCAGGCCGGGAGGTGGCCATTACTGCC‑‑CACACACCTCACACCCCTGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCAGCGCATCGTACATGACGATTTTCCCGCTTGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCa                                                                                                                                                                                        <  2:3037818/285‑1 (MQ=255)

                                                                                           gTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTc                                                                                                                                                                                   <  1:1363595/289‑1 (MQ=255)

                                                                                               ccgAGTGCCGCGTATCACTAGGTCGTGCGGTGGCAACTCCAGCC‑‑CACCCACCTCACTCCCCGGCTTACGCATCAGTTTCCTTTCGCGAAACTGACAGGGCATCGCATCGTACATGCCGAGTGTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGAAGGTTAATGCATTTTCACCAAACAAACGGGTAAGGCAGCGATAGCACGGTTCACCGTCCTg                                                                                                                                                                                <  2:2310970/286‑1 (MQ=255)

                                                                                                ggAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGa                                                                                                                                                                               <  1:2434507/288‑1 (MQ=255)

                                                                                                    tGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGt                                                                                                                                                                          >  1:2310970/1‑289 (MQ=255)

                                                                                                     gCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTa                                                                                                                                                                         <  1:78498/289‑1 (MQ=255)

                                                                                                      ccGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTCATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTaa                                                                                                                                                                        >  1:528275/1‑289 (MQ=255)

                                                                                                      ccGCGTCTTACCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCa                                                                                                                                                                                        <  2:1095642/273‑1 (MQ=255)

                                                                                                         cgTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCaa                                                                                                                                                                                                                                                                       >  1:832841/1‑191 (MQ=255)

                                                                                                         cgTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCaa                                                                                                                                                                                                                                                                       <  2:832841/191‑1 (MQ=255)

                                                                                                          gTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATa                                                                                                                                                                             <  1:2626550/280‑1 (MQ=255)

                                                                                                                     ccTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCtt                                                                                                                                                                                                                                                   >  1:3041705/1‑199 (MQ=255)

                                                                                                                        ggAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCt                                                                                                                                                       >  2:1302853/1‑288 (MQ=255)

                                                                                                                              ggCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATc                                                                                                                                                                                                                                                                         >  2:3284362/1‑168 (MQ=255)

                                                                                                                              ggCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGcc                                                                                                                                                                                                                                                        >  1:153959/1‑185 (MQ=255)

                                                                                                                              ggCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTg                                                                                                                                                                <  2:2685450/273‑1 (MQ=255)

                                                                                                                              ggCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATAc                                                                                                                                                >  1:1161211/1‑289 (MQ=255)

                                                                                                                              ggCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATAc                                                                                                                                                >  1:1810803/1‑289 (MQ=255)

                                                                                                                              ggCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATAc                                                                                                                                                >  1:3010811/1‑289 (MQ=255)

                                                                                                                              ggCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGACCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCa                                                                                                                                                                                               >  1:2763932/1‑242 (MQ=255)

                                                                                                                                cAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCg                                                                                                                                                                                                                                                                            >  2:167193/1‑163 (MQ=255)

                                                                                                                                               cacacCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCgg                                                                                                                                >  1:1076484/1‑289 (MQ=255)

                                                                                                                                                  acCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGaaa                                                                                                                             <  1:1759372/289‑1 (MQ=255)

                                                                                                                                                     tCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGAtt                                                                                                                                                             >  1:210949/1‑255 (MQ=255)

                                                                                                                                                            ccGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTa                                                                                                                    >  1:1741443/1‑288 (MQ=255)

                                                                                                                                                              ggATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCCGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑ACTTGCCGCGCCGGAAACCAGCGGTACCt                                                                                                                 >  1:402386/1‑289 (MQ=255)

                                                                                                                                                              ggATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCAt                                                                                                                                                                                                                                 <  1:623292/178‑1 (MQ=255)

                                                                                                                                                              ggATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCAt                                                                                                                                                                                                                                 >  2:623292/1‑178 (MQ=255)

                                                                                                                                                              ggATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGGTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACGAAATTCCCGC‑CCGGAAACCAACGGTTCCt                                                                                                                 >  2:172534/1‑289 (MQ=255)

                                                                                                                                                                     gCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCgg                                                                                                           >  2:1127204/1‑288 (MQ=255)

                                                                                                                                                                         cAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCcg                                                                                                                                      <  2:244096/257‑1 (MQ=255)

                                                                                                                                                                            tttCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACgg                                                                                                                                                                                                                                                                    >  1:2241893/1‑129 (MQ=255)

                                                                                                                                                                            tttCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACgg                                                                                                                                                                                                                                                                    <  2:2241893/129‑1 (MQ=255)

                                                                                                                                                                               cATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCAc                                                                                                                                                                                              <  2:3162219/196‑1 (MQ=255)

                                                                                                                                                                               cATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCAc                                                                                                                                                                                              >  1:3162219/1‑196 (MQ=255)

                                                                                                                                                                                      cgAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAg                                                                                                                                                                                                 >  1:2983660/1‑186 (MQ=255)

                                                                                                                                                                                      cgAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGaa                                                                                                                              >  2:1385666/1‑252 (MQ=255)

                                                                                                                                                                                      cgAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTAACTTCGCGGCAAAACAGCCTGCGTTCa                                                                                         >  1:2656502/1‑289 (MQ=255)

                                                                                                                                                                                         aaCTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGt                                                                                       <  1:2526753/288‑1 (MQ=255)

                                                                                                                                                                                                     atcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCAt                                                                                                                                                                                                                                 <  1:1891103/139‑1 (MQ=255)

                                                                                                                                                                                                            cgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGtt                                                                   <  2:3305953/289‑1 (MQ=255)

                                                                                                                                                                                                              tACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTAt                                                                 <  2:20642/289‑1 (MQ=255)

                                                                                                                                                                                                                        ttttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAGCAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGAtt                                                                                  <  2:2996167/262‑1 (MQ=255)

                                                                                                                                                                                                                        ttttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACg                                                                                                                                                                                             >  2:881705/1‑156 (MQ=255)

                                                                                                                                                                                                                        ttttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATCCG‑AATTGCCGCTCCGTAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTCCCGACACGTTATCCGTACCGTc                                                       >  2:2612548/1‑289 (MQ=255)

                                                                                                                                                                                                                        ttttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGt                                                                                       <  2:489061/257‑1 (MQ=255)

                                                                                                                                                                                                                        ttttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGt                                                                                       >  1:489061/1‑257 (MQ=255)

                                                                                                                                                                                                                        ttttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTc                                                       >  1:1280229/1‑289 (MQ=255)

                                                                                                                                                                                                                        ttttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTc                                                       >  1:3292590/1‑289 (MQ=255)

                                                                                                                                                                                                                           tCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCa                                                                                                                                                                                               <  1:2360865/151‑1 (MQ=255)

                                                                                                                                                                                                                               gCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCAcc                                                <  1:1127204/289‑1 (MQ=255)

                                                                                                                                                                                                                                    ccGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCa                                                                                                                                                                                        <  2:2495049/149‑1 (MQ=255)

                                                                                                                                                                                                                                    ccGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCa                                                                                                                                                                                        >  1:2495049/1‑149 (MQ=255)

                                                                                                                                                                                                                                         ttGCCATAACCTGCCAGCATTTTGATCGCATCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGGACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCTCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGtt                                      <  1:2936014/289‑1 (MQ=255)

                                                                                                                                                                                                                                                aaCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGTTCAGcaat                               <  2:1810803/289‑1 (MQ=255)

                                                                                                                                                                                                                                                    tGCTAGCATTTTGATCGCTTCCATTGCCTGCAACGAGCCAATTACGACGATCAACGGTGCCATTACGCCTGCTTCAACGCAGGTTAACGCATTTTCACCAAACAAACGGCTAAGGAAACGATAGAACGGTTCACCGACCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCTTTCAGTTGAGTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGTTCAGcaatcaat                           <  2:389662/289‑1 (MQ=255)

                                                                                                                                                                                                                                                    tGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGTTCAGcaatcaat                           <  1:1221505/289‑1 (MQ=255)

                                                                                                                                                                                                                                                      ccAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGc                                                                                                                                        >  1:2821302/1‑178 (MQ=255)

                                                                                                                                                                                                                                                          cATTTTGATCGCTTCCATTGCCTGCAACGAATCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCCAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCCCGCACCCGACCGTGTTCAGCAAGCAATGCTTCa                     >  2:1614776/1‑289 (MQ=255)

                                                                                                                                                                                                                                                           aTTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGTTCAGCAATCAATGCTGCaa                    >  1:2079304/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                  tCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGTTCAGCAATCAATGCTGCAAGTTCTg              <  1:1865108/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                    gCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGaaa                                                                                                                             <  1:696696/175‑1 (MQ=255)

                                                                                                                                                                                                                                                                    gCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACCGTCGATCCACAGATCGTTTTCCACAATCAACGCCTCAAGTTCTGCg            >  2:2014761/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                      ttCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGTTCAGCAATCAATGCTGCAAGTTCTGCGTCa         <  2:2938141/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                            tGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGTTCAGCAATCAATGCTGCAAGTTCTGCGTCATCcagc   <  2:193032/289‑1 (MQ=255)

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CTGTGGCGAAGTTTGAGCAGGACTGGCAGGGAGCGTTTGGCAGAACGAGCATTTAACCGGACGTTCTGCATCCTCATAAATTGCTGATGACGTGGCGGAGTGCCGCGTCTTATCAGGCCTGGAGGTGGCAATTACTGCC‑‑CACACACCTCACACCCCGGATTACGCATCAGTTTCATTTCGCGAAACTGACAGGTCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAAGCTACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTCCACGCAGGTTAATGCATTTTCACCAAACAAACGGCTAAGGCAGCGATAGCACGGTTCACCGTCCTGATAAGTAAAGACGGTGATTTGACCTTCCATACG‑AATTGCCGCGCCGGAAACCAGCGGTACCTTCGCGGCAAAACAGCCTGCGTTCAGTTGATTACGTACCGCAACGTTATCCGTACAGTCGAGCACCAGATCGTGTTCAGCAATCAATGCTGCAAGTTCTGCGTCATCCAGCA  >  CP042583/727143‑727698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A