Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F210 I1 R1 4928 385.2 6658600 97.5% 6492135 231.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 805,404 6 bp→TCATCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583805,4040AT98.9% 819.8 / ‑1.7 350intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (2/1);  major base T (169/174);  minor base C (3/1);  total (174/176)
Fisher's exact test for biased strand distribution p-value = 3.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP042583805,4050GC99.4% 821.0 / ‑6.3 350intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base C (170/175);  total (174/176)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01
*CP042583805,4060TA99.1% 826.3 / NA 350intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (2/1);  new base A (169/175);  total (174/176)
Fisher's exact test for biased strand distribution p-value = 6.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP042583805,4070AT98.9% 821.4 / NA 350intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (4/0);  new base T (169/175);  total (174/176)
Fisher's exact test for biased strand distribution p-value = 6.00e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583805,4080GC99.1% 819.7 / ‑5.9 350intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (2/1);  new base C (170/175);  total (174/176)
Fisher's exact test for biased strand distribution p-value = 6.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01
*CP042583805,4090CG99.1% 832.7 / 1.5 350intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/0);  major base G (170/175);  minor base . (2/1);  total (174/176)
Fisher's exact test for biased strand distribution p-value = 6.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.94e-01

Only 100 of 350 total aligned reads displayed.

ACCGTTTGTCCGTATGCCGACCTTGGAAAACCCGATCCAGACCAGCATTAGCATGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑AGTAGCGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGAGCCGGGAAGCGATTCCTGAACTGCCAA  >  CP042583/805133‑805677
                                                                                                                                                                                                                                                                                ||||||                                                                                                                                                                                                                                                                            
 ccGTTTGTCCGTATGCCGACCTTGGAAAACCCGATCCAGACCAGCATTTCGATGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTg                                                                                                                                                                                                                                                                 <  1:513146/289‑1 (MQ=255)
   gTTTGTCCGTATGCCGACCTTGGAATACCCGATCCAGACCAGCATTTCGATGTTTATGTGGACCGATGCCATTGAACGTGGCCCAGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGAc                                                                                                                                                                                                                                                               <  1:1594874/289‑1 (MQ=255)
       gTCCGTATGCCGACCTTGGAAAACCCGATCCAGACCAGCATTTCGATGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACAt                                                                                                                                                                                                                                                             >  1:70362/1‑287 (MQ=255)
         ccGTATGCCGACCTTGGAAAACCCGATCCAGACCAGCATTTCGATGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCctg                                                                                                                                                                                                                                                         <  1:2681030/289‑1 (MQ=255)
             aTGCCGACCTTGGAAACCCCGATCCAGACCAGCATTTCGATGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCctgctg                                                                                                                                                                                                                                                      <  1:60230/288‑1 (MQ=255)
             aTGCCGACCTTGGAAAACCCGATCCAGACCAGCATTTCGATGTTTATGTGGACCGCTGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCctgctg                                                                                                                                                                                                                                                      <  1:2889284/288‑1 (MQ=255)
                       tGGAAAACCCGATCCAGACCAGCATTTCGATGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCa                                                                                                                                                                                                                                            >  2:3069299/1‑288 (MQ=255)
                       tGGAAAACCCGATCCAGACCAGCATTTCGATGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCAc                                                                                                                                                                                                                                           <  1:1995723/289‑1 (MQ=255)
                              cccGATCCAGACCAGCATTTCGATGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTcc                                                                                                                                                                                                                                    >  1:3279855/1‑289 (MQ=255)
                                             catttcgaTGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACttt                                                                                                                                                                                                                     >  1:1688789/8‑289 (MQ=255)
                                             catttcgaTGTTTATGTGCACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGAc                                                                                                                                                                                                                                                               >  1:2401712/8‑247 (MQ=255)
                                                         tATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCa                                                                                                                                                                                                         <  1:1732551/289‑1 (MQ=255)
                                                         tATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCa                                                                                                                                                                                                         >  1:1084611/1‑289 (MQ=255)
                                                         tATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCa                                                                                                                                                                                                         <  1:3119484/289‑1 (MQ=255)
                                                            gtgGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATcc                                                                                                                                                                                                      <  1:2495897/289‑1 (MQ=255)
                                                               gACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATCAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGc                                                                                                                                                                                                   >  2:352628/1‑289 (MQ=255)
                                                                aCCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGc                                                                                                                                                                                                   <  2:2909073/288‑1 (MQ=255)
                                                                aCCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGc                                                                                                                                                                                                   <  1:1480097/288‑1 (MQ=255)
                                                                aCCGATGCCATTGAACGTAGCCCGGAAATGACGGCGCTGCGTTGTGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGc                                                                                                                                                                                                   <  2:2126852/288‑1 (MQ=255)
                                                                   gATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGa                                                                                                                                                                                               >  1:2137641/1‑289 (MQ=255)
                                                                    aTGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGaa                                                                                                                                                                                              >  1:2727331/1‑289 (MQ=255)
                                                                    aTGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGaa                                                                                                                                                                                              >  2:1103808/1‑289 (MQ=255)
                                                                     tGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAat                                                                                                                                                                                             >  1:324565/1‑289 (MQ=255)
                                                                               cGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACg                                                                                                                                                                                   >  1:1815434/1‑289 (MQ=255)
                                                                                 tGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTgcgc                                                                                                                                                                                                                 >  1:1898795/1‑257 (MQ=255)
                                                                                  ggCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGAt                                                                                                                                                                                                                            >  1:2056068/1‑245 (MQ=255)
                                                                                  ggCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGAt                                                                                                                                                                                                                            <  2:2056068/245‑1 (MQ=255)
                                                                                      cGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGCTGGACTTTGCGCTGGATGCATCCTGCGGGCATATGTCTTACGTCAattt                                                                                                                                                                            >  2:445596/1‑289 (MQ=255)
                                                                                      cGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGAtttt                                                                                                                                                                            <  2:586115/289‑1 (MQ=255)
                                                                                       ggAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCctgc                                                                                                                                                                                                                                                        <  1:2557131/212‑1 (MQ=255)
                                                                                       ggAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCctgc                                                                                                                                                                                                                                                        >  2:2557131/1‑212 (MQ=255)
                                                                                         aaaTGACGGCGCTGCGTGATGGTGGACGAGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCa                                                                                                                                                                          <  2:295826/288‑1 (MQ=255)
                                                                                              aCGGCGCGGCGTTATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGAt                                                                                                                                                                     <  2:2591669/288‑1 (MQ=255)
                                                                                               cGGCGATGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCa                                                                                                                                                                   <  1:793807/289‑1 (MQ=255)
                                                                                                  cgcTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCg                                                                                                                                                                                                                                   <  2:3265350/222‑1 (MQ=255)
                                                                                                       cGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTa                                                                                                                                                           >  2:2315154/1‑289 (MQ=255)
                                                                                                               tgtACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACcgcg                                                                                                                                                    <  2:1971962/288‑1 (MQ=255)
                                                                                                               tgtACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACcgc                                                                                                                                                     >  2:760401/1‑287 (MQ=255)
                                                                                                                 tACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCAc                                                                                                                                                                                                                                           >  2:2499358/1‑199 (MQ=255)
                                                                                                                  aCGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCttt                                                                                                                                                <  1:3202556/289‑1 (MQ=255)
                                                                                                                  aCGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCttt                                                                                                                                                <  1:1112135/289‑1 (MQ=255)
                                                                                                                      gggAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTg                                                                                                                                                                                                    >  2:2107222/1‑233 (MQ=255)
                                                                                                                      gggAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTg                                                                                                                                                                                                    <  1:2107222/233‑1 (MQ=255)
                                                                                                                         aaaGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACt                                                                                                                                                                                                                       >  1:1214448/1‑211 (MQ=255)
                                                                                                                         aaaGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTa                                                                                                                                         >  2:683905/1‑289 (MQ=255)
                                                                                                                         aaaGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTa                                                                                                                                         >  1:395667/1‑289 (MQ=255)
                                                                                                                              tAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGAc                                                                                                                                     <  1:1310684/288‑1 (MQ=255)
                                                                                                                                aGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCg                                                                                                                                                                                                                                   >  1:2364589/1‑192 (MQ=255)
                                                                                                                                aGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCg                                                                                                                                                                                                                                   <  2:2364589/192‑1 (MQ=255)
                                                                                                                                  cTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTgcgc                                                                                                                                                                                                                 <  1:62299/208‑1 (MQ=255)
                                                                                                                                  cTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCa                                                                                                                                                                   >  2:1479708/1‑254 (MQ=255)
                                                                                                                                          gCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATcc                                                                                                                                                                                                      >  2:1689112/1‑211 (MQ=255)
                                                                                                                                          gCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTg                                                                                                                                                                                                    >  2:3157047/1‑213 (MQ=255)
                                                                                                                                                        tCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGc                                                                                                          >  1:1000032/1‑289 (MQ=255)
                                                                                                                                                                 aagccgtgaaCTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCt                                                                                                 <  2:1815434/281‑1 (MQ=255)
                                                                                                                                                                 aTGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCt                                                                                                 <  2:1084611/289‑1 (MQ=255)
                                                                                                                                                                  tccccgTAACCGCCTGACTAACCAGCATTCTGAAATCAACCGTCCCCATGAAATCCGTCAGGATGATAAGAAGTCCTAGCTCAGCGTGCTTCTCGACTGCAACATGACC‑TCATCGGCGCAATATGCTGACCACCTGCTCCCTCACTCTACCGACTCCGAACAGACGAACCTAGTGCCGAATCCATCCTGCGGGAATATGGCGGAAGCGGTTTTCAACGATCACGGAATTAAATCGCGCTTTGAATGTAAGACCATCTATGAAACAACCAGCGAACTGTCAAAACGTCt                                                                                                 >  2:311689/6‑288 (MQ=255)
                                                                                                                                                                  tGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACCTCGTCG‑GCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCa                                                                                                                                                                                                         >  1:1910672/1‑184 (MQ=255)
                                                                                                                                                                  tGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCttt                                                                                                                                                >  2:1786656/1‑241 (MQ=255)
                                                                                                                                                                   gCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCg                                                                                                                                                                                                                                   <  2:1721852/157‑1 (MQ=255)
                                                                                                                                                                      ggTAACTACCGGATTAACCAGCATTCGGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCg                                                                                            <  1:344748/289‑1 (MQ=255)
                                                                                                                                                                       gTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAgg                                                                                                                                                                 <  1:1024362/219‑1 (MQ=255)
                                                                                                                                                                       gTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAgg                                                                                                                                                                 >  2:1024362/1‑219 (MQ=255)
                                                                                                                                                                            tGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGc                                                                                      <  2:1135327/289‑1 (MQ=255)
                                                                                                                                                                              ccTTATTAACCAGCATACTAGAATCACCCGTACCCATGCAATCCTTCAGGATTATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCaa                                                                                    <  2:2712813/289‑1 (MQ=255)
                                                                                                                                                                              ccTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGAcc                                                                                                                                    >  1:3001683/1‑241 (MQ=255)
                                                                                                                                                                              ccTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCaa                                                                                    <  1:2315154/289‑1 (MQ=255)
                                                                                                                                                                                           cATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCttt                                                                                                                                                >  2:2850642/1‑216 (MQ=255)
                                                                                                                                                                                            aTTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGAtttt                                                                                                                                                                            >  2:1165529/1‑187 (MQ=255)
                                                                                                                                                                                            aTTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAgg                                                                      <  2:615822/289‑1 (MQ=255)
                                                                                                                                                                                             ttCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGc                                                                     <  1:1959868/289‑1 (MQ=255)
                                                                                                                                                                                                                cATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGa                                                  <  1:226606/289‑1 (MQ=255)
                                                                                                                                                                                                                   gAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCttt                                                                                                                                                >  2:3304437/1‑192 (MQ=255)
                                                                                                                                                                                                                      aTCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGt                                                                                                                                          <  2:2266839/195‑1 (MQ=255)
                                                                                                                                                                                                                      aTCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGc                                            <  2:3024947/289‑1 (MQ=255)
                                                                                                                                                                                                                      aTCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGc                                            <  1:445596/289‑1 (MQ=255)
                                                                                                                                                                                                                      aTCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGc                                            <  1:2974988/289‑1 (MQ=255)
                                                                                                                                                                                                                      aTCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGc                                            <  1:2591151/289‑1 (MQ=255)
                                                                                                                                                                                                                       tCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCa                                           <  1:1769418/289‑1 (MQ=255)
                                                                                                                                                                                                                                 tgataggagtggCGGGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGcc                                 <  2:240167/278‑1 (MQ=255)
                                                                                                                                                                                                                                 tgatAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGcc                                 <  2:1000032/289‑1 (MQ=255)
                                                                                                                                                                                                                                 tgatAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGcc                                 <  2:1910648/289‑1 (MQ=255)
                                                                                                                                                                                                                                  gatAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAATTGACCAGCGAACTGGCAAACCGTCTTGGCGTTGAGCAACACTTTACTGACGGCCGTACCCAGGAAGCGTGGATGCGGCATCTGTATGacc                                >  2:2654228/1‑289 (MQ=255)
                                                                                                                                                                                                                                  gatAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGccc                                >  2:1899563/1‑289 (MQ=255)
                                                                                                                                                                                                                                   atAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCg                                                                   >  1:861857/1‑253 (MQ=255)
                                                                                                                                                                                                                                    tAAGAAGTGCGAGGTGATTTGGGTTTTCGACTGCCACATGACC‑TCATCGGCGACATATGCTGACCTCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCa                               <  2:2991984/288‑1 (MQ=255)
                                                                                                                                                                                                                                    tAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATcc                                                                                                                                                                                                                                                           >  2:83676/1‑68 (MQ=255)
                                                                                                                                                                                                                                    tAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGa                                                                                                                                                                                                             <  1:1449512/114‑1 (MQ=255)
                                                                                                                                                                                                                                           tGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGa                                                                         >  2:220233/1‑239 (MQ=255)
                                                                                                                                                                                                                                           tGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGa                                                                         <  1:220233/239‑1 (MQ=255)
                                                                                                                                                                                                                                               aGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGAc                                                                                                                                                                                                                                                >  2:2376118/1‑68 (MQ=255)
                                                                                                                                                                                                                                               aGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGAc                                                                                                                                                                                                                                                <  1:2376118/68‑1 (MQ=255)
                                                                                                                                                                                                                                               aGCTGATTGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAg                                                                                       <  2:2808823/221‑1 (MQ=255)
                                                                                                                                                                                                                                                     ttGTGGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCttt                                                                                                                                                >  1:3052969/1‑158 (MQ=255)
                                                                                                                                                                                                                                                      tgtgGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGAAGCGAtt               >  2:1606538/1‑286 (MQ=255)
                                                                                                                                                                                                                                                       gtgGTTATCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACCTCCTGCTGCCTGACTGCACCGCTTCCGAACAGATCGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGCGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGCCATCTGTATGCCCATTCGGGGGAAGCGATTcatt           >  2:1334632/1‑286 (MQ=255)
                                                                                                                                                                                                                                                              tCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGCTGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGAAGCGATTCCTGAACTGc     >  2:1425366/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              tCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTg                                                                                                                                                                                                    >  1:247392/1‑97 (MQ=255)
                                                                                                                                                                                                                                                              tCGACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTg                                                                                                                                                                                                    <  2:247392/97‑1 (MQ=255)
                                                                                                                                                                                                                                                                gACTGCCACATGACC‑TCATCGGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGAAGCGATTCCTGAACTGCCaa  <  1:2849359/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                ||||||                                                                                                                                                                                                                                                                            
ACCGTTTGTCCGTATGCCGACCTTGGAAAACCCGATCCAGACCAGCATTAGCATGTTTATGTGGACCGATGCCATTGAACGTGGCCCGGAAATGACGGCGCTGCGTGATGGTGTACGCGGGAAAGATAAGCTGGATGTGCCGATCAAAATGATCTGGAACTATGCCGGTAACTGCCTGATTAACCAGCATTCTGAAATCAACCGTACCCATGAAATCCTTCAGGATGATAAGAAGTGCGAGCTGATTGTGGTTATCGACTGCCACATGACC‑AGTAGCGCGAAATATGCTGACATCCTGCTGCCTGACTGCACCGCTTCCGAACAGATGGACTTTGCGCTGGATGCATCCTGCGGGAATATGTCTTACGTGATTTTCAACGATCAGGTGATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGAGCCGGGAAGCGATTCCTGAACTGCCAA  >  CP042583/805133‑805677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A