Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F210 I1 R1 4928 385.2 6658600 97.5% 6492135 231.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 833,147 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583833,1470AT99.7% 824.2 / NA 344intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (165/178);  minor base C (1/0);  total (166/178)
Fisher's exact test for biased strand distribution p-value = 4.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583833,1480GC99.4% 813.8 / NA 344intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (165/177);  minor base T (1/1);  total (166/178)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583833,1490CG99.7% 808.6 / NA 344intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (165/177);  total (166/178)
Fisher's exact test for biased strand distribution p-value = 4.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 344 total aligned reads displayed.

ATGATGAGCGCGATCTCGTTAGCCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTAGCCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGACAACGCTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGC  >  CP042583/832869‑833426
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                     
 tgatgaGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGa                                                                                                                                                                                                                                                                               >  2:1508275/1‑288 (MQ=255)
      aGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCtg                                                                                                                                                                                                                                                                          <  1:1354093/288‑1 (MQ=255)
           ggtctcggttcgcAAATAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCt                                                                                                                                                                                                                                                                    <  2:146181/277‑1 (MQ=255)
                  tttcgcAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATc                                                                                                                                                                                                                                                              >  1:2683788/6‑288 (MQ=255)
                    tcgcAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCCGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCa                                                                                                                                                                                                                                                           <  1:957136/286‑1 (MQ=255)
                          aCAGAAGCAGAATGCTTCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAAcgcg                                                                                                                                                                                                                                                     <  2:861125/289‑1 (MQ=255)
                                                  gATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCt                                                                                                                                                                                                                             >  2:2774965/1‑289 (MQ=255)
                                                        aGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCg                                                                                                                                                                                                                         >  1:1230538/1‑287 (MQ=255)
                                                         gTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCg                                                                                                                                                                                                                         >  1:1911442/1‑286 (MQ=255)
                                                          tGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGTCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCtg                                                                                                                                                                                                                                                                          <  2:1749984/236‑1 (MQ=255)
                                                          tGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCCGGGCAGCTGTTTGTGTTTTGGTACCGGccg                                                                                                                                                                                                                     >  2:1437153/1‑287 (MQ=255)
                                                          tGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTg                                                                                                                                                                                                                     >  1:3070150/1‑289 (MQ=255)
                                                           gcgcGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGc                                                                                                                                                                                                                       <  2:583549/286‑1 (MQ=255)
                                                           gcgcGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTg                                                                                                                                                                                                                     <  2:2961882/288‑1 (MQ=255)
                                                           gcgcGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTg                                                                                                                                                                                                                     <  2:1911442/288‑1 (MQ=255)
                                                           gcgcGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTg                                                                                                                                                                                                                     <  1:2439250/288‑1 (MQ=255)
                                                            cgcgTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGa                                                                                                                                                                                                                   >  1:2208620/1‑289 (MQ=255)
                                                             gcgTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGa                                                                                                                                                                                                                   <  1:2162972/288‑1 (MQ=255)
                                                             gcgTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  <  2:367253/289‑1 (MQ=255)
                                                              cgTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  <  1:538972/288‑1 (MQ=255)
                                                              cgTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  <  1:3173204/288‑1 (MQ=255)
                                                              cgTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  <  1:2287799/288‑1 (MQ=255)
                                                                 aGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCtg                                                                                                                                                                                                                                                                          >  1:273373/1‑229 (MQ=255)
                                                                             ttCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGa                                                                                                                                                                                                                   <  2:3127198/272‑1 (MQ=255)
                                                                             ttCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAgcg                                                                                                                                                                                                   >  1:687268/1‑288 (MQ=255)
                                                                             ttCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCCGCGTGGCGCGAAGCGAGGGCTGGACAGCAGCAAATCATTACTGTGCATGTTGAAAACTTGGGCAATCTTCGCCTTCATGATGCTTTGCTGCCGCCACTCGAGCGAGCGCTGGCCGGAAAGCCCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCTGCTTTTTGATTTTAGCTACCGGCTGGAGGGCTAGAccccctcc                                                                                                                                                                                                   >  2:1855520/1‑284 (MQ=255)
                                                                                cgcgAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGTCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGa                                                                                                                                                                                               <  1:2035563/289‑1 (MQ=255)
                                                                                          ggctggcAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGt                                                                                                                                                                                      <  1:3110662/288‑1 (MQ=255)
                                                                                            ctggcAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTAt                                                                                                                                                                                    <  2:687268/288‑1 (MQ=255)
                                                                                              ggcAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATgg                                                                                                                                                                                  >  2:2831596/1‑288 (MQ=255)
                                                                                                 aGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTCGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGa                                                                                                                                                                                                                   <  1:1050629/252‑1 (MQ=255)
                                                                                                     tACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCt                                                                                                                                                                                                                             >  1:1463148/1‑238 (MQ=255)
                                                                                                         aTCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCt                                                                                                                                                                      >  2:1128089/1‑289 (MQ=255)
                                                                                                          tCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTATTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  >  1:562258/1‑244 (MQ=255)
                                                                                                           cGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGc                                                                                                                                                                    <  1:3294856/289‑1 (MQ=255)
                                                                                                           cGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGc                                                                                                                                                                    <  1:1432928/289‑1 (MQ=255)
                                                                                                             gCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATcc                                                                                                                                                                                                                                                                            >  1:2334464/1‑183 (MQ=255)
                                                                                                             gCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCg                                                                                                                                                                  >  2:805451/1‑289 (MQ=255)
                                                                                                              cTGAAACGTCCGGCACTGGCGGCGTGGCGGGAAGGGAGGGCTGAACCACAGCAAATCATTTCTTTGCATGTTGAAAAATTTGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCg                                                                                                                                                                  <  1:159264/288‑1 (MQ=255)
                                                                                                              cTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCg                                                                                                                                                                  <  2:2683788/288‑1 (MQ=255)
                                                                                                              cTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCg                                                                                                                                                                  <  1:3218547/288‑1 (MQ=255)
                                                                                                                  aaCGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCtgttgt                                                                                                                                                                                                                                                                      <  2:3090693/184‑1 (MQ=255)
                                                                                                                  aaCGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGttatt                                                                                                                                                             >  2:1058114/1‑289 (MQ=255)
                                                                                                                      tCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCg                                                                                                                                                                                                >  1:2061452/1‑250 (MQ=255)
                                                                                                                      tCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTa                                                                                                                                                                                     >  2:748480/1‑261 (MQ=255)
                                                                                                                                gcggcgTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATGTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  <  1:3265856/222‑1 (MQ=255)
                                                                                                                                gcggcgTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATGTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  >  2:3265856/1‑222 (MQ=255)
                                                                                                                                                 gggggCTGAAAAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGAGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGa                                                                                                                               <  1:1798933/286‑1 (MQ=255)
                                                                                                                                                  aGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGAt                                                                                                                              >  1:1184178/1‑288 (MQ=255)
                                                                                                                                                    ggCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTg                                                                                                                                                                                                                     >  1:716066/1‑199 (MQ=255)
                                                                                                                                                       tGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCaa                                                                                                                         <  2:3303057/288‑1 (MQ=255)
                                                                                                                                                          aCAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATg                                                                                                                     >  1:1072704/1‑289 (MQ=255)
                                                                                                                                                               agcaAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGTTATTTTGTTCTGCCGTTATTACATCGt                                                                                                                                                      <  1:2493439/251‑1 (MQ=255)
                                                                                                                                                                   aaTCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  <  2:2614578/187‑1 (MQ=255)
                                                                                                                                                                        ttGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAgg                                                                                                       <  1:1698034/289‑1 (MQ=255)
                                                                                                                                                                         tGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGc                                                                                                      >  1:1742349/1‑289 (MQ=255)
                                                                                                                                                                             gtgCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATcc                                                                                                  <  1:3005851/289‑1 (MQ=255)
                                                                                                                                                                              tgCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  <  1:1624655/176‑1 (MQ=255)
                                                                                                                                                                              tgCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAg                                                                                                                                                                                                                  >  2:1624655/1‑176 (MQ=255)
                                                                                                                                                                              tgCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCtat                                                                                                                                                                                                            >  2:2705687/1‑182 (MQ=255)
                                                                                                                                                                                   gTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATTGATGCCAAAATGCATCGCAACACAGGCATCCTTGAAg                                                                                            >  2:44730/1‑289 (MQ=255)
                                                                                                                                                                                     tGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGc                                                                                                                                                                                                                       >  2:2874763/1‑164 (MQ=255)
                                                                                                                                                                                     tGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGtta                                                                                                                                                               <  2:969462/220‑1 (MQ=255)
                                                                                                                                                                                      gAAAAATTGGGCAATCTTTGGCTGAATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTa                                                                                         <  1:1517451/289‑1 (MQ=255)
                                                                                                                                                                                        aagaTTGGGCGCTCTTTGGCTGCATGATGATTTGCTGCCGCTACTCTAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGCTCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTAt                                                                                        <  2:2937446/285‑1 (MQ=255)
                                                                                                                                                                                        aaaaTTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGAATCGCCAGACAGGCATCCTTGAAGTTAt                                                                                        >  2:3228595/1‑288 (MQ=255)
                                                                                                                                                                                             tGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATctctct                                                                                  <  2:2344361/289‑1 (MQ=255)
                                                                                                                                                                                              gggCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCtg                                                                                 <  1:44730/289‑1 (MQ=255)
                                                                                                                                                                                                         tgCTGCATGGTGGTTTCCTGCCGCTACTCGAGCGAGCGCTGTCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCTCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATGTTAGCTACCGGCTGGAGTGCTATACCCCCGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGa                                                                      <  2:2056134/288‑1 (MQ=255)
                                                                                                                                                                                                         ggCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGa                                                                      <  1:278206/289‑1 (MQ=255)
                                                                                                                                                                                                         ggCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGa                                                                      <  1:384830/289‑1 (MQ=255)
                                                                                                                                                                                                          gCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCTCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGa                                                                      <  1:1855520/288‑1 (MQ=255)
                                                                                                                                                                                                              cATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTa                                                                 >  1:839186/1‑289 (MQ=255)
                                                                                                                                                                                                              cATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTa                                                                 >  1:2704380/1‑289 (MQ=255)
                                                                                                                                                                                                                tgatgaTTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGc                                                                                                                                                                    >  1:10243/1‑188 (MQ=255)
                                                                                                                                                                                                                    gatTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTAtt                                                               >  2:2473384/1‑285 (MQ=255)
                                                                                                                                                                                                                        tgctgcCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGa                                                                      <  1:994607/274‑1 (MQ=255)
                                                                                                                                                                                                                        tgctgcCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAAc                                                       >  2:2283138/1‑289 (MQ=255)
                                                                                                                                                                                                                         gctgcCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGc                                                                                                                                                                    >  2:158052/1‑179 (MQ=255)
                                                                                                                                                                                                                         gctgcCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCtgtg                                                                               <  2:1256019/264‑1 (MQ=255)
                                                                                                                                                                                                                         gctgcCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCtgtg                                                                               >  1:1256019/1‑264 (MQ=255)
                                                                                                                                                                                                                          ctgcCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTg                                                                                                                                                                                                                     <  2:2562524/129‑1 (MQ=255)
                                                                                                                                                                                                                          ctgcCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTg                                                                                                                                                                                                                     >  1:2562524/1‑129 (MQ=255)
                                                                                                                                                                                                                                       ggcgagcgCTGGCCGGAAAGCTACCTGCAACGAACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGACAACGCTGCaaa                                         <  2:1366237/287‑1 (MQ=255)
                                                                                                                                                                                                                                       agcgagcgCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACCGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGAAAACCCTGCaaaa                                        >  2:908529/1‑289 (MQ=255)
                                                                                                                                                                                                                                           agcgCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATgg                                                                                                                                                                                  <  2:646848/147‑1 (MQ=255)
                                                                                                                                                                                                                                           agcgCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTCGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATgg                                                                                                                                                                                  <  2:1034411/147‑1 (MQ=255)
                                                                                                                                                                                                                                             cgcTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGACAACGCTGCAAAAAGGGCt                                  >  1:2611097/1‑289 (MQ=255)
                                                                                                                                                                                                                                             cgcTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGACAACGCTGCAAAAAGGGCt                                  >  2:721854/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      gAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGACAACGCTGCAAAAAGGGCTACGTCAgg                          <  2:1665360/288‑1 (MQ=255)
                                                                                                                                                                                                                                                            tCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCt                                                                                                                                                                      <  2:3037963/142‑1 (MQ=255)
                                                                                                                                                                                                                                                            tCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTAtctc                                                                                     >  1:286482/1‑223 (MQ=255)
                                                                                                                                                                                                                                                                tGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGACAACGCTGCAAAAAGGGCTACGTCAGGCGATTACTGAt               <  2:2167062/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                     cGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAAcc                                                          >  1:80251/1‑241 (MQ=255)
                                                                                                                                                                                                                                                                          aGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGc                                                                                                                                                                                          <  2:2127291/108‑1 (MQ=255)
                                                                                                                                                                                                                                                                          aGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGc                                                                                                                                                                                          >  1:2127291/1‑108 (MQ=255)
                                                                                                                                                                                                                                                                          aGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGACAACGCTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACt     >  2:1216850/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            cgcgGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATcc                                                                                                  >  2:392395/1‑194 (MQ=255)
                                                                                                                                                                                                                                                                            cgcgGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATcc                                                                                                  <  1:392395/194‑1 (MQ=255)
                                                                                                                                                                                                                                                                            cgcgGTACTTTCGCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGACAACGCTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTg    >  1:2937419/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                     
ATGATGAGCGCGATCTCGTTAGCCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTAGCCCTTTTGATCCTGTTGTCTGGGATCGCAAACGCGCAGAGCAGCTTTTTGATTTTAGCTACCGGCTGGAGTGCTATACCCCAGCGCCGAAACGCCAGTATGGCTATTTTGTTCTGCCGTTATTACATCGTGGGCAATTAGTTGGGCGAATGGATGCCAAAATGCATCGCCAGACAGGCATCCTTGAAGTTATCTCTCTGTGGTTACAGGAAGGTATTAAACCAACGACAACGCTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGC  >  CP042583/832869‑833426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A