Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,794,054	3 bp→CGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,794,054	0	G	C	99.7%	755.9 / NA	319	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (154/164); total (155/164)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*	CP042583	1,794,055	0	C	G	99.7%	756.7 / NA	319	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (153/164); minor base T (1/0); total (155/164)
Fisher's exact test for biased strand distribution p-value = 4.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,794,056	0	T	A	99.7%	763.0 / NA	319	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (155/163); minor base C (0/1); total (155/164)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 319 total aligned reads displayed.

CGGCTTTGATCGTCACCGCCGTGTCGCCACCAGCCAGACTCAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCGCTGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGGCTAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCGCTATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGATTTTACTACCGACTTTAACGGGGGAAGCCGCCTGTAGCGG  >  CP042583/1793777‑1794335

|||

cGGCTTTGATCGTCACCGCCGTGTCGCCACCAGCCAGTGACAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCtt                                                                                                                                                                                                                                                                                >  1:2654040/1‑289 (MQ=255)

cGGCTTTGATCGTCACCGCCGTGTCGCCACCAGCCAGTGACAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCtt                                                                                                                                                                                                                                                                                >  1:607248/1‑289 (MQ=255)

      tGAGCGCCACCGCCGGGTCGCCACCAGCCAATGACAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGAc                                                                                                                                                                                                                                                                          <  2:2016017/289‑1 (MQ=255)

       attcagccccggcgTGACGCCACACGCCAGTGAAAGCAACTGCTCCTGACCGAGCTTAAGGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGCGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACt                                                                                                                                                                                                                                                                         <  2:250491/281‑1 (MQ=255)

         tCGTCACCGCGGTGTCGCCACCGGCCAGTGACAGCAACTGGTCCTGACCGGGCTTAAGGCCATAGGCTTTTTCAAACGCGGGTAAGGCATCGGGGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACtt                                                                                                                                                                                                                                                                        <  2:3008224/288‑1 (MQ=255)

           gTCACCGCCGGGTCGCCACCAGCCAGTGACAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTtct                                                                                                                                                                                                                                                                     <  2:834571/289‑1 (MQ=255)

                cgccgTGTCGCCACCAGCCAGTGACAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTa                                                                                                                                                                                                                                                                 >  2:1269691/1‑288 (MQ=255)

                     tgtCGCCACCAGCCAGTGACAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTtct                                                                                                                                                                                                                                                                     >  2:3191020/1‑279 (MQ=255)

                       tCGCCACCAGCCAGTGACAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTtgct                                                                                                                                                                                                                                                         >  2:2745265/1‑289 (MQ=255)

                       tCGCCACCAGCCAGTGACAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTtgct                                                                                                                                                                                                                                                         >  1:2701763/1‑289 (MQ=255)

                                   agtgacAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGAc                                                                                                                                                                                                                                                                          >  1:3207428/6‑260 (MQ=255)

                                     tgacAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGCTTAACTTATTGTGCTCCGAAGCGAGCTTTTTGACTATCTCGTAACCTTGCTTCACGTTTTTTCAc                                                                                                                                                                                                                                           >  1:529817/4‑289 (MQ=255)

                                           cAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCa                                                                                                                                                                                                                                     >  2:55453/1‑289 (MQ=255)

                                           cAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCa                                                                                                                                                                                                                                     >  2:955899/1‑289 (MQ=255)

                                           cAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCCCGTTCGATAAACTCTGCCGAGGCTGCCAGATTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGATCGGCAAGCGAAGTG‑AGTTTATTCTTCTCTGCCACATCCGGACGCACGGCGAT‑AGTCCACGTGTTATTTGCAGGCGCGGGTGTCAGCCAGATTAACTTGTTGTGCTCCGACTCGAGCTTTTTTTCTTTCGCGTACCTTTGCTGCTCGTTTTTacactcct                                                                                                                                                                                                                                       >  2:2965235/1‑283 (MQ=255)

                                            aaCTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCa                                                                                                                                                                                                                                     <  1:1017712/288‑1 (MQ=255)

                                               tGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACCCTTCCTCGt                                                                                                                                                                                                                                 >  2:2898645/1‑289 (MQ=255)

                                                                            tttttCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTg                                                                                                                                                                                                    <  1:2774835/289‑1 (MQ=255)

                                                                             ttttCAAACGGGGGTACCGCATCGGCGCGTTCGATAAACGCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑GGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGc                                                                                                                                                                                                   <  2:1395722/289‑1 (MQ=255)

                                                                              tttCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGcc                                                                                                                                                                                                  >  1:2872912/1‑289 (MQ=255)

                                                                                 cAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGt                                                                                                                                                                                               <  2:105123/289‑1 (MQ=255)

                                                                                    aCGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCAt                                                                                                                                                                                                                           >  2:1731580/1‑258 (MQ=255)

                                                                                    aCGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCAt                                                                                                                                                                                                                           <  1:1731580/258‑1 (MQ=255)

                                                                                     cgcgGGTAACGCATCGGCGCGTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAgcg                                                                                                                                                                                                          <  2:1239304/274‑1 (MQ=255)

                                                                                                       gcgTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACATTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGt                                                                                                                                                                         <  1:2176100/289‑1 (MQ=255)

                                                                                                        cgTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCa                                                                                                                                                                                                                                     <  2:3113276/228‑1 (MQ=255)

                                                                                                        cgTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGt                                                                                                                                                                                               >  1:683409/1‑266 (MQ=255)

                                                                                                        cgTTCGATAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCg                                                                                                                                                                                       <  1:206989/274‑1 (MQ=255)

                                                                                                               tAAACTCTGCCGAGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGa                                                                                                                                                                 <  1:1542135/289‑1 (MQ=255)

                                                                                                                       gccgaggctgCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAg                                                                                                                                                                          >  1:1853948/6‑272 (MQ=255)

                                                                                                                           aggctgCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCg                                                                                                                                                                                                                                                                   <  2:1479148/178‑1 (MQ=255)

                                                                                                                             gctgCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCg                                                                                                                                                                                       <  1:2362672/253‑1 (MQ=255)

                                                                                                                             gctgCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCcg                                                                                                                                                    >  2:2380652/1‑288 (MQ=255)

                                                                                                                               tgCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTA‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCgcgc                                                                                                                                                 <  1:2119718/289‑1 (MQ=255)

                                                                                                                               tgCCAGTTTGAAGGTGCCGCCCTCTTGCAGAGAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGAACGGCGAT‑AGTCCAGGTGTTAGTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCcgcg                                                                                                                                                  <  1:1324304/288‑1 (MQ=255)

                                                                                                                               tgCCAGTTTGAAGGTGACGCGCTCTTACAGATAACGACTCAGGTCGGCAAGCGAAGTG‑CATTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCcgcg                                                                                                                                                  <  2:2123045/288‑1 (MQ=255)

                                                                                                                                      tggaagtggccgcgCACTTGCAGATACCGTCTCATGTC‑GCTAAGCGAATGTAGTTTATTTTTCTCTGCCACATCCTGAAGAACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCAAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGcacca                                                                                                                                             <  2:2036155/278‑1 (MQ=255)

                                                                                                                                          aGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAg                                                                                                                                       <  1:3062273/288‑1 (MQ=255)

                                                                                                                                              gccgccCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGcgcg                                                                                                                                                                                                                                                    >  1:1786226/1‑175 (MQ=255)

                                                                                                                                              gccgccCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGcgcg                                                                                                                                                                                                                                                    <  2:1786226/175‑1 (MQ=255)

                                                                                                                                               ccgccCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCcgcg                                                                                                                                                  <  1:1183894/272‑1 (MQ=255)

                                                                                                                                               ccgccCTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCcgcg                                                                                                                                                  >  2:1493576/1‑272 (MQ=255)

                                                                                                                                                 gccCCCTGGCAGCTAACGACCCCGGGCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCg                                                                                                                               <  2:2633000/289‑1 (MQ=255)

                                                                                                                                                   ccTCTTGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAg                                                                                                                             <  1:2538152/289‑1 (MQ=255)

                                                                                                                                                       ttGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGc                                                                                                                         <  2:646448/289‑1 (MQ=255)

                                                                                                                                                       ttGCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGc                                                                                                                         >  1:1921272/1‑289 (MQ=255)

                                                                                                                                                         gCAGATAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTg                                                                                                                                                                                                    >  2:1660373/1‑212 (MQ=255)

                                                                                                                                                             aTAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACg                                                                                                                                                                                                                                          <  1:486557/170‑1 (MQ=255)

                                                                                                                                                              tAACGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTAt                                                                                                                  >  2:2256727/1‑289 (MQ=255)

                                                                                                                                                               aaCGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCgcgc                                                                                                                                                 >  1:227911/1‑257 (MQ=255)

                                                                                                                                                               aaCGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGcaccac                                                                                                                                            >  1:113498/1‑262 (MQ=255)

                                                                                                                                                                aCGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTCTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTc                                                                                                                <  1:437233/289‑1 (MQ=255)

                                                                                                                                                                 cGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGAc                                                                                                                                                                                                                                                                          >  2:2681428/1‑134 (MQ=255)

                                                                                                                                                                 cGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGt                                                                                                                                                                                               >  2:1582303/1‑209 (MQ=255)

                                                                                                                                                                 cGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAg                                                                                                                                       >  2:2213742/1‑265 (MQ=255)

                                                                                                                                                                 cGACTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTCTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTc                                                                                                                >  1:855951/1‑288 (MQ=255)

                                                                                                                                                                    cTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGgatag                                                                                                                                                                                  <  1:2686826/219‑1 (MQ=255)

                                                                                                                                                                    cTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCAcc                                                                                                             <  1:3189796/288‑1 (MQ=255)

                                                                                                                                                                    cTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCg                                                                                                            <  1:3123688/289‑1 (MQ=255)

                                                                                                                                                                    cTCAGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGACACATACTGACGAACGGCGAT‑AGTCTAGGTGTTATTTGTAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACATTGCTGCGTGTTTTTCTACGCTGCATCGTTTTCATTTTTAAAGAAGACAGCGACATTGCAGGTATATTCCGGAGAGATATCCAGGTAACCGGAAGTAATCGCCCGGTGCACGACAGGGGTGGTTCCGAGTGGAACATTATTCACCg                                                                                                            >  2:2585323/1‑289 (MQ=255)

                                                                                                                                                                       aGGTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCCCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCAt                                                                                                                                                                                                                           <  1:985095/175‑1 (MQ=255)

                                                                                                                                                                         gTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATc                                                                                                                                                                             <  1:1151109/219‑1 (MQ=255)

                                                                                                                                                                         gTCGGCAAGCGAAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATc                                                                                                                                                                             >  2:1151109/1‑219 (MQ=255)

                                                                                                                                                                              caagcgaaGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCa                                                                                                                                                                                                                                     >  1:2488680/8‑158 (MQ=255)

                                                                                                                                                                              caagcgaaGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGcc                                                                                                  >  2:595879/8‑289 (MQ=255)

                                                                                                                                                                               aagcgaaGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCg                                                                                                 <  1:723535/283‑1 (MQ=255)

                                                                                                                                                                                    gaggtgtctttATTTTCTTCTGCCACAACATGACGCTC‑GAGATAAGAGCTGGTGTTATTTGTAGGCGCAGGAGTCAGCCGAATTAACTTGTTTTGCTCCGAATGAAACTTTTTGACTTTCACGTAACCTTGCTGCGCGTTTTTCCACGCTGAATCGTTTTCATCTGTACAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGGCGGTACGCCGTgg                                                                                              <  2:2453982/280‑1 (MQ=255)

                                                                                                                                                                                                     ctctGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCaaa                                                                            >  2:483185/1‑289 (MQ=255)

                                                                                                                                                                                                               tCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTg                                                                   >  2:3139428/1‑288 (MQ=255)

                                                                                                                                                                                                                ccTGACGCACGGGGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGcc                                                                 <  2:2845705/289‑1 (MQ=255)

                                                                                                                                                                                                                  tGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCg                                                                                                                                                                                       <  1:1264917/169‑1 (MQ=255)

                                                                                                                                                                                                                   gACGCACGGCGGT‑AGTCCAGGTGGTATTTGCAGGCGCGTGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAg                                                              <  2:2308380/289‑1 (MQ=255)

                                                                                                                                                                                                                    aCGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGata                                                                      <  1:2934724/280‑1 (MQ=255)

                                                                                                                                                                                                                         cGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCg                                                                                                 <  2:437258/248‑1 (MQ=255)

                                                                                                                                                                                                                         cGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAgcgc                                                        <  1:2397306/289‑1 (MQ=255)

                                                                                                                                                                                                                         cGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAgcg                                                         >  2:910246/1‑288 (MQ=255)

                                                                                                                                                                                                                          ggCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACt                                                                                                                      >  1:343177/1‑226 (MQ=255)

                                                                                                                                                                                                                               t‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCtt                                                   <  1:1084047/288‑1 (MQ=255)

                                                                                                                                                                                                                               t‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGACAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCtt                                                   <  1:2965235/288‑1 (MQ=255)

                                                                                                                                                                                                                                       ggTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCAc                                                                                                              >  2:691219/1‑222 (MQ=255)

                                                                                                                                                                                                                                         tgtTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATc                                            <  1:202407/286‑1 (MQ=255)

                                                                                                                                                                                                                                            tATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGAc                                                                                                                                                                                                                                                                          >  2:3298820/1‑61 (MQ=255)

                                                                                                                                                                                                                                            tATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCAt                                                                                                                                                                                                                           >  2:3263500/1‑108 (MQ=255)

                                                                                                                                                                                                                                             aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCt                                                                                                                                                                                                                         <  1:1609501/109‑1 (MQ=255)

                                                                                                                                                                                                                                             aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTg                                                                                                                                                                                                    <  2:2696002/130‑1 (MQ=255)

                                                                                                                                                                                                                                             aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATCTTCCGGTTAGTTATCCAGTTCACCGGAAGTAATTGCCCCGCGCACAACAGGAGTCGTTCCGAGTTGCCCTTTATTCCCCGTCGGTACGCCGTGGCTTTCAAGCACCGGCAAAATGATATTGCCGATTAGCGCACCTACGGTACAGAttttt                                     >  2:370891/1‑288 (MQ=255)

                                                                                                                                                                                                                                             aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGcaccac                                                                                                                                            >  2:130458/1‑186 (MQ=255)

                                                                                                                                                                                                                                             aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGc                                                                                                                         <  1:3303126/205‑1 (MQ=255)

                                                                                                                                                                                                                                             aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGc                                                                                             >  1:1437842/1‑233 (MQ=255)

                                                                                                                                                                                                                                             aTTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGAttttt                                     >  1:457083/1‑288 (MQ=255)

                                                                                                                                                                                                                                                tGCATGCCCGGTCGTCAGCCAGATTAACTTTTTGTGCTCCGAATCGATCTTTTTGACTTTCTCGTAACCTTGCTTCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTTCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGTCTTTCCAGCACCTGCAAAATGATATTGACGAGTATCGCACCTTCGGTATCGAtttttgaa                                  <  1:2585323/289‑5 (MQ=255)

                                                                                                                                                                                                                                                        cgGGCGTCAGCCAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCaaaa                                                                           <  1:1481692/240‑1 (MQ=255)

                                                                                                                                                                                                                                                              tCAGCAAGATTAGCTTGTTGTGTTCCGCGTCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACgg                     <  2:1138743/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                   cAGATTAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAg               <  2:1922542/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                       ttAACTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAgc              <  1:955899/286‑1 (MQ=255)

                                                                                                                                                                                                                                                                           cTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCaaa                                                                            >  2:3314183/1‑220 (MQ=255)

                                                                                                                                                                                                                                                                           cTTGTTGTGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGt       >  1:828334/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                               ttgtGCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTGATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCg   <  2:2081067/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                                tgtgCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCgg  <  1:1839437/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                                tgtgCTCCGAATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGATTTTTGAACCGACTTTAACGGGGGAAGCCGCCTGTAGCg   >  2:1839437/1‑288 (MQ=255)

|||

CGGCTTTGATCGTCACCGCCGTGTCGCCACCAGCCAGACTCAGCAACTGATCCTGACCGAGCTTAAAGCCATAGGCTTTTTCAAACGCGGGTAACGCATCGGCGCGTTCGATAAACTCTGCGCTGGCTGCCAGTTTGAAGGTGCCGCCCTCTTGCAGATAACGACTCAGGTCGGCAAGGCTAGTG‑AGTTTATTTTTCTCTGCCACATCCTGACGCACGGCGAT‑AGTCCAGGTGTTATTTGCAGGCGCGGGCGTCAGCCAGATTAACTTGTTGTGCTCGCTATCGAGCTTTTTGACTTTCTCGTAACCTTGCTGCGCGTTTTTCCACGCTGCATCGTTTTCATCTTTAAAGAAGAAAGCGCCATTGCCGGTATATTCCGGATAGATATCCAGTTCACCGGAAGTAATCGCCCCGCGCACCACAGGAGTCGTTCCGAGTTGCACTTTATTCACCGTCGGTACGCCGTGGCTTTCCAGCACCTGCAAAATGATATTGCCGAGTAGCGCACCTTCGGTATCGATTTTACTACCGACTTTAACGGGGGAAGCCGCCTGTAGCGG  >  CP042583/1793777‑1794335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A