Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,923,927	3 bp→TCA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,923,927	0	A	T	99.2%	603.7 / NA	256	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/2); new base T (133/121); total (133/123)
Fisher's exact test for biased strand distribution p-value = 2.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01
*	CP042583	1,923,928	0	G	C	99.6%	602.6 / NA	256	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (0/1); new base C (133/120); total (133/123)
Fisher's exact test for biased strand distribution p-value = 4.76e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,923,929	0	T	A	99.2%	609.7 / NA	256	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (133/121); minor base C (0/2); total (133/123)
Fisher's exact test for biased strand distribution p-value = 2.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 256 total aligned reads displayed.

CGTGGTCTTATTTATGATTAACAGCCTGATTCAGTGAGAGAACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACAGCCAAAG‑TAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAAAGCGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCACTGCGTTGAACCAACCAACGGCCTGTTTATCACCCTGCCGG  >  CP042583/1923651‑1924197

                                                                                                                                                                                                                                                                                     ||||

   ggTCTTATTTATGATTAACAGCCTGATTCAGTGAGAGAACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGAtt                                                                                                                                                                                                                                                                  <  1:2874145/288‑1 (MQ=255)

   ggTCTTATTTATGATTAACAGCCTGATTCAGTGAGAGAACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTa                                                                                                                                                                                                                                                                 <  1:624285/289‑1 (MQ=255)

      cTTATTTATGATTAACAGCCTGATTCAGTGAGAGAACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCa                                                                                                                                                                                                                                                              <  1:528452/289‑1 (MQ=255)

             atGATTAACAGCCTGATTCAGTGAGAGAACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTggcgg                                                                                                                                                                                                                                                       <  1:729804/289‑1 (MQ=255)

                         cTGATTCAGTGAGAGAACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACg                                                                                                                                                                                                                                             <  1:2666150/287‑1 (MQ=255)

                           gATTCAGTGAGAGAACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATAACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAg                                                                                                                                                                                                                                         <  2:853528/289‑1 (MQ=255)

                                     gagaACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTg                                                                                                                                                                                                                                >  1:2331728/1‑288 (MQ=255)

                                      agaACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGa                                                                                                                                                                                                                                                                    >  1:176827/1‑251 (MQ=255)

                                      agaACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGc                                                                                                                                                                                                                               >  1:1102902/1‑288 (MQ=255)

                                        aaCCGGCCCTTTCTTGAGTTGCTGCGATGTGAAGAAAACATTCAAAAATTAAAGGTGAACTGCCGCACACATTATTAAATAAGATTTAAAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACGCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCcg                                                                                                                                                                                                                            <  2:1456683/289‑1 (MQ=255)

                                         aCCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCcg                                                                                                                                                                                                                            <  2:2833802/288‑1 (MQ=255)

                                          ccTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCcgcg                                                                                                                                                                                                                          >  1:2907421/1‑289 (MQ=255)

                                            tGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTTGCGGCGGCGCAACGGGAGCCGGGATTGCCcgcg                                                                                                                                                                                                                          >  2:2466898/1‑287 (MQ=255)

                                             gCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACt                                                                                                                                                                                                                       >  2:305463/1‑289 (MQ=255)

                                              ccGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCcgcg                                                                                                                                                                                                                          >  1:865219/1‑285 (MQ=255)

                                                           tGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCggg                                                                                                                                                                                                         <  2:3123789/289‑1 (MQ=255)

                                                             ccGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCgg                                                                                                                                                                                                          >  1:2640115/1‑286 (MQ=255)

                                                                          aaaaCATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACg                                                                                                                                                                                                                                             <  2:632829/238‑1 (MQ=255)

                                                                              cATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTg                                                                                                                                                                                      <  2:2907421/289‑1 (MQ=255)

                                                                                   aTAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAgcgc                                                                                                                                                                                 <  2:1971030/289‑1 (MQ=255)

                                                                                           aatGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACAt                                                                                                                                                                         <  1:996113/289‑1 (MQ=255)

                                                                                             tgtgAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATc                                                                                                                                                                        >  2:213287/1‑288 (MQ=255)

                                                                                                          acacaTTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCa                                                                                                                                                           <  1:16774/288‑1 (MQ=255)

                                                                                                           cacaTTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTgcg                                                                                                                                                                                                    >  2:1325099/1‑246 (MQ=255)

                                                                                                           cacaTTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCAcc                                                                                                                                                         >  1:3277876/1‑289 (MQ=255)

                                                                                                              attattAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGAGATTATCATTGGCCGCGGCGCAACCGGCGCCGGGATTGCCCCGGAATGTGCCTTTCGACGGCGACGCGTGATTTGGGGTGAGGGCCACAACCTCGCAACCgggtcccgctgg                                                                                                                                                      >  2:559925/1‑279 (MQ=255)

                                                                                                               ttattaAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGc                                                                                                                                                     <  1:3196205/289‑1 (MQ=255)

                                                                                                                tattaAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAACAAATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTGGGTTGAGCGCCAc                                                                                                                                                                              >  2:3016090/1‑264 (MQ=255)

                                                                                                                tattaAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAACACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCCCGACATCGCAACCGGTGCCACCGGGCg                                                                                                                                                    >  1:1573045/1‑289 (MQ=255)

                                                                                                                tattaAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCg                                                                                                                                                    <  2:1012260/289‑1 (MQ=255)

                                                                                                                tattaAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCg                                                                                                                                                    <  1:901211/289‑1 (MQ=255)

                                                                                                                tattaAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCg                                                                                                                                                    >  1:590107/1‑289 (MQ=255)

                                                                                                                     aaTAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTggcgg                                                                                                                                                                                                                                                       >  2:2229361/1‑185 (MQ=255)

                                                                                                                        aaGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTggcg                                                                                                                                                                                                                                                        <  1:3243307/181‑1 (MQ=255)

                                                                                                                        aaGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGATTGTGCCCTGCGCGGGCTGCGCGTTATGTTGGTTGAGGGCCACGCCCTCGCAACCGGTGCCACCGGGCGTAGCCACg                                                                                                                                            >  2:2743473/1‑289 (MQ=255)

                                                                                                                          gATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACt                                                                                                                                                                                                                       >  2:2947970/1‑212 (MQ=255)

                                                                                                                          gATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACgg                                                                                                                                           >  1:436363/1‑288 (MQ=255)

                                                                                                                           aTTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGcc                                                                                                                                         <  1:1958520/289‑1 (MQ=255)

                                                                                                                            tttACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCggg                                                                                                                                                                                                         >  2:1884243/1‑224 (MQ=255)

                                                                                                                            tttACAAAATGTTCAAAATGACGCATGAAATCACGTTTACCTTTCGAATTATGAGCGAATAGGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGGAAAAAACGAACTTCAGAGGGATAAC‑AAGGAAAACCCGCGACTCGCAATC‑AAGT‑GACGTGATGATCATGGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGc                                                                                                                                          <  2:1215678/287‑1 (MQ=255)

                                                                                                                               aCAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACg                                                                                                                                                                                                                                             <  1:2202167/185‑1 (MQ=255)

                                                                                                                                            aaTGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTgcg                                                                                                                        <  1:2834896/289‑1 (MQ=255)

                                                                                                                                               gACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTgcgcgc                                                                                                                     <  1:301633/289‑1 (MQ=255)

                                                                                                                                                 cGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGTAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCt                                                                                                                    <  1:100344/288‑1 (MQ=255)

                                                                                                                                                 cGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGt                                                                                                                                                                                                 <  2:1248740/211‑1 (MQ=255)

                                                                                                                                                 cGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGt                                                                                                                                                                                                 >  1:1248740/1‑211 (MQ=255)

                                                                                                                                                 cGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTa                                                                                                                   >  2:1721813/1‑289 (MQ=255)

                                                                                                                                                 cGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTa                                                                                                                   <  2:3160803/289‑1 (MQ=255)

                                                                                                                                                            aCGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGc                                                                                                                                          <  1:2708711/255‑1 (MQ=255)

                                                                                                                                                            aCGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGc                                                                                                                                          >  2:2708711/1‑255 (MQ=255)

                                                                                                                                                              gTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGcc                                                                                                                                                                                                                              <  2:2758763/169‑1 (MQ=255)

                                                                                                                                                                  cACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACg                                                                                                                                                                             >  2:673964/1‑214 (MQ=255)

                                                                                                                                                                  cACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACg                                                                                                                                                                             <  1:673964/214‑1 (MQ=255)

                                                                                                                                                                        cGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCcg                                                                                                                                                                                                                            <  2:2506784/161‑1 (MQ=255)

                                                                                                                                                                        cGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCcg                                                                                                                                                                                                                            >  1:2506784/1‑161 (MQ=255)

                                                                                                                                                                          aaTTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGaatcggc                                                                                           >  1:1656238/1‑283 (MQ=255)

                                                                                                                                                                           aTTATGAGAGAATAAGCACGAAATCAAACAATTCAGGTTTTTACTATGGCTAAATGGAAAAAAACGAACTACAGAGGAATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGaatcggc                                                                                           <  2:151956/287‑6 (MQ=255)

                                                                                                                                                                               tGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGa                                                                                     <  1:196879/289‑1 (MQ=255)

                                                                                                                                                                                 aGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAAt                                                                                   >  1:759422/1‑289 (MQ=255)

                                                                                                                                                                                 aGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAAt                                                                                   >  2:1960794/1‑289 (MQ=255)

                                                                                                                                                                                         tGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTGCAGAGAGATAAC‑AATGAACACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCTTTGGCGGGAGGGCAACGGGAGCTGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGt                                                                           <  1:3325207/289‑1 (MQ=255)

                                                                                                                                                                                           cgcgAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGa                                                                                     <  1:2100046/277‑1 (MQ=255)

                                                                                                                                                                                             cgAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTTCGCGCTATGCGGTAACCGCTGCGGAATCGGCCCGCGAATGCATTAGTGaaa                                                                       >  2:1091708/1‑289 (MQ=255)

                                                                                                                                                                                                          ttCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACg                                                                                                                                            <  2:421464/207‑1 (MQ=255)

                                                                                                                                                                                                           tCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGaaa                                                         <  1:857834/289‑1 (MQ=255)

                                                                                                                                                                                                            cATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCaa                                                                                                                                                                                                                                               <  1:1383859/106‑1 (MQ=255)

                                                                                                                                                                                                            cATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCaa                                                                                                                                                                                                                                               >  2:1383859/1‑106 (MQ=255)

                                                                                                                                                                                                            cATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGa                                                                                                                                                                            >  2:989279/1‑173 (MQ=255)

                                                                                                                                                                                                            cATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGa                                                                                                                                                                            <  1:989279/173‑1 (MQ=255)

                                                                                                                                                                                                             aTGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACg                                                       <  2:865219/289‑1 (MQ=255)

                                                                                                                                                                                                                    tatgaTGGCTAAAAGGTAAAAAACGAACTTCAGAGGGATAAC‑AAAGAAAACTCGCGACTAGCAATA‑AGGT‑AACGTGTGTATCCTGGGCGGCGGCGCAAGGGGAGCCGGGATTGCCCGCGACTGGGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGAACTCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCTGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTgga                                                <  2:385228/285‑3 (MQ=255)

                                                                                                                                                                                                                    tACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCa                                                <  1:1590414/289‑1 (MQ=255)

                                                                                                                                                                                                                    tACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATAGc                                                 >  1:1343680/1‑288 (MQ=255)

                                                                                                                                                                                                                    tACTATGGCTAAATGGT‑AAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGGGATTATCATTTGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGGGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAAACAGAACCTGAAACGCCTTGcca                                               >  1:415995/1‑287 (MQ=255)

                                                                                                                                                                                                                         tGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGccc                                                                                                                                                                                                                 <  2:1110615/123‑1 (MQ=255)

                                                                                                                                                                                                                         tGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCa                                           <  1:3073441/289‑1 (MQ=255)

                                                                                                                                                                                                                         tGGCCAAATGGTAAAAAACGAAAGTCAGAGGGATAAC‑AAGGAAAACCCGCGACTCGCAATC‑AAGT‑GACGTGATGATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGGGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCa                                           <  2:3249710/289‑1 (MQ=255)

                                                                                                                                                                                                                          ggCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGAtt                                                                                                                                                                                                                                 <  2:1495397/106‑1 (MQ=255)

                                                                                                                                                                                                                          ggCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGAtt                                                                                                                                                                                                                                 >  1:1495397/1‑106 (MQ=255)

                                                                                                                                                                                                                           gCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGAtt                                                                                                                                                                                             <  1:2940288/141‑1 (MQ=255)

                                                                                                                                                                                                                           gCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCCCGGCCTGCTTCACAGCGGTGCCCGCGATGCGGTAACCGATGCGGAATCGGCCCGCGACTGCATTAGTTAAAACCAGATCCTGAAACGCACTGCActgccac                                         >  2:2375423/1‑283 (MQ=255)

                                                                                                                                                                                                                           gCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCctg                                                                                                                                       >  2:944418/1‑195 (MQ=255)

                                                                                                                                                                                                                           gCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGaaaa                                                                      >  1:183157/1‑260 (MQ=255)

                                                                                                                                                                                                                           gCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTc                                            >  1:2279858/1‑286 (MQ=255)

                                                                                                                                                                                                                           gCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCCAATGCATTAGTGCAAAACGGATCCTGAAACGCCTTTCACGTc                                            >  2:1131310/1‑286 (MQ=255)

                                                                                                                                                                                                                           gCTAAATGGAAAAAAACGAACTTCAGAGGCATAAC‑AATGAAAACGCGCGAC‑TCGAAAGCCAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTACGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCa                                           <  1:79009/287‑1 (MQ=255)

                                                                                                                                                                                                                              aaaTGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCACTGCg                                      <  1:1189702/289‑1 (MQ=255)

                                                                                                                                                                                                                                 tGGTAAAAAAAGAAAGTACGGGGGATAAC‑AAGGAAGACTCGCGGCTCGCAATC‑AGGT‑GGCGTGGTTATCATGGGGGGCGGGGCAACGGGAGCCGGGATTGCCCGCGACTGGGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACAGCGCAAACGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCACTGCGTTg                                   <  2:2640115/289‑1 (MQ=255)

                                                                                                                                                                                                                                   gTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCg                                                                                                                             <  1:1304557/197‑1 (MQ=255)

                                                                                                                                                                                                                                     aaaaaaCGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGcaca                                                                                                                                <  2:787171/192‑1 (MQ=255)

                                                                                                                                                                                                                                     aaaaaaCGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCcgc                                                                                       >  1:273897/1‑233 (MQ=255)

                                                                                                                                                                                                                                      aaaaaCGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCACTGCGTTGaacca                              >  1:2989235/1‑289 (MQ=255)

                                                                                                                                                                                                                                           cGAACTTTAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGcc                                                                                                                                         <  2:2008791/177‑1 (MQ=255)

                                                                                                                                                                                                                                            gAACTTCAGGGTGATAGC‑AAGGAAAATTGGCGAC‑TCGCAAT‑CAGTGGACGGGATTTTCATTGGGGGCGGGGCAACGGGAGCTGGGATTGCCCGCGACTGGGCCCTGCGCGGGCTGCGCGTGAGTTTGGTTGAGAGCCACGACATCGCAACCGGTGCCACCGGGCGTGACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCACTGCGTTGAAccaaccaa                         <  2:1748827/288‑1 (MQ=255)

                                                                                                                                                                                                                                              aCTTCAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCa                                                <  2:1674207/263‑1 (MQ=255)

                                                                                                                                                                                                                                                  cAGAGGGATAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCa                                                                                                                                                                     <  1:2422148/142‑1 (MQ=255)

                                                                                                                                                                                                                                                          tAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGcc                                                                                                                                         <  2:1605100/162‑1 (MQ=255)

                                                                                                                                                                                                                                                          tAAC‑AATGAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCACTGCGTTGAACCAACCAACGGCCTGTTTATCa           >  2:2194079/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                  gAAAACTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGCATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCACTGCGTTGAACCAACCAACGGCCTGTTTATCACCCTGCCg   >  1:114687/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                   aaaaCTCGCGACTCGCAATC‑AAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGaa                                                                                    >  2:3286461/1‑207 (MQ=255)

                                                                                                                                                                                                                                                                                     ||||

CGTGGTCTTATTTATGATTAACAGCCTGATTCAGTGAGAGAACCTGCCGTTTCTTGAGTTGCCGCGATGTTAAGAAAACATTCATAAATTAAATGTGAATTGCCGCACACATTATTAAATAAGATTTACAAAATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAAC‑AATGAAAACTCGCGACAGCCAAAG‑TAGT‑GACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTGCCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCACCGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAAAGCGCCCGCGAATGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCACTGCGTTGAACCAACCAACGGCCTGTTTATCACCCTGCCGG  >  CP042583/1923651‑1924197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A