Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F210 I1 R1 4928 385.2 6658600 97.5% 6492135 231.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,933,909 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,933,9090GC99.8% 967.8 / NA 408intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (211/196);  total (211/197)
Fisher's exact test for biased strand distribution p-value = 4.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,933,9100CG99.8% 970.0 / NA 408intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (211/195);  total (211/197)
Fisher's exact test for biased strand distribution p-value = 4.82e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,933,9110TA99.8% 978.6 / NA 408intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (211/196);  minor base G (0/1);  total (211/197)
Fisher's exact test for biased strand distribution p-value = 4.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 408 total aligned reads displayed.

TGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCGCTAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGACTAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACGCTCTGTCCGGCAACACGTTTAACATCCAGCCACAG  >  CP042583/1933629‑1934190
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                       
tGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGTGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGc                                                                                                                                                                                                                                                                                   <  1:2623252/289‑1 (MQ=255)
tGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGc                                                                                                                                                                                                                                                                                   <  2:601964/289‑1 (MQ=255)
          ttGCCGGAGGGGGAGTGGGCTGGTGAAGGAAACCGGGCCAGAGTGGCGGACTCAGACAGATCAGGTCACGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATCTCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGc                                                                                                                                                                                                                                                                         <  2:2123796/289‑1 (MQ=255)
           tGCCGGAGGGGGAATGTGCCGGTGAAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTAAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGcc                                                                                                                                                                                                                                                                        <  2:3051148/289‑1 (MQ=255)
                              cGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccg                                                                                                                                                                                                                                                     <  2:2643368/289‑1 (MQ=255)
                                gTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccgc                                                                                                                                                                                                                                                    >  2:870109/1‑288 (MQ=255)
                                 tGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccgccg                                                                                                                                                                                                                                                  >  1:3131008/1‑289 (MQ=255)
                                  gaaggaaaCCGGCACGGAGTGGCGGAATCAGACAGATAAGGTACTGGCCTCAACAACCTCATTCCAGCCATGCTCACTGGCGATATCCGGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑GGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAG‑CCGGCAAAATGGTTGGCCCGCCGtt                                                                                                                                                                                                                                                <  2:137990/284‑1 (MQ=255)
                                  gCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGTACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccgccg                                                                                                                                                                                                                                                  <  1:3262048/288‑1 (MQ=255)
                                           cgccacaGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACCGCGCAGC‑ATATTCAGTGCCCTCATTGCGCACACTTCCTGACGGATAACCAGGCTGTAACGCGTCGTCCTGAAACGCACACGCAGAGCTAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTACTAGAAACCCGAACCAGCCAGTGCCAGCCCGGCAAACTGGTTGGCCCGCCGTTCTgagat                                                                                                                                                                                                                                         >  2:812198/4‑284 (MQ=255)
                                              tacaGAGGGGCGGACTCAAACAGAAAATGACATGGCGTCAAAAACCAATATCCAGCCAAGCTACCTGGGGATATCCGGGCAGTGAAACCCACGGAGCAGC‑ATAGTCAGGGCCATCATGGCGCACACTTCCTGACGGATAGCCAGGCGGTAGGGCGTAGGGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCACGCCGTTCTGTAATCCa                                                                                                                                                                                                                                      <  2:2878730/287‑1 (MQ=255)
                                                   agTGGAGGAATCAGACAGATAAGGGCATGGACTTAACAACCTCAATCAGGCCTTGCTGACGGGCAATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGAACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGGAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTgcg                                                                                                                                                                                                                                 <  2:2953655/288‑1 (MQ=255)
                                                              cagaccgcTAGGGTCACTAACTCACCACCCTCAAGCGACCCAGGCTCAGTGGGGATACCCCGGCCGTTTAACCAACGGCG‑AGCGAGATACCTGGCAATAATTGCCAACCCTTCCTGACGGAGAGCCAGGCTGTAGCGCGTAGTGCTGACGCGCACACGCAGCGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCa                                                                                                                                                                                                                     <  2:2051183/289‑1 (MQ=255)
                                                                           taaTGGACTAAAACACCTCCATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGAAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTtcctcc                                                                                                                                                                                                          <  2:3189712/285‑1 (MQ=255)
                                                                               ggACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGc                                                                                                                                                                                                                                                                                   <  2:2814183/210‑1 (MQ=255)
                                                                               ggACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGc                                                                                                                                                                                                                                                                                   >  1:2814183/1‑210 (MQ=255)
                                                                               ggACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGcc                                                                                                                                                                                                                                                                        >  2:75591/1‑221 (MQ=255)
                                                                               ggACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccgccg                                                                                                                                                                                                                                                  >  2:1653157/1‑243 (MQ=255)
                                                                                     aacaacCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGc                                                                                                                                                                                                                                                                             >  2:3120219/1‑210 (MQ=255)
                                                                                     aacaacCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAAcc                                                                                                                                                                                              >  1:1526669/1‑289 (MQ=255)
                                                                                     aacaacCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAAcc                                                                                                                                                                                              >  1:296195/1‑289 (MQ=255)
                                                                                     aacaacCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTACCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAAcc                                                                                                                                                                                              >  1:358771/1‑289 (MQ=255)
                                                                                          ccTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccgccg                                                                                                                                                                                                                                                  >  1:833223/1‑232 (MQ=255)
                                                                                               aTCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccg                                                                                                                                                                                                                                                     >  2:1743595/1‑224 (MQ=255)
                                                                                               aTCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAAc                                                                                                                                                                                               <  1:2260903/278‑1 (MQ=255)
                                                                                               aTCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAAc                                                                                                                                                                                               <  1:1847821/278‑1 (MQ=255)
                                                                                               aTCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCacac                                                                                                                                                                                     >  2:1190208/1‑288 (MQ=255)
                                                                                               aTCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCCCCTGTGAAGGAACCACTTCacac                                                                                                                                                                                     >  1:2893219/1‑288 (MQ=255)
                                                                                                tCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGc                                                                                                                                                                                   <  1:942681/289‑1 (MQ=255)
                                                                                                     ccATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGcc                                                                                                                                                                                                                                                       <  1:3189902/216‑1 (MQ=255)
                                                                                                     ccATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGtt                                                                                                                                                                                                                            >  2:1586249/1‑243 (MQ=255)
                                                                                                      cATGCGCCCGGGCGATATCCTGGCAGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCaa                                                                                                                                                                             <  2:1899747/289‑1 (MQ=255)
                                                                                                        ggaccACTGCGGATGTCCTGGCCGTTTAACCAACGGCGAAGC‑ATATTCAGGGCCATCATTGCGCACCCTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGGGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATg                                                                                                                                                                           <  2:2241572/285‑1 (MQ=255)
                                                                                                              cTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACCGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCAc                                                                                                                                                                     <  1:1984185/289‑1 (MQ=255)
                                                                                                               tGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCa                                                                                                                                                                                             <  1:2855802/264‑1 (MQ=255)
                                                                                                               tGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCa                                                                                                                                                                                             >  2:2855802/1‑264 (MQ=255)
                                                                                                                         ttGGCCGTTTAGCCAAAGCGGCAGC‑ATAGTCAGTGAAATCATGGCGCACACTTCCTGACGGTTAGCCAGGCTGTAGGGCGTAGTGCGGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAGAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACCGCCAGTGCCAGCCCGGCAACATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGaa                                                                                                                                                          <  2:2509153/288‑1 (MQ=255)
                                                                                                                           ggCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAg                                                                                                                                                        >  1:1493530/1‑289 (MQ=255)
                                                                                                                            gCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACtt                                                                                                                                                                                          <  1:2522374/254‑1 (MQ=255)
                                                                                                                                tttAACGAGAGGGGCAGC‑ATTTTCAGTGCCATCATTGCGAACACTGCGTGACGGATAGCCGGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGAAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCa                                                                                                                                                   <  2:2533145/289‑1 (MQ=255)
                                                                                                                                 ttAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGc                                                                                                                                                                                                                                                                                   >  1:71784/1‑160 (MQ=255)
                                                                                                                                 ttAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccg                                                                                                                                                                                                                                                     >  2:1276539/1‑190 (MQ=255)
                                                                                                                                 ttAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTcctcct                                                                                                                                                                                                         >  1:2056874/1‑234 (MQ=255)
                                                                                                                                 ttAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCaa                                                                                                                                                  >  2:689948/1‑289 (MQ=255)
                                                                                                                                 ttAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCaa                                                                                                                                                  <  2:1493530/289‑1 (MQ=255)
                                                                                                                                    aCCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGc                                                                                                                                               <  1:632366/289‑1 (MQ=255)
                                                                                                                                          ggCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTgtgaagga                                                                                                                                                                                                 >  2:185481/1‑226 (MQ=255)
                                                                                                                                          ggCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATaa                                                                                                                                         >  1:43139/1‑289 (MQ=255)
                                                                                                                                             aagggacagttCAGTGCCATCATTCGGCACACTTCCAGACGGAGAGCCAGGCGGAAGGGCGTAGGGCGGAAACGCACGCGAAGGGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑GGGGAGGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAac                                                                                                                                       <  2:499257/280‑1 (MQ=255)
                                                                                                                                                 c‑aTATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCg                                                                                                                                  >  1:1578083/1‑289 (MQ=255)
                                                                                                                                                   atatTCATTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCg                                                                                                                                  <  1:1726253/288‑1 (MQ=255)
                                                                                                                                                     atTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACTCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACTGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGTGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCaa                                                                                                                                                  <  1:676373/270‑1 (MQ=255)
                                                                                                                                                          gTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAAtt                                                                                                                           >  1:2748479/1‑288 (MQ=255)
                                                                                                                                                            gCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAac                                                                                                                                       >  1:762672/1‑274 (MQ=255)
                                                                                                                                                                tcatTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTtctctc                                                                                                                     >  1:2782225/1‑286 (MQ=255)
                                                                                                                                                                tcatTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctcgc                                                                                                                     >  1:2363084/1‑288 (MQ=255)
                                                                                                                                                                tcatTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctcgc                                                                                                                     >  1:2576788/1‑288 (MQ=255)
                                                                                                                                                                gcatTGCGCACACTTCCTGACGGATAGCCAGGCTGTGGCGCGGAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTgctcgct                                                                                                                    <  2:1405509/288‑1 (MQ=255)
                                                                                                                                                                     gcgcACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTgt                                                                                                                                                                                                       >  2:341605/1‑200 (MQ=255)
                                                                                                                                                                      cgcACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACg                                                                                                               <  2:2576788/288‑1 (MQ=255)
                                                                                                                                                                             ttCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccgccg                                                                                                                                                                                                                                                  >  1:2151787/1‑150 (MQ=255)
                                                                                                                                                                              tCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccgccg                                                                                                                                                                                                                                                  >  1:1412871/1‑149 (MQ=255)
                                                                                                                                                                                   aCGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCaaa                                                                                                                                                 >  1:1456991/1‑241 (MQ=255)
                                                                                                                                                                                     ggATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATGGCTCGCTCAACGTCAGGCTGAACTGGCg                                                                                               >  1:2511036/1‑289 (MQ=255)
                                                                                                                                                                                       aTAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccgccg                                                                                                                                                                                                                                                  <  1:1066227/140‑1 (MQ=255)
                                                                                                                                                                                       aTAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccgccg                                                                                                                                                                                                                                                  >  2:1066227/1‑140 (MQ=255)
                                                                                                                                                                                       aTAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAg                                                                                                                                                                                <  1:123456/206‑1 (MQ=255)
                                                                                                                                                                                       aTAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAac                                                                                                                                       >  2:2693879/1‑247 (MQ=255)
                                                                                                                                                                                       aTAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGt                                                                                             >  1:2408214/1‑289 (MQ=255)
                                                                                                                                                                                       aTAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATACAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAac                                                                                                                                       >  1:1749153/1‑247 (MQ=255)
                                                                                                                                                                                            cAGGCTGTCGCGCGTATTGCTGAACCGCACACGCAAGGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGACACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGc                                                                                        <  1:3060428/289‑1 (MQ=255)
                                                                                                                                                                                                 tGTAGGGCGTAGTGCTGAAACGCACACGAAGAGGAAAAGGGGCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAAtt                                                                                    <  2:2748479/288‑1 (MQ=255)
                                                                                                                                                                                                 tGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAAtt                                                                                    <  1:1925639/288‑1 (MQ=255)
                                                                                                                                                                                                    aGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATAGCTCGCTCAACGCAAGGCTGAACGGGCCGATTTGCAAGTggcg                                                                                >  2:84713/1‑289 (MQ=255)
                                                                                                                                                                                                     gcgcGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCccg                                                                                                                                                                                                                                                     >  2:1941734/1‑123 (MQ=255)
                                                                                                                                                                                                        cgTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAg                                                                                                                                                                                <  2:376119/189‑1 (MQ=255)
                                                                                                                                                                                                          tAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCaa                                                                                                                                            <  1:851429/223‑1 (MQ=255)
                                                                                                                                                                                                          tAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGACAGGGTTTCCTCCTGTGACGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCAAATAACCCACCGTTGAATTGCTCGCCCAACGGCAGGCTGAACTGGCGGTTTTGCAAGTGGCGCCTGa                                                                           >  2:1305077/1‑288 (MQ=255)
                                                                                                                                                                                                             tGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCt                                                                        >  1:1593370/1‑288 (MQ=255)
                                                                                                                                                                                                               cTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGc                                                                                                                                                                               <  1:1160137/183‑1 (MQ=255)
                                                                                                                                                                                                                  aaaCGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTCGCGGTTTTGCAATTCGCGACTGATCTGcgcg                                                                   <  1:1856608/288‑1 (MQ=255)
                                                                                                                                                                                                                   aaCGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCggg                                                                 <  1:2696159/289‑1 (MQ=255)
                                                                                                                                                                                                                       cactagaagatgtaaaGTTCCGTCTGGCGGGGCTAGCGTGAAGT‑TGAGATGGTGTTTCTCAGAACCCGAAAAGGCCTGTGCCAGCCCGGCAAAATGGCTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACTCCTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAGGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAg                                                              <  2:2782225/275‑1 (MQ=255)
                                                                                                                                                                                                                       cacaCGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAac                                                                                                                                       >  2:1984382/1‑215 (MQ=255)
                                                                                                                                                                                                                       cacaCGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCa                                                               <  2:2330110/287‑1 (MQ=255)
                                                                                                                                                                                                                                  cGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAacca                                                                                                                                     <  1:1398479/206‑1 (MQ=255)
                                                                                                                                                                                                                                        ggcctgcgggCGTGGCTAG‑GCAAAGTGTGGGATGCTGGTGCTCGCAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGa                                             <  2:1526669/280‑1 (MQ=255)
                                                                                                                                                                                                                                          ccGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGaaaa                                          >  1:1010898/1‑289 (MQ=255)
                                                                                                                                                                                                                                            gTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTtcctcc                                                                                                                                                                                                          >  1:232253/1‑127 (MQ=255)
                                                                                                                                                                                                                                            gTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGATCGCTCAACGTCAGGCTGAACTGGCGGTTGTTCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATc                                        >  1:163910/1‑289 (MQ=255)
                                                                                                                                                                                                                                                  ggTGGCCAGCGCCAGGT‑TGGGATGCCCGTTCTCAAAACCCCAACCAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACGct                                   <  2:2272814/287‑1 (MQ=255)
                                                                                                                                                                                                                                                     ggCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACGCTCTg                                <  1:1304163/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                      agaTGCTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCgaga                                                                                                                                                           <  2:1447889/149‑1 (MQ=255)
                                                                                                                                                                                                                                                                           cTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACg                                     <  2:1836171/262‑1 (MQ=255)
                                                                                                                                                                                                                                                                           cTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACGCTCTGTCCGGCAACACGttt                 <  2:3245961/282‑1 (MQ=255)
                                                                                                                                                                                                                                                                           cTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACGCTCTGTCCGGCAACACGttt                 >  1:3245961/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                           cTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACGCTCTGTCCGGCAACACGTTTAACATcc          >  1:918073/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                           cTCGTTCTCGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACAGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATT‑‑CGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACGCTCTGTCCGGCAACACGttt                 <  1:51181/280‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   cGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGaaa                                                                                                                                                         <  2:918541/138‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   cGAAACCCGAAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGTGAAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACGCTCTGTCCGGCAACACGTTTAACATCCAGCCACAg  >  1:995638/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                       
TGGACAAATTTTGCCGGAGGGGGAATGTGCCGGTGCAGTAAACCGGCACAGAGTGGCGGAATCAGACAGATAAGGTCATGGACTCAACAACCTCAATCCAGCCATGCTCACTGGCGATATCCTGGCCGTTTAACCAACGGCGCAGC‑ATATTCAGTGCCATCATTGCGCACACTTCCTGACGGATAGCCAGGCTGTAGCGCGTAGTGCTGAAACGCACACGCAGAGCGAAAGTGCCGTCTGGCGTGGCTAGCGCAAAGT‑TGAGATGCTCGTTCTCGAAACCGCTAACAGCCAGTGCCAGCCCGGCAAAATGGTTGGCCCGCCGTTCTGTAATCCAGTGCGCAGTTTGCGCCAGGGTTTCCTCCTGACTAGGAACCACTTCACACGCCAGCAATGGAGCACCTGCGCGAGAAAGTTGCAAAGCCAATAAACCACCGGTGAATTGCTCGCTCAACGTCAGGCTGAACTGGCGGTTTTGCAATTCGCGACTGATCTGCGCGGGCAGTCCTTCAGTGCCTTCGAAAATCACGCTCTGTCCGGCAACACGTTTAACATCCAGCCACAG  >  CP042583/1933629‑1934190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A