Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,965,174 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,965,1740GC98.9% 430.1 / NA 185intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base C (98/85);  total (98/87)
Fisher's exact test for biased strand distribution p-value = 2.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,965,1750CG99.5% 428.2 / NA 185intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (98/86);  minor base T (0/1);  total (98/87)
Fisher's exact test for biased strand distribution p-value = 4.70e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,965,1760TA100.0% 431.8 / NA 185intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (98/87);  total (98/87)

Only 100 of 185 total aligned reads displayed.

GGAAGCACGCCCTGCAGCGGCGGTACAATCAGTGCGCCAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGGCTGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCGCTCAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTCGGTCTGTACCAGCGCGGCAAAACCG  >  CP042583/1964896‑1965453
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                     
   aGCACGCCCTGCAGCGGCGGTACAATCAGTGCGCCAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTgcg                                                                                                                                                                                                                                                                             <  1:1628351/288‑1 (MQ=255)
   aGCACGCCCTGCAGCGGCGGTACAATCAGTGCGCCAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTgcg                                                                                                                                                                                                                                                                             <  1:1228640/288‑1 (MQ=255)
                  ggcggTACAATCAGTGCGCCAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGc                                                                                                                                                                                                                                                             >  1:1101517/1‑289 (MQ=255)
                    cggTACAATCAGTGCGCCAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGTCCACCAGGAAGCag                                                                                                                                                                                                                                                           >  1:1446159/1‑289 (MQ=255)
                            tcaggggggcAACGGAGGTGGGAAGGATCAGGAGGACAATGCGCGACAGGCAGTGAGTTACCCCTGTCACGGAGTGAGCGTGAATTTGTTCTTATCCGTGGAAGACGATGAGAATCATACGTAAGGTGGAGAGGGGGGGCATAAACGCACCGACCAGACCTGCCACCATCAGAGTGATATGACCATTCGCCGTCGAACCCGCGAGGATCTCATCCTTACTGAAGGAGCCCGCAGAGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATaagc                                                                                                                                                                                                                                                   <  2:1240705/280‑3 (MQ=255)
                            tCAGTGCGCCAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAAc                                                                                                                                                                                                                                                   <  1:1030794/289‑1 (MQ=255)
                                tGCGCCAACGGAGGTGGAAAGGATCAGCAGCACAAGCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGAACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAg                                                                                                                                                                                                                                                <  2:1118804/288‑1 (MQ=255)
                                tGCGCCAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGATCGAGGTCATAAACGCACCGACCAGACCTGACACCAACAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCGCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGACGCAGAGCTAAAACAGc                                                                                                                                                                                                                                               >  2:41753/1‑289 (MQ=255)
                                 gcgcCAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAg                                                                                                                                                                                                                                                <  1:776856/287‑1 (MQ=255)
                                    ccAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGaa                                                                                                                                                                                                                                           <  2:481112/289‑1 (MQ=255)
                                    ccAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTAGCCATCGCACCCGCGAGGATCTCATCCTGACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGAGCCGCGCCGCCCCCCAGGAAGCAGAGATAAAACAGAGGaa                                                                                                                                                                                                                                           >  2:419998/1‑289 (MQ=255)
                                     cAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGaa                                                                                                                                                                                                                                           <  1:65224/288‑1 (MQ=255)
                                        cGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGa                                                                                                                                                                                                                                       <  2:1043285/289‑1 (MQ=255)
                                                       tCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGcc                                                                                                                                                                                                                        <  2:1179051/289‑1 (MQ=255)
                                                            cgcaCAACCAGCGGCGGGCGTTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCt                                                                                                                                                                                                                   <  2:173040/288‑1 (MQ=255)
                                                               acaATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGa                                                                                                                                                                                                                >  1:1503300/1‑289 (MQ=255)
                                                                     aGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCTCGGTCGTAGACGCACCGACAAGAAATACCACCATCAGATTGACATGACCATTCGCCATCGCACCCGCGAGGAGCTCATCCTTACTGAAGAAGCCAGCAGTGACCAGCGGTAGTGCCGACAGGGATTCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGTAATAGATGTACGCagccagccaaccgtgacgctgt                                                                                                                                                                                                          >  2:1363970/1‑275 (MQ=255)
                                                                             gCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCTATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGAGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAGGGAGAGATAAAGCAGCGGAATAGAGTTACGCAGAACGACCATCTTGAAGatgttatgttac                                                                                                                                                                                                  >  1:1759947/1‑287 (MQ=255)
                                                                                    gTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATgg                                                                                                                                                                                            <  1:141547/288‑1 (MQ=255)
                                                                                    gTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATgg                                                                                                                                                                                            <  1:1426153/288‑1 (MQ=255)
                                                                                      taacccTTTCACCGCCGGGGCGTGAATTTTGTCTTTTTCCTGGAAGACACAGAAAAACATAACGAAGGTTTAGAGGCAGGTCCTAAACGCAACCAACCGACCTGTCCACATCCGGTTGATATGACCCTTCGCCATCGCACCCGCGAGGATCTCCTCCTTAACGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAg                                                                                                                                                                                         <  2:653605/286‑1 (MQ=255)
                                                                                       aCCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCAACAGGAAGCAGAGATAAACCAGCGGAATAGCTTTACGCAGACCGCCCAACCTGAAGATGTTCCGTTCGTGATGGccga                                                                                                                                                                                        >  2:141547/1‑286 (MQ=255)
                                                                                           cTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAg                                                                                                                                                                                    <  1:1625281/289‑1 (MQ=255)
                                                                                             ttCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCTAGGTCATAGACGCACCGACAAAACATGCCACCATCAGATTGATATGACCATTCTCAATCGCACCCGCGAGCATCTCATCCTTACTGAAGAAGCCCGCAGTGACCATCGGTAGTGCCGACCGTGCTGCGCCGCCACCCAGGAAGCAGAGAACAACCGTCGGAATAGTTTTACGCAGACCGCCCATCGTGAACATGTTCTGTTAGTGATGGCAGGACAGaa                                                                                                                                                                                  >  2:980341/1‑289 (MQ=255)
                                                                                             ttCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGaa                                                                                                                                                                                  >  1:579085/1‑289 (MQ=255)
                                                                                              tCACGGCGTGAGCTTGGATTTGTTCGTTTCCGTGGAAAACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATgg                                                                                                                                                                                            <  2:1609590/278‑1 (MQ=255)
                                                                                                aCGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGa                                                                                                                                                                               <  1:544261/289‑1 (MQ=255)
                                                                                                   gcgtgagcgtgaATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACgg                                                                                                                                                                            >  1:431956/1‑289 (MQ=255)
                                                                                                      tgagcgtgaATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACAAGCGGTAGTGCCGAAAGTGCTGCGCCGCCCACCAGGCAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGCATGACGGaa                                                                                                                                                                          >  1:517410/1‑288 (MQ=255)
                                                                                                       gagcgtgaATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAAcc                                                                                                                                                                        >  1:1072435/1‑289 (MQ=255)
                                                                                                        agcgtgaATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGaa                                                                                                                                                                                  >  1:1609590/1‑278 (MQ=255)
                                                                                                        agcgtgaATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCAACCATCAGATTGATATGACCATTCGCCATCGCACACTCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGACGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGAATTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACTGAACCg                                                                                                                                                                       >  1:1726624/1‑289 (MQ=255)
                                                                                                          cgtgaATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCACACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCgg                                                                                                                                                                      <  2:234056/288‑1 (MQ=255)
                                                                                                              aaTTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCTAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGcc                                                                                                                                                                 >  2:378915/1‑289 (MQ=255)
                                                                                                                        tttCCGTGGAAGACGATGAACATCATACGGAAGGTGTAGAGCGAGGTCATAGACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAAcagca                                                                                                                                                       <  2:836889/289‑1 (MQ=255)
                                                                                                                        tttCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAAcagca                                                                                                                                                       <  2:675160/289‑1 (MQ=255)
                                                                                                                              tGGAAGACGATGAAAATCATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCtt                                                                                                                                                 >  1:1282349/1‑289 (MQ=255)
                                                                                                                                     cGATGAAACTCATAGAGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGa                                                                                                                                           <  2:1072435/288‑1 (MQ=255)
                                                                                                                                               cATACGGAAGGTGTAGAGCGAGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGtc                                                                                                                                >  1:101047/1‑289 (MQ=255)
                                                                                                                                                                  gaggTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATcgccg                                                                                                             <  1:41753/287‑1 (MQ=255)
                                                                                                                                                                  gaggTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATcgccg                                                                                                             <  1:327416/287‑1 (MQ=255)
                                                                                                                                                                  gaggTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATcgccg                                                                                                             <  2:783433/287‑1 (MQ=255)
                                                                                                                                                                   aggTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGGACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATcgccg                                                                                                             <  1:7861/287‑1 (MQ=255)
                                                                                                                                                                   aggTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAAcagca                                                                                                                                                       <  2:644754/245‑1 (MQ=255)
                                                                                                                                                                   aggTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAAcagca                                                                                                                                                       >  1:644754/2‑246 (MQ=255)
                                                                                                                                                                   aggTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATATACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATcgccgc                                                                                                            >  1:701016/2‑289 (MQ=255)
                                                                                                                                                                    ggtggtAAACGCACCGACCAGAACTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGACTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGGTATGGACGGCCAGAATGACGGGCCCGGATGCCAGGGACAGCAGCGCTTTAAAGAACGCGTGGGTCACCAAGGTGAAAATCCCCGCa                                                                                                           >  2:122860/6‑289 (MQ=255)
                                                                                                                                                                      tCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCAt                                                                                                          >  1:918090/1‑288 (MQ=255)
                                                                                                                                                                      tCAGAAACGCACCGACCAGACCGGCCAACATCAGCTTGATATGGCCATTCGCCAGCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCAt                                                                                                          <  2:1133883/288‑1 (MQ=255)
                                                                                                                                                                       cATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATcc                                                                                                        <  2:1200021/289‑1 (MQ=255)
                                                                                                                                                                        aTAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATccc                                                                                                       >  1:283835/1‑289 (MQ=255)
                                                                                                                                                                         tAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAg                                                                                                                                                                                    >  2:305303/1‑211 (MQ=255)
                                                                                                                                                                                aCCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTg                                                                                                >  1:366516/1‑288 (MQ=255)
                                                                                                                                                                                           cttccaccaGCAGATGGATATGACCATTCGCCATCGCACCCGCGCGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAgcgc                                                                                    <  2:101047/286‑1 (MQ=255)
                                                                                                                                                                                           cggcaaccaccGGATTGAAAGGACCATTCGCCATGGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGAAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAgcgc                                                                                    <  2:1478980/284‑1 (MQ=255)
                                                                                                                                                                                              ccaccaTCAGATTGCTATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGCAGCCCGCAGAGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGACGAGATCAACCAGCGGAATAGATTTACGCCGACCGCCCAACCTGACGATGTTCTGTTCCGGACGGTAGGCCAGACTGGCGGAACCCGCTGCGCGGACCAGCACCCCCTCAAAGGACGCGCGGGTCAGCAAGGGGATGACCGCCGCATCCCATCCCACCACGCCCAGCGCGAg                                                                                 >  2:650022/1‑289 (MQ=255)
                                                                                                                                                                                              ccaccaTCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATcc                                                                                                        >  2:1839263/1‑266 (MQ=255)
                                                                                                                                                                                              ccaccaTCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATcc                                                                                                        <  1:1839263/266‑1 (MQ=255)
                                                                                                                                                                                              ccaccaTCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAg                                                                                 >  1:122210/1‑289 (MQ=255)
                                                                                                                                                                                              ccaccaTCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAg                                                                                 <  2:918090/289‑1 (MQ=255)
                                                                                                                                                                                               caccaTCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAgg                                                                                <  2:579085/289‑1 (MQ=255)
                                                                                                                                                                                                   aTCAGATTGATATGACCATTCGCCCTCGTACCCGCGAGGGTCTCCTCCTTACTGAAGACGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATCGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGAACGCCAAGCGCGAGGAACa                                                                            <  1:197743/289‑1 (MQ=255)
                                                                                                                                                                                                   aTCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAgcgc                                                                                    <  1:1346596/281‑1 (MQ=255)
                                                                                                                                                                                                   aTCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAACCGCCGCATCCCATGCCTGCACGCCAAGCGCCGGGAACa                                                                            >  2:1167273/1‑289 (MQ=255)
                                                                                                                                                                                                        aTTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGGCGCATCCCATGCCTGCACGGCAAGCGCGAGGAAAATGTAg                                                                       >  1:606271/1‑289 (MQ=255)
                                                                                                                                                                                                        aTTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTa                                                                        >  1:1549167/1‑288 (MQ=255)
                                                                                                                                                                                                            atatGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCaa                                                                   >  1:1690522/1‑289 (MQ=255)
                                                                                                                                                                                                                  ccATTCGCCATCGCACCCGCGAGGATCTCCTCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGc                                                             <  1:1862746/289‑1 (MQ=255)
                                                                                                                                                                                                                  ccATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGAtg                                                                                                                                                                                                           <  2:1300517/147‑1 (MQ=255)
                                                                                                                                                                                                                   cATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCt                                                            <  2:1263659/289‑1 (MQ=255)
                                                                                                                                                                                                                      tCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCAt                                                         >  1:647222/1‑289 (MQ=255)
                                                                                                                                                                                                                       cGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAGTCGCCGCATCCCATGACTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATg                                                        >  1:1311024/1‑289 (MQ=255)
                                                                                                                                                                                                                       cGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATg                                                        >  1:1694942/1‑289 (MQ=255)
                                                                                                                                                                                                                        gCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATgg                                                       <  1:1135226/289‑1 (MQ=255)
                                                                                                                                                                                                                          cATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTa                                                     <  1:378915/289‑1 (MQ=255)
                                                                                                                                                                                                                             cGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTagag                                                  >  1:1193101/1‑289 (MQ=255)
                                                                                                                                                                                                                             cGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTagag                                                  >  1:221741/1‑289 (MQ=255)
                                                                                                                                                                                                                                  ccGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAAATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGc                                             <  1:980341/289‑1 (MQ=255)
                                                                                                                                                                                                                                        ggATCTCATACTTACTGAAGAAGCCCTCAGGGACCAGCGGTAGGGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGaa                                        <  2:71209/288‑1 (MQ=255)
                                                                                                                                                                                                                                          aTCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCt                                                            <  1:259392/266‑1 (MQ=255)
                                                                                                                                                                                                                                          aTCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAac                                       <  1:402079/287‑1 (MQ=255)
                                                                                                                                                                                                                                             gactCCGTACTGAAGAAGCCCGCAGTAGCCAGCGGTAGTGCGGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGtt                                  <  2:192477/286‑1 (MQ=255)
                                                                                                                                                                                                                                                  cTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATg                             <  1:1601702/289‑1 (MQ=255)
                                                                                                                                                                                                                                                    tACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCCCGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGGTTGATGTc                           >  1:1394019/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    tACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTagag                                                  >  1:450632/1‑266 (MQ=255)
                                                                                                                                                                                                                                                    tACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTc                           >  1:721166/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    tACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTc                           >  2:1576214/1‑289 (MQ=255)
                                                                                                                                                                                                                                                     tcTGAACAGGCCCGCAGTGACGAGAGCTAGTGCCGACAGTGCTGCGCCGCCCACCAGGGAGCAGAGATAAACCAGCGGAATAGAGTTACGCAGACCGCCCATCTTGAAGATGTTCGGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTCg                          <  2:1503300/288‑1 (MQ=255)
                                                                                                                                                                                                                                                     aCTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTCg                          <  2:366516/289‑1 (MQ=255)
                                                                                                                                                                                                                                                       tGAAGAAGCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTCGGt                        <  1:1243766/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         aagaagCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTCgg                         >  2:206071/1‑286 (MQ=255)
                                                                                                                                                                                                                                                         aagaagCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTCgg                         >  1:1003984/1‑286 (MQ=255)
                                                                                                                                                                                                                                                              gCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATgg                                                       <  2:1189726/251‑1 (MQ=255)
                                                                                                                                                                                                                                                              gCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATgg                                                       >  1:1189726/1‑251 (MQ=255)
                                                                                                                                                                                                                                                              gCCCGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTCGGTCTGTAcc                 >  2:178471/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 cGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAAcgcg                                                                                                                                      >  1:287274/1‑169 (MQ=255)
                                                                                                                                                                                                                                                                 cGCAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAAcgcg                                                                                                                                      <  2:287274/169‑1 (MQ=255)
                                                                                                                                                                                                                                                                   cAGTGACCAGCGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATc                                                                 >  2:1111744/1‑236 (MQ=255)
                                                                                                                                                                                                                                                                           aGCGGTAGTGGCGACAGGGCTGCGCCGCCCAGAAGGTACAAGAGATAAACCAGCGGAATAGATTTACGCAGACAGCCCATCTGGAAGTTGTTATGTTCGTGATGGCAGGCCAGAATGACGGAGACGGATGCCAGGAACAGTAGCGCTTTAAAGATCGCGTGGGTCATCAAGTAGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGCGGAACATATAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTCGGTCTGTACCAGCGCGGCAAAAc    <  2:1422311/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             cGGTAGTGCCGACAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATcgccg                                                                                                             <  1:940833/182‑1 (MQ=255)
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                     
GGAAGCACGCCCTGCAGCGGCGGTACAATCAGTGCGCCAACGAAGGTGGAAAGGATCAGCAGCACAATCAGCGGCAGGCTGTGAGTTACCCCTTTCACGGCGTGAGCGTGAATTTGTTCTTTTCCGTGGAAGACGATGAAAATCATACGGAAGGTGTAGAGGCTGGTCATAAACGCACCGACCAGACCTGCCACCATCAGATTGATATGACCATTCGCCATCGCACCCGCGAGGATCTCATCCTTACTGAAGAAGCCCGCAGTGACCAGCGGTAGTGCGCTCAGTGCTGCGCCGCCCACCAGGAAGCAGAGATAAACCAGCGGAATAGATTTACGCAGACCGCCCATCTTGAAGATGTTCTGTTCGTGATGGCAGGCCAGAATGACGGAACCGGATGCCAGGAACAGCAGCGCTTTAAAGAACGCGTGGGTCATCAAGTGGAAAATCGCCGCATCCCATGCCTGCACGCCAAGCGCGAGGAACATGTAGCCAATCTGGCTCATGGTAGAGTAAGCGAGAACACGTTTGATGTCGGTCTGTACCAGCGCGGCAAAACCG  >  CP042583/1964896‑1965453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A