Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 591,801 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583591,8010AT99.4% 754.2 / NA 318intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base T (169/146);  minor base G (0/2);  total (170/148)
Fisher's exact test for biased strand distribution p-value = 2.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583591,8020CG99.4% 748.1 / ‑6.0 318intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (168/148);  minor base T (2/0);  total (170/148)
Fisher's exact test for biased strand distribution p-value = 5.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01
*CP042583591,8030TA99.4% 750.0 / NA 318intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (168/148);  minor base C (2/0);  total (170/148)
Fisher's exact test for biased strand distribution p-value = 5.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 318 total aligned reads displayed.

CTGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGACTAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGGCTACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCACTGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTGCCCGCTGCGGTGCGACTT  >  CP042583/591525‑592081
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                      
ctGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGTTAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGaa                                                                                                                                                                                                                                                                              >  2:213230/1‑289 (MQ=255)
ctGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATTAATTTGTGAAGTCTGATaa                                                                                                                                                                                                                                                                              >  1:1488644/1‑289 (MQ=255)
ctGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAATTCTGAGaa                                                                                                                                                                                                                                                                              >  2:1059841/1‑289 (MQ=255)
ctGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGaa                                                                                                                                                                                                                                                                              >  2:488232/1‑289 (MQ=255)
ctGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGaa                                                                                                                                                                                                                                                                              >  1:1117330/1‑289 (MQ=255)
ctGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGaa                                                                                                                                                                                                                                                                              >  1:795113/1‑289 (MQ=255)
ctGCCAGGGTTTACAATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGAGCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGACAACAGC‑GGATAGAACGGGCTGGTGGATGCGTGCATCATAAAGGCGTGGTTCATGCGTTGGTGTGGTACATCACGCTGTTGCCCTTAGATGTGGCGTGT‑TTTTTTATTAATTTGTGAAGTCTGAGaa                                                                                                                                                                                                                                                                              >  2:1245832/1‑289 (MQ=255)
   ccAGGGTTTACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATTTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGaaaa                                                                                                                                                                                                                                                                            >  1:909846/1‑288 (MQ=255)
           tACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGCTTGCGTGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCCTACAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTCTGAGGTGGC‑TGTCTTTTTTATGAATTTTTGAATTCTGAGAAACACCAg                                                                                                                                                                                                                                                                       >  2:1612825/1‑285 (MQ=255)
            aCCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCtgt                                                                                                                                                                                                                                                                  <  2:1303391/289‑1 (MQ=255)
                tCCACCAGTTCAGGTACGAACTGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTgttgtt                                                                                                                                                                                                                                                              <  1:1548803/289‑1 (MQ=255)
                   accaGTTCAGGTACGAACGGACGAATATGCCGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTAt                                                                                                                                                                                                                                                           >  1:1907117/1‑289 (MQ=255)
                       gTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGcac                                                                                                                                                                                                                                                       >  1:274678/1‑289 (MQ=255)
                        gtaaGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATACTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGTAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGcaca                                                                                                                                                                                                                                                      >  1:476247/4‑289 (MQ=255)
                         tCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGcaca                                                                                                                                                                                                                                                      <  2:380988/288‑1 (MQ=255)
                                  aaCGGACGACTATGATGACAGTTATAGCGTATCAGTTTGCCGGCCTTAATGCCATTTACCACACAATCCATCCACATATCACGACCGCTGACACCTTCATGCACTTTGGTGTTGACACCCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCCTCCTAAAGGCGTGGTTCATGCGTTTGTGATGTACAGTACGCTGCTGTCCTTTGCTGGTGC‑TTGCTTTTTTATGATTTTGATCACGCTGGGAAAAACCAGCCTGTTCTTTATGcaccattgtgtga                                                                                                                                                                                                                                             >  2:1250043/1‑278 (MQ=255)
                                  aaCGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGATGTCTGAGAATAACCAGCCTGTTGTTTATGCACCGATTGCGTaa                                                                                                                                                                                                                                            >  2:303954/1‑289 (MQ=255)
                                       aCGAATTTGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAg                                                                                                                                                                                                                                        <  1:1748991/288‑1 (MQ=255)
                                       aCGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAg                                                                                                                                                                                                                                        <  1:1733283/288‑1 (MQ=255)
                                                 tGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGa                                                                                                                                                                                                                              >  1:869341/1‑288 (MQ=255)
                                                   aCAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCg                                                                                                                                                                                                                           >  1:641531/1‑289 (MQ=255)
                                                     aGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGt                                                                                                                                                                                                                          >  1:1528341/1‑288 (MQ=255)
                                                        tATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATTAATTTGTGAAGTCTGAGAACAACCAGCCTGTTGTTTATGCCCAGATTGCGTAACCAGAATACCCGGATCGTtctc                                                                                                                                                                                                                      >  2:222078/1‑289 (MQ=255)
                                                        tATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGtt                                                                                                                                                                                                                         <  1:1168958/286‑1 (MQ=255)
                                                        tATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGt                                                                                                                                                                                                                          <  2:329483/285‑1 (MQ=255)
                                                        tATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTtct                                                                                                                                                                                                                       <  1:761841/288‑1 (MQ=255)
                                                         aTCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCGTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCATAGATTGCGTAACCAGAATCCCCGGACCGTTCTCa                                                                                                                                                                                                                     >  2:1840103/1‑289 (MQ=255)
                                                           cGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCAtt                                                                                                                                                                                                                   <  2:795113/289‑1 (MQ=255)
                                                               gATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTa                                                                                                                                                                                                                                                            >  1:1583650/1‑244 (MQ=255)
                                                                    gTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCa                                                                                                                                                                                                           >  1:1058018/1‑288 (MQ=255)
                                                                        gCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAAc                                                                                                                                                                                                      >  2:502820/1‑289 (MQ=255)
                                                                             cATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCg                                                                                                                                                                                                  <  1:1040382/288‑1 (MQ=255)
                                                                                tAATGCCATTTACCCCCCACTCCATCCACATATTACCACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGCGGGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCggcg                                                                                                                                                                                               <  2:1558792/289‑3 (MQ=255)
                                                                                 aaTGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCggcgaa                                                                                                                                                                                             <  2:1576049/289‑5 (MQ=255)
                                                                                      cATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCggcgaacagt                                                                                                                                                                                         <  1:1300614/288‑9 (MQ=255)
                                                                                        tttACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTcc                                                                                                                                                                                       >  2:692354/1‑288 (MQ=255)
                                                                                              acacaATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCcatca                                                                                                                                                                                <  1:692354/289‑1 (MQ=255)
                                                                                               cacaATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCcatca                                                                                                                                                                                >  1:390567/1‑288 (MQ=255)
                                                                                                   atccatccACATATTACGACCGCTGACCACGTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GTATAGAACGGGCTGGTGGAGGCGTGCATCGTAAAGGCGTTGTTCATGCGTTTGTGCGGTACATTACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGACAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATATCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGa                                                                                                                                                                           <  2:635230/289‑1 (MQ=255)
                                                                                                    tccatccaCATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTa                                                                                                                                                                                                                  <  2:1144828/249‑1 (MQ=255)
                                                                                                       atccaCATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATaa                                                                                                                                                                       >  1:456878/1‑289 (MQ=255)
                                                                                                         ccaCATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCcatca                                                                                                                                                                                >  1:1426763/1‑278 (MQ=255)
                                                                                                              tatTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTc                                                                                                                                                                >  2:262422/1‑289 (MQ=255)
                                                                                                                  aCGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAg                                                                                                                                                            <  1:325964/289‑1 (MQ=255)
                                                                                                                  aCGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAg                                                                                                                                                            <  2:455749/289‑1 (MQ=255)
                                                                                                                   cGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAg                                                                                                                                                            >  2:115158/1‑288 (MQ=255)
                                                                                                                         cTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGca                                                                                                                                                                                                                                                        <  2:1206873/190‑1 (MQ=255)
                                                                                                                         cTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTaa                                                                                                                                                                                                                                            >  2:580237/1‑202 (MQ=255)
                                                                                                                         cTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCggcg                                                                                                                                                                                               >  1:186552/1‑245 (MQ=255)
                                                                                                                         cTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCggcg                                                                                                                                                                                               <  2:186552/247‑3 (MQ=255)
                                                                                                                         cTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGAccc                                                                                                                                                     >  1:293920/1‑289 (MQ=255)
                                                                                                                         cTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGAccc                                                                                                                                                     >  1:350127/1‑289 (MQ=255)
                                                                                                                         cTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGAcc                                                                                                                                                      >  2:707174/1‑288 (MQ=255)
                                                                                                                             cacCTTCATGCATTTTGGCGTTTCTATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTTTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATg                                                                                                                                                  <  1:1698271/288‑1 (MQ=255)
                                                                                                                                      gCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCaaa                                                                                                                                        <  1:707174/289‑1 (MQ=255)
                                                                                                                                      gCATTGTGGCGTAGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGGGGATCATAAAGGCGTTGTTCATCCGTTTGTGAGGTACATAATGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAGACTGTTCATAGCCGACCCATGCTGAGTCaaa                                                                                                                                        <  2:973729/289‑1 (MQ=255)
                                                                                                                                          tttGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAgg                                                                                                                                    >  1:515176/1‑289 (MQ=255)
                                                                                                                                           ttGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGGGGAGGCGTGCATCATAAAGTCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGa                                                                                                                                   <  2:1352721/289‑1 (MQ=255)
                                                                                                                                                   gATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAACAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTc                                                                                                                            >  2:1805922/1‑288 (MQ=255)
                                                                                                                                                              cGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCg                                                                                                                                                                                                                                               <  1:1739627/162‑1 (MQ=255)
                                                                                                                                                              cGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCg                                                                                                                                                                                                                                               >  2:1739627/1‑162 (MQ=255)
                                                                                                                                                               ggCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGAAGACCa                                                                                                               >  1:1252985/1‑289 (MQ=255)
                                                                                                                                                                  aaaCAGG‑GGGTAGAACGTGGTGGTGGAGTGGTGCTGCATAAAGGCGTTGTTCATGCGGTTGTGCGGTACATAACGCTGTTGCCCGATGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTGTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCAGTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAAtt                                                                                                            <  2:1488644/289‑1 (MQ=255)
                                                                                                                                                                          ggATAGAACGGGCTGGGGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTa                                                                                                         <  1:962280/285‑1 (MQ=255)
                                                                                                                                                                                aaCGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACtt                                                                                               >  1:591739/1‑289 (MQ=255)
                                                                                                                                                                                 aCGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATaaa                                                                                                                                                                      >  2:1001785/1‑217 (MQ=255)
                                                                                                                                                                                 aCGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATaaa                                                                                                                                                                      <  1:1001785/217‑1 (MQ=255)
                                                                                                                                                                                        ggtggAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTca                                                                                                                           <  1:1558032/253‑1 (MQ=255)
                                                                                                                                                                                          tggAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGtt                                                                                     >  2:111255/1‑289 (MQ=255)
                                                                                                                                                                                          tggAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGCTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATTAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATTACCAATTTTACCCACCACtgtcctggcgtt                                                                                     >  2:1721674/1‑278 (MQ=255)
                                                                                                                                                                                          tggAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCATTTGATGTGGC‑TGTCTTTTGTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAATCAGAATACCCGGAGCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTACGCCAGCATCGGAATAAACTGTTCATAGCCGACCAATGCTGAGTCAAACAGGATGTAGGTACACAGATGACCAAGTTGATCAACAACTTGGCGGGTGtt                                                                                     >  2:285791/1‑289 (MQ=255)
                                                                                                                                                                                                   gcttcatAAGGGCGTGTTTCCTGCTTTTGTGCGGTACATAACGCTTTTGACCTTTGATGTGGT‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCATGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGt                                                                            <  2:850593/286‑1 (MQ=255)
                                                                                                                                                                                                   gCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGt                                                                            <  1:1203987/289‑1 (MQ=255)
                                                                                                                                                                                                    catcatAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCaa                                                                                                                                                                                                       <  1:109499/165‑1 (MQ=255)
                                                                                                                                                                                                    cagcatAAAGTCGTTGTTCATGCGTTTTTGCGGTAACTAACGCTGTTGGCCTTTGATGTGGC‑TTTCTTTTTTATGAATTTGTGAAGGCTGATAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTTTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGt                                                                            <  2:771617/285‑1 (MQ=255)
                                                                                                                                                                                                     atcatAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTCTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTa                                                                           <  1:724965/288‑1 (MQ=255)
                                                                                                                                                                                                         tAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGAGGTAGTCACACAGATGACCAATTTTATTCACCACTTGGCGGGCGTTATAAATCGTACcgt                                                                       >  1:54989/1‑288 (MQ=255)
                                                                                                                                                                                                           aaGTCGTTGGTCATGCGTTTTGGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAGAAACAAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATCCCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACcgtcgt                                                                    <  2:1776110/289‑1 (MQ=255)
                                                                                                                                                                                                            aGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTTTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACCCAGCTGAACAACTTTATCCACCACTTGACGGGCGTTTCAAATCGTACCGTCGTa                                                                   >  2:833128/1‑289 (MQ=255)
                                                                                                                                                                                                                 ttgttCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAAtt                                                                                                            <  1:828175/243‑1 (MQ=255)
                                                                                                                                                                                                                 ttgttCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTg                                                               >  2:920262/1‑288 (MQ=255)
                                                                                                                                                                                                                  tgttCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGc                                                              <  1:1634371/288‑1 (MQ=255)
                                                                                                                                                                                                                   gttCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAACCCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCt                                                            <  1:213230/289‑1 (MQ=255)
                                                                                                                                                                                                                        tGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACcgtcgt                                                                    <  2:464611/276‑1 (MQ=255)
                                                                                                                                                                                                                        tGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCTTCGTAGGGTCCTAACtt                                                       >  2:1877570/1‑288 (MQ=255)
                                                                                                                                                                                                                              tgtgCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACcgtcgt                                                                    >  1:1366194/1‑270 (MQ=255)
                                                                                                                                                                                                                                    gTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGa                                            <  1:2418/288‑1 (MQ=255)
                                                                                                                                                                                                                                     tACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAg                                           >  1:1115777/1‑288 (MQ=255)
                                                                                                                                                                                                                                      acctAACGCTGTTGTCCGTTGATTTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAgg                                          <  2:1909673/285‑1 (MQ=255)
                                                                                                                                                                                                                                               tGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATaaa                                                                                                                                                                      <  2:1498005/155‑1 (MQ=255)
                                                                                                                                                                                                                                               tGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGAc                                >  2:1638667/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 ttGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGa                              >  1:1469520/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 ttGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGa                              >  1:573042/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 ttGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCAGCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTAACACAGATGACCAATTTTATCCAGCAATTTGCGGGCGTTAGAAATCGTACCGTCGTAGGTGCCTAAGTGAATTACAGCGAGCAGAAAGGGACGa                              >  2:714413/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   gCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGc                            <  2:536570/289‑1 (MQ=255)
                                                                                                                                                                                                                                                   gCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGc                            <  2:869894/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         tGATGTGGC‑TGTCTTTTTTATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTAcc                                                                         <  1:1897763/238‑1 (MQ=255)
                                                                                                                                                                                                                                                                         ttttATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTGCCCGCTGCGGTGc       <  1:402741/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                         ttttATGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAA‑CAGAATACCCGGATCGGTCTCATTAAGATCCAGCAACAGCGGCCAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTTGCGGGCGTTATAAATCGGACCGTCAGAGGTGCCTAACTGAATCAAAGCGAGGCGGAAAGGACGAGGCCCTTTTGCCCGGTggcgttcc      >  2:167899/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                              tGAATTTGTGAAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTGCCCGCTGCGGTGCGACtt  <  2:1369333/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                      
CTGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATTAATGCCATTTACCACACAATCCATCCACATATTACGACCGCTGACACCTTCATGCATTTTGGCGTTGATATTCAGTGCGGCAAACAGC‑GGATAGAACGGGCTGGTGGAGGCGTGCATCATAAAGGCGTTGTTCATGCGTTTGTGCGGTACATAACGCTGTTGCCCTTTGATGTGGC‑TGTCTTTTTTATGAATTTGACTAGTCTGAGAAAAACCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGGCTACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCACTGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTGCCCGCTGCGGTGCGACTT  >  CP042583/591525‑592081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A