Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 801,680 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583801,6800AT99.2% 566.5 / NA 248intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base T (103/141);  total (105/143)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01
*CP042583801,6810GC98.8% 565.7 / NA 248intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/3);  new base C (105/139);  total (105/143)
Fisher's exact test for biased strand distribution p-value = 2.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583801,6820CG99.2% 574.7 / NA 248intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base G (103/141);  total (105/143)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 248 total aligned reads displayed.

GCAAGTACTAACTCAGGCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGAGC‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGC  >  CP042583/801400‑801960
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
  aaGTACTAACTCAGGCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGTTCTGATTTCCGCACTGCATAAGTCG‑GTACGTgg                                                                                                                                                                                                                                                                                >  1:1403583/1‑289 (MQ=255)
  aaGTACTAACTCAGGCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACCCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTgg                                                                                                                                                                                                                                                                                <  1:1147840/289‑1 (MQ=255)
               ggCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGAt                                                                                                                                                                                                                                                                   >  1:1738334/1‑289 (MQ=255)
               ggCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTGTACGACCTGATCTCCGCACTGCATAAGTCC‑GTACGTGGTAGCGCAcca                                                                                                                                                                                                                                                                      >  2:118215/1‑285 (MQ=255)
               ggCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGGGAATGGCGACGCGCGCCGGGCGTTAACTACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGCCCTGAAGCCCGAATTACTGACCGAAATCGCCGGTGAACGTAGCCCCCGCTTTGATAACAACGGCGAACGCTTTTACGCTCTGATTTCCGCACTGCATATGCCG‑GTACGTGGTATCGCAccctca                                                                                                                                                                                                                                                                   >  2:1860996/1‑286 (MQ=255)
                 cGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATg                                                                                                                                                                                                                                                                  <  1:1024404/288‑1 (MQ=255)
                    tGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcgg                                                                                                                                                                                                                                                               <  1:698417/288‑1 (MQ=255)
                     ggAAGACAAAACCCGTGGCTATTGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  1:1642647/289‑1 (MQ=255)
                     ggAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  2:1856362/289‑1 (MQ=255)
                     ggAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  1:1677435/289‑1 (MQ=255)
                     ggAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggc                                                                                                                                                                                                                                                              >  1:343250/1‑288 (MQ=255)
                     ggAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATAATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  2:251895/289‑1 (MQ=255)
                      gAAGACACAACCGGTGGGTATGGTGGTCAGGATATGGTTCGGCCGGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  2:919506/288‑1 (MQ=255)
                      gAAGACAAAACCCTGGGCTATCTGGGTCGTGTTATTGTTCGGCCAGAAGAATCCCGACGCGCCATTGCTGAACTGGTGAAGGGCGACGCGCGCCGGGCGTTAAATACGATGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  2:1395359/288‑1 (MQ=255)
                       aaGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  1:1138066/287‑1 (MQ=255)
                       aaGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  2:446193/287‑1 (MQ=255)
                              aaCCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTTCGATATGAATTCCGCACTGCATAAGTCG‑GTACGTGGTAGAGCCACCGATGCGGCGCTGTACTgg                                                                                                                                                                                                                                                    >  1:522971/1‑289 (MQ=255)
                              aaCCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTgg                                                                                                                                                                                                                                                    >  1:194132/1‑289 (MQ=255)
                              aaCCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTgg                                                                                                                                                                                                                                                    >  1:1069769/1‑289 (MQ=255)
                                    tGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGGCCTTCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATgc                                                                                                                                                                                                                                               >  2:1361234/1‑288 (MQ=255)
                                        tATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGa                                                                                                                                                                                                                                           <  1:1542021/288‑1 (MQ=255)
                                               gtCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAAttctta                                                                                                                                                                                                                                    >  1:1467696/1‑288 (MQ=255)
                                               gtCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAAttatta                                                                                                                                                                                                                                    >  2:1331465/1‑288 (MQ=255)
                                               gtCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAAttatta                                                                                                                                                                                                                                    >  2:1788052/1‑288 (MQ=255)
                                                 cAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTAcc                                                                                                                                                                                                                                  >  1:746302/1‑288 (MQ=255)
                                                          gTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCg                                                                                                                                                                                                                        <  1:1598213/289‑1 (MQ=255)
                                                            tCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGa                                                                                                                                                                                                                       <  1:150467/288‑1 (MQ=255)
                                                            tCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGAt                                                                                                                                                                                                                      <  1:650384/289‑1 (MQ=255)
                                                            tCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGAt                                                                                                                                                                                                                      <  2:343250/289‑1 (MQ=255)
                                                            tCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGAt                                                                                                                                                                                                                      <  1:13549/289‑1 (MQ=255)
                                                            tCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATAGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGAt                                                                                                                                                                                                                      <  1:1349927/289‑1 (MQ=255)
                                                              tGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATcc                                                                                                                                                                                                                    >  1:787319/1‑289 (MQ=255)
                                                                ccAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGAt                                                                                                                                                                                                                      <  1:1318645/285‑1 (MQ=255)
                                                                        aaCACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCAcc                                                                                                                                                                                                                                                                       <  2:1225103/228‑1 (MQ=255)
                                                                        aaCACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCAcc                                                                                                                                                                                                                                                                       >  1:1225103/1‑228 (MQ=255)
                                                                             gacgGGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCGGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTcgcgcg                                                                                                                                                                                                     <  2:1569127/289‑1 (MQ=255)
                                                                               cgcgCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGGATTATTACCGCTGGTGGCGAGCCGTTATATGTCGCGCGTc                                                                                                                                                                                                   >  1:734258/1‑289 (MQ=255)
                                                                                        gcggAACTGGTGAAGGGCAGCCGGCGCCGGGCGTTAAAGACGCTGGAAAGAATGGAGGATAGGGCCGAAGTCGATGATAGCGTTAAGCGGGTCCTGAAGCCTGAATGACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGTCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGccattcac                                                                                                                                                                                          <  2:149805/286‑8 (MQ=255)
                                                                                            aaCTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGAt                                                                                                                                                                                      >  1:39540/1‑289 (MQ=255)
                                                                                              cTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGAtt                                                                                                                                                                                     >  1:1836600/1‑288 (MQ=255)
                                                                                                 gTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCg                                                                                                                                                                                  >  1:1887918/1‑288 (MQ=255)
                                                                                                 gTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGt                                                                                                                                                                                 >  2:1717789/1‑289 (MQ=255)
                                                                                                 gTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGAGGCGCTGTACTGGTATGCGCGAAGTATTACCGCGGGTGGCGATCCGGTATATGTCGCCCGGCGCCGGCTGGCGCTTGcc                                                                                                                                                                                  >  2:573638/1‑287 (MQ=255)
                                                                                                     agggaggcgcgagCAGGGCTGTAAATATGCTGGGAGTGATGGCGGATAGGGCGGAAGTCGACGATAGCGGTAAGCGGGTCCTGAGTCCTGAATTACTGACCGAAAGCGCCGGTGACAGTAGCGCCCGCTTTGGTAACAAAGGCGATCGCTTTTACGATCTGATGTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCGGTACGGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGGCTGGCGATTGCGTCTg                                                                                                                                                                              <  2:215048/281‑1 (MQ=255)
                                                                                                         cGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             >  1:377062/1‑205 (MQ=255)
                                                                                                         cGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  2:377062/205‑1 (MQ=255)
                                                                                                          gACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGAc                                                                                                                                                                         <  1:299788/288‑1 (MQ=255)
                                                                                                          gACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGAc                                                                                                                                                                         <  1:279519/288‑1 (MQ=255)
                                                                                                          gACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGAc                                                                                                                                                                         <  1:1288207/288‑1 (MQ=255)
                                                                                                           aCGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGt                                                                                                                                                                                                                                                   >  1:124751/1‑213 (MQ=255)
                                                                                                                           aaaaACGATGGATAGGCTGCCGGATATGGCGGACGTCGATGATAGCGTTAAGCGGTTCCTGAAGCCGGAATTACTTACCGAAGTCGCCGGTAAGCGTCGCGCCCGCTTTTATAAAAAAGGCGATCGCTTTTACTATTTGATTTCCGCACTGCATAAGTCG‑GTACGTGTTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCa                                                                                                                                                       <  2:522971/289‑1 (MQ=255)
                                                                                                                                 gCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  1:1811409/181‑1 (MQ=255)
                                                                                                                                 gCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCTTCGCTGTCTGGCGATTGCGTCTGAAGCCGTCGGTAATGCCGATCCACGGGCg                                                                                                                                                 >  2:749075/1‑289 (MQ=255)
                                                                                                                                 gCTGGAAAGGTAGGGAGATATGGCCGAAGTGGATGAGAGCGGTACGCGGGTCCTGAAGCCTGAATTACGGACCGAAATCGCCGGTGAACGTAGCGCCCGATTTGATAACAAAGGCGATCGCTTTGACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGc                                                                                                                                                  <  2:848559/288‑1 (MQ=255)
                                                                                                                                               cGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCCCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCTGGTGGCAAt                                                                                                                                   >  1:1703645/1‑289 (MQ=255)
                                                                                                                                                      ggCCGAAGGCGGTGATCGCGGTAAGCGGGTCCCGAAGCCTGAAGTACTGACCGAAATCGCAGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGGGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGc                                                                                                                             <  2:397428/288‑1 (MQ=255)
                                                                                                                                                          gAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTggg                                                                                                                        <  1:439313/289‑1 (MQ=255)
                                                                                                                                                           aaGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGa                                                                                                                       >  1:1710009/1‑289 (MQ=255)
                                                                                                                                                            aGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGa                                                                                                                       <  1:1623945/288‑1 (MQ=255)
                                                                                                                                                            aGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGAt                                                                                                                      >  1:943452/1‑289 (MQ=255)
                                                                                                                                                                     tAGGGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAACTCGCCGGTAAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACGGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTAc                                                                                                              <  2:194132/288‑1 (MQ=255)
                                                                                                                                                                             aGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGcgcg                                                                                                                                                                                                                                            >  1:956781/1‑154 (MQ=255)
                                                                                                                                                                               agtgcacTGAAGCCTGGAGTACTGAGCAAACTCGCAGGTGAACGTAGCGCCCGCTTTGATACCGACGGCGATCGCTTTTACGTTCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGc                                                                                                    <  2:685356/282‑1 (MQ=255)
                                                                                                                                                                                gggTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGccc                                                                                                  >  1:864591/1‑289 (MQ=255)
                                                                                                                                                                                 ggTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGTTCGCTTTTACGATCTGATTTCCGCACTGCATACGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGccc                                                                                                  <  2:1305660/288‑1 (MQ=255)
                                                                                                                                                                                  gTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCcg                                                                                                 >  1:1188541/1‑288 (MQ=255)
                                                                                                                                                                                   tCCTGAAGCCTGAATTACTGACCGAAATCTCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCcgg                                                                                                <  1:573638/288‑1 (MQ=255)
                                                                                                                                                                                   tCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCcgg                                                                                                <  1:1203036/288‑1 (MQ=255)
                                                                                                                                                                                            cTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGa                                                                                      >  2:594641/1‑289 (MQ=255)
                                                                                                                                                                                             tGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             <  2:280589/121‑1 (MQ=255)
                                                                                                                                                                                                      gACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTTCTTTACTCGCGTTGCCCCGGCCGAAGGTGGACGCCCCCtt                                                                            >  2:1745053/1‑289 (MQ=255)
                                                                                                                                                                                                       aCCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGCTGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGCGGCAATTGCGGCCTGGGATTGCTTTCTTCACGTTCGGCCGGCGGAAGGTGATAGCGCCAtc                                                                            >  2:1704463/1‑287 (MQ=255)
                                                                                                                                                                                                       aCCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCGCGGCGGAGGGAGACCGCGCCagt                                                                            >  2:721779/1‑286 (MQ=255)
                                                                                                                                                                                                       aCCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCACTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCAtt                                                                            >  2:1118910/1‑288 (MQ=255)
                                                                                                                                                                                                           aaaTCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGTGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCa                                                                       >  1:1208549/1‑289 (MQ=255)
                                                                                                                                                                                                            aaTCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCTATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCa                                                                       <  1:1803045/288‑1 (MQ=255)
                                                                                                                                                                                                               cgtaggTGAACGGAGCGCGCGCTTTGATAGCAAATGCTTTCGCTTTTACGATCTGATTTACGCACGGGAGATGTCG‑GTGCGTGGTCGCGCACCGGATTCGGCGCTGTACTGGTAGGCGCGAATTATTACCGCGGGGGGGGGTCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGCTTGCTTTACTCGCGTTGGCGCGGCGGAAGGTGAACGCGCCATTGCTCAgg                                                                     <  2:1453298/283‑1 (MQ=255)
                                                                                                                                                                                                                    gggatcGTAGCTCCCNCTTTGATACGAAAGGGGAGCGCTGTTCAGCTCTGATTACCGACCTGAATAAGTCG‑GTAGGTGTGAGCGGACCCGANGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGGCTGAAGACGTCGGTAATGCCGATCCACGGGCGATNCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                               <  2:1194688/283‑1 (MQ=255)
                                                                                                                                                                                                                    gTGAACGTTGGTCCGGATTTGATAACAAAGGCGATCGCTTTTACGATCTGATTGCCGCACTGCATAAGTGG‑GTACGTGGTAGGGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGCTCCGTTAGATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTg                                                               <  2:434686/288‑1 (MQ=255)
                                                                                                                                                                                                                    gTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGa                                                                  <  1:1421571/285‑1 (MQ=255)
                                                                                                                                                                                                                              cgcCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGGTTGCTTTACTCGCGTTGGCCCGGCGGAAGGGGAAGGGCGCATTGCCCGGGCGGTTGTTTAccggctg                                                    >  2:1421571/1‑284 (MQ=255)
                                                                                                                                                                                                                                 ccGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTgg                                                 >  1:1852849/1‑288 (MQ=255)
                                                                                                                                                                                                                                 ccGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTgc                                                 >  1:1761891/1‑289 (MQ=255)
                                                                                                                                                                                                                                       tgcgaaCAAAGGCGTTCGCTGTTCCGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTGGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCa                                           <  2:1208498/285‑1 (MQ=255)
                                                                                                                                                                                                                                              aaaGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATgcggcg                                                                                                                                                                                                                                                             >  1:718347/1‑72 (MQ=255)
                                                                                                                                                                                                                                               aaGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCa                                    >  1:1002937/1‑288 (MQ=255)
                                                                                                                                                                                                                                               aaGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCa                                    >  2:106114/1‑288 (MQ=255)
                                                                                                                                                                                                                                                aGGCGATCGCTTTTCCGATAGGTTTTCGACACTGCATCGGCCG‑GTAAGTGTTAGCGCACCAGATGTGGCGTTTTAATGGTATGGTGGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGGGCGTGGCTGTCTGGCGATGGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                                  <  2:1521341/289‑1 (MQ=255)
                                                                                                                                                                                                                                                aGGCGATCGCTTTTACGTTCGGATTTCCGCACTGCATAAGTCG‑GTCCGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                                  <  2:890492/289‑1 (MQ=255)
                                                                                                                                                                                                                                                aGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                                  <  1:1331465/289‑1 (MQ=255)
                                                                                                                                                                                                                                                aGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                                  <  2:1152283/289‑1 (MQ=255)
                                                                                                                                                                                                                                                aGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                                  <  1:828607/289‑1 (MQ=255)
                                                                                                                                                                                                                                                aGGAGATCGCTGTTTCGATCTGATTTCCGCACTGAATCAGTGG‑GTACGTAGTATCTGACCCGATGCGGGGCTGTACCGGTCTACGCGAATTATTACCGCTGGTGGCGGTCCGTTATATGTCGCGCGTCGCTGTGTGGCGATTGCGACTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                                  <  2:1657396/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 gggttgagCTTTTACGCTCGTATTCCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACGCGATGGGGCGCTGTACTGGTATGCGCGACTTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGGCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                                  <  2:70907/281‑1 (MQ=255)
                                                                                                                                                                                                                                                  gCGATCGCTGTTACGATTGGATTTCCGAATTGCATAGGTCG‑GTACGTGGAAGCGCACCCGCTGCGGCGCTGTCCTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTGATATGTCGCGCGTCGCTGTCTGGGGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACg                                 <  2:1811373/288‑1 (MQ=255)
                                                                                                                                                                                                                                                  cgcggcGCTTTTACGGTCTGGTTGCCGAACTGTAT‑AGATCGGTACGTGGGAGCGCCCCCGATGCGGCGCTATACTGGTAGGCGGGAATTATTACCACTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACg                                 <  2:800750/283‑1 (MQ=255)
                                                                                                                                                                                                                                                   cGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGc                                <  1:1198236/288‑1 (MQ=255)
                                                                                                                                                                                                                                                            ttACGATCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACt                      <  1:652241/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                  tCTGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAAc                                  >  1:1170816/1‑271 (MQ=255)
                                                                                                                                                                                                                                                                    tGATTTCCGCACTGCATAAGTCG‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCTCCATTGCTCCGGCGATTGTTTACCTGGCCTGCTCGCCAAAAAGCAACGCTGCCTACCCTGCGTTTaa              >  2:1090831/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
GCAAGTACTAACTCAGGCGATGGAAGACAAAACCCGTGGCTATGGTGGTCAGGATATTGTTCTGCCAGATGAAACACGACGCGCCATTGCTGAACTGGTGAATGGCGACGCGCGCCGGGCGTTAAATACGCTGGAAATGATGGCGGATATGGCCGAAGTCGATGATAGCGGTAAGCGGGTCCTGAAGCCTGAATTACTGACCGAAATCGCCGGTGAACGTAGCGCCCGCTTTGATAACAAAGGCGATCGCTTTTACGATCTGATTTCCGCACTGCATAAGAGC‑GTACGTGGTAGCGCACCCGATGCGGCGCTGTACTGGTATGCGCGAATTATTACCGCTGGTGGCGATCCGTTATATGTCGCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTTAAAGCCGCGCTGGC  >  CP042583/801400‑801960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A