Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,813,414 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,813,4140AT99.3% 702.1 / NA 298intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (156/140);  minor base G (1/1);  total (157/141)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,813,4150CG99.0% 697.0 / NA 298intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (154/140);  minor base T (2/1);  total (157/141)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,813,4160TA100.0% 699.4 / NA 298intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (157/141);  total (157/141)

Only 100 of 298 total aligned reads displayed.

TATTGGAAATTAAGCTGTTAAAACCAATATCCAGATAGGCATAAATTCCCGTACTGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCGCTTTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAAGCTGACATCGCGAATGCTCGGCTGGCGCAGACTCGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGGCTGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGACCTCTTTTTCGGTTA  >  CP042583/1813134‑1813694
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                        
        attaacgagTTAAAACCAATATCCAGATAGGCATAAATTCCCGTTGAGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGt                                                                                                                                                                                                                                                                            >  1:1734869/9‑288 (MQ=255)
          taacgagTTAAAACCAATATCCAGATAGGCATAAATTCCCGTTGAGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTAcc                                                                                                                                                                                                                                                                         <  2:1249048/283‑1 (MQ=255)
                 ttAAAACCAATATCCAGATAGGCATAAATTCCCGTTGAGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGa                                                                                                                                                                                                                                                                  <  2:1181325/289‑1 (MQ=255)
                          atatCCAGATAGGCATAAATTCCCGTTGAGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCg                                                                                                                                                                                                                                                          >  1:1863744/1‑288 (MQ=255)
                           tatCCAGATAGGCATAAATTCCCGTTGAGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTTCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGc                                                                                                                                                                                                                                                         >  2:918458/1‑288 (MQ=255)
                                       cATAAATTCCCGTTGAGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGACTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGgtttgttt                                                                                                                                                                                                                                              >  1:1086163/1‑287 (MQ=255)
                                         tAAATTCCCGTTGAGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCtt                                                                                                                                                                                                                                          >  1:317359/1‑289 (MQ=255)
                                            aTTCCCGTTGAGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGt                                                                                                                                                                                                                                       <  1:186990/289‑1 (MQ=255)
                                                      agcggcgCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAAc                                                                                                                                                                                                                              >  2:971397/2‑288 (MQ=255)
                                                       gcggcgCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACg                                                                                                                                                                                                                             <  1:744719/288‑1 (MQ=255)
                                                             ctcctcAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCCC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCACACCAGACCGGCAATACCGAGGATCTCCCCTGTATGCAGATCAAACGAGACATCGCGAATCGACGGCCGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTGTGTTGTCTTTGTCAGGGAAACGCTGGTTa                                                                                                                                                                                                                      >  1:266465/1‑289 (MQ=255)
                                                                 tcAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAagag                                                                                                                                                                                                                  <  1:368386/289‑1 (MQ=255)
                                                                  cAGTTAACAGGGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGGTCTGTTGGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAgaga                                                                                                                                                                                                                 <  2:562183/289‑1 (MQ=255)
                                                                       aCCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGc                                                                                                                                                                                                             >  1:523954/1‑288 (MQ=255)
                                                                          aGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGGTACGTACCTCGAGGATGACTTCGCCCGGTGTGTTTTCTTTGTTAGGGAAACGCTGGGTAAGAGAACGCCCa                                                                                                                                                                                                          >  2:1522990/1‑288 (MQ=255)
                                                                            tGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCt                                                                                                                                                                                                                                           <  2:942998/253‑1 (MQ=255)
                                                                            tGCAAATCCATGGTTCATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCTAACGAGACACCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTGACGTACCTCGCGGATGACTTCGCCCGGTTTGTTTTCCTTGTCTGGGAAATGCTGGGTAAGAGAACGGCAAAc                                                                                                                                                                                                        >  2:178797/1‑288 (MQ=255)
                                                                             gCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGccc                                                                                                                                                                                                                                                       >  2:535431/1‑240 (MQ=255)
                                                                                aaTCCATGGTTTTTGTGTTCGGTGGCATTATGGTTATTGATTGGTTGGCCGTGACACGTTATGGTGACAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACcatca                                                                                                                                                                                                   <  2:768675/289‑1 (MQ=255)
                                                                                 aTCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCCACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATCCCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCC‑GGTTACGTACCTCCTGGATGACTACGCCCGGTCTGTTTTCCTTGTCAGGCAAACGCTGGTTAATATAACGCCCAACcatca                                                                                                                                                                                                   >  2:641678/1‑288 (MQ=255)
                                                                                      tGGTTTTTGGCTTCGTTTGCATTCTGGTTATTGAGCTGTTTGCCGTGCAACGTTATGTTGCCAGCCGCTTTCTC‑GCCAATACCAAATAACGTCTACACAATATCGGTACGTTTCGCCCCCACCAGACCTGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCga                                                                                                                                                                                             <  2:680418/289‑1 (MQ=255)
                                                                                      tGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAATGCTGGTTAAGAGAACGCCCAACCATCATGGCga                                                                                                                                                                                             >  1:1699049/1‑289 (MQ=255)
                                                                                      tGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCga                                                                                                                                                                                             >  1:160648/1‑289 (MQ=255)
                                                                                      tGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCga                                                                                                                                                                                             <  1:124950/289‑1 (MQ=255)
                                                                                             tGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGAACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATAACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCtt                                                                                                                                                                                      >  1:1277800/1‑289 (MQ=255)
                                                                                                   cGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCTACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGCTTTCTTTGTCAGGGAAACGCGGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGtact                                                                                                                                                                                 >  2:1496314/1‑285 (MQ=255)
                                                                                                   cGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCa                                                                                                                                                                                 >  1:421241/1‑288 (MQ=255)
                                                                                                   cGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCa                                                                                                                                                                                 >  1:377902/1‑288 (MQ=255)
                                                                                                   cGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCAAACCATCATGGCGATGATCTTGTCCa                                                                                                                                                                                 >  1:1144931/1‑288 (MQ=255)
                                                                                                     ttgggttttgggTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCg                                                                                                                                                                              <  2:134724/279‑1 (MQ=255)
                                                                                                         cATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCa                                                                                                                                                                           <  1:549553/288‑1 (MQ=255)
                                                                                                                          tGTTTGCCGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCgg                                                                                                                                                         <  1:665826/289‑1 (MQ=255)
                                                                                                                          tGTTGGCCGTGCAACGTTAAGGTGCCAGCCGATTTCTC‑GCTAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCgg                                                                                                                                                         <  2:1431266/289‑1 (MQ=255)
                                                                                                                               gcgtgccAACGTAATGGTGCCAGCCGATTTCTC‑CCAAATACCAAATAACGTCTCACAAATATCGGTACGTGTAGCCCCAACCAAACCGGCAAAACCGAGGATCTCCCCTTTATGCGGATCAACCGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTGCGCACGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCAGCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCg                                                                                                                                                    <  2:1170342/283‑1 (MQ=255)
                                                                                                                                 cGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGa                                                                                                                                                   <  1:1236875/288‑1 (MQ=255)
                                                                                                                                 cGTGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGAt                                                                                                                                                  <  1:971397/289‑1 (MQ=255)
                                                                                                                                   tGCAACGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCga                                                                                                                                                                                             >  2:1649865/1‑244 (MQ=255)
                                                                                                                                      aaCGTTATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCgatg                                                                                                                                                                                           <  1:624283/243‑1 (MQ=255)
                                                                                                                                           tATGGTGCCAGCCGATTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGCGGCGATCCACTGCCCg                                                                                                                                        >  1:988290/1‑289 (MQ=255)
                                                                                                                                              ggTGCCAG‑GCCATTCTCTGCGAGTACCCAAGTACGTCTCAACCATATCGTTACGTTTCGCCCCCCACAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑cg                                                                                                                                    <  2:159868/289‑1 (MQ=255)
                                                                                                                                                 gcccgccgatttCTC‑GCGAATCCCAAAGAACTTCTCAACAATAGCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑cgcg                                                                                                                                  <  2:408805/279‑1 (MQ=255)
                                                                                                                                                  ccagccgatttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAAAGCCAAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCCGCTCGGTGGCGCTCCACTGACCGT‑CCCGCa                                                                                                                                >  2:1451962/9‑289 (MQ=255)
                                                                                                                                                  ccagccgatttCCC‑GCGAATCCCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAACCGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCa                                                                                                                                <  1:824455/281‑1 (MQ=255)
                                                                                                                                                   cagccgatttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCaa                                                                                                                               <  2:1200544/282‑1 (MQ=255)
                                                                                                                                                   cagccgatttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCa                                                                                                                                <  1:206472/281‑1 (MQ=255)
                                                                                                                                                    agccgatttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTCAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACGGACCTTCCGCGCat                                                                                                                               >  2:1006472/7‑288 (MQ=255)
                                                                                                                                                    agccgatttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGATAACGCCCAACCATCATGGCGATGTTCTTTCCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAAt                                                                                                                              >  2:388253/7‑289 (MQ=255)
                                                                                                                                                     gccgatttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑gg                                                                                                                                                                                                                                                                                  >  1:1348514/6‑141 (MQ=255)
                                                                                                                                                          tttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACcatcat                                                                                                                                                                                                  <  2:1464565/216‑1 (MQ=255)
                                                                                                                                                          tttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACcatcat                                                                                                                                                                                                  >  1:1464565/1‑216 (MQ=255)
                                                                                                                                                          tttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGt                                                                                                                         <  1:918458/288‑1 (MQ=255)
                                                                                                                                                           ttCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTaa                                                                                                                       <  2:1606083/289‑1 (MQ=255)
                                                                                                                                                                   gAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTtcat                                                                                                                 <  1:1047500/288‑1 (MQ=255)
                                                                                                                                                                    agtACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGa                                                                                                                                           >  1:719604/3‑262 (MQ=255)
                                                                                                                                                                    aaTACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTtcatc                                                                                                                >  2:197453/1‑288 (MQ=255)
                                                                                                                                                                             tAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTgg                                                                                                      >  2:1758107/1‑289 (MQ=255)
                                                                                                                                                                                cGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGGCCTGCCAGCGGTCCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCTTGACAAAACCGGAAg                                                                                                   >  2:1943914/1‑289 (MQ=255)
                                                                                                                                                                                   ctcAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCa                                                                                                                                                                           >  2:1286613/1‑215 (MQ=255)
                                                                                                                                                                                   ctcAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCg                                                                                                                                        <  1:1173514/250‑1 (MQ=255)
                                                                                                                                                                                   ctcAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGAt                                                                                                 <  1:1522990/288‑1 (MQ=255)
                                                                                                                                                                                   ctcAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACACAACTGGAAGAtt                                                                                                >  2:1377314/1‑289 (MQ=255)
                                                                                                                                                                                     caacaaTATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGAtt                                                                                                >  1:1529007/1‑287 (MQ=255)
                                                                                                                                                                                       acaaTATCGGTACGTTTCGCCCCAACAGGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTGGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATttctt                                                                                            <  2:1560210/289‑1 (MQ=255)
                                                                                                                                                                                        caaTATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATttcttc                                                                                           <  1:1006472/289‑1 (MQ=255)
                                                                                                                                                                                        caaTATCGGGTAGGTTCGCCCCCAACGGCCCGGCAATACCGAGGATCTGCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATttcttc                                                                                           <  2:173630/289‑1 (MQ=255)
                                                                                                                                                                                           tatCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCAt                                                                                        >  1:857040/1‑289 (MQ=255)
                                                                                                                                                                                                gTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGTAATACGGTAACTTCAGCACATAACTGGAAGATTTCGTCCATTTTAt                                                                                   >  2:126656/1‑289 (MQ=255)
                                                                                                                                                                                                gTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGACGATTTCTTCCATTTTAt                                                                                   >  1:463829/1‑289 (MQ=255)
                                                                                                                                                                                                gTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTAt                                                                                   >  1:1900401/1‑289 (MQ=255)
                                                                                                                                                                                                  aCGTTTCCCCCCCACCAGCACTGCCATACCGAGGATCGCCCCTTTATGCAGATCAAACGAGTCATAGCGAATCGACTGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATgc                                                                                 <  2:839726/289‑2 (MQ=255)
                                                                                                                                                                                                   cGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATTGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATgcg                                                                                <  1:1841590/289‑3 (MQ=255)
                                                                                                                                                                                                      ttCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATgcgaga                                                                             >  2:1057770/1‑284 (MQ=255)
                                                                                                                                                                                                      tccGCCCCCCCCA‑ACCGGCAAACCCGGGGATCTCCCCTTTAGGCAGATCAAACGGGACATCGGGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATgcgagat                                                                            <  2:1596458/287‑7 (MQ=255)
                                                                                                                                                                                                       tCGCCCCCACCGGACCGGCAATACCGGAGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATgcgagat                                                                            <  2:317359/289‑7 (MQ=255)
                                                                                                                                                                                                       tCGCCCCCACCAGACCGGCAATACCGAGAATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATgcgagat                                                                            <  1:1750106/289‑7 (MQ=255)
                                                                                                                                                                                                            cccACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATaaa                                                                       <  1:1597254/289‑1 (MQ=255)
                                                                                                                                                                                                             ccaccaGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAAc                                                                      <  1:1946435/289‑1 (MQ=255)
                                                                                                                                                                                                              aaccaGACCGGCAATACCGCGGGTCTCCCCGTTATGCGGATCAAACGGGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGACCGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGa                                                                                                     <  2:186901/256‑1 (MQ=255)
                                                                                                                                                                                                               ccccgACCGGCAATACCGGGGATGTCCCCTTTATGCAGATCAAACGGGACATCGCGAACCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACaa                                                                    <  2:1529007/285‑1 (MQ=255)
                                                                                                                                                                                                                      cGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCa                                                             >  1:781404/1‑289 (MQ=255)
                                                                                                                                                                                                                         cAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGc                                                           >  1:148857/1‑288 (MQ=255)
                                                                                                                                                                                                                            tACCGGGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCcgcg                                                       <  2:806329/289‑1 (MQ=255)
                                                                                                                                                                                                                            tACCGAGGATCTCCCCTTTATGCAGCTCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGAGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCcgcg                                                       <  2:225326/289‑1 (MQ=255)
                                                                                                                                                                                                                              cctgggATCTCCCCTTTATGCAGATCAAACGAGACATGGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAGACGCTGGTTAAGGGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGAAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCcgcg                                                       <  2:988290/283‑1 (MQ=255)
                                                                                                                                                                                                                                  ggATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCttt                                                 >  1:101237/1‑289 (MQ=255)
                                                                                                                                                                                                                                      ctcCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAAt                                             >  1:1221296/1‑289 (MQ=255)
                                                                                                                                                                                                                                        ccccTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAAttt                                           >  1:1672198/1‑289 (MQ=255)
                                                                                                                                                                                                                                             ttATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGaa                                      <  1:492804/289‑1 (MQ=255)
                                                                                                                                                                                                                                               aTGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGaata                                    >  2:1725994/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    gATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGCGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGACCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCAAATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGt                               <  1:1639869/289‑1 (MQ=255)
                                                                                                                                                                                                                                                      tcaaacgagACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAGCTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGt                               <  2:494536/279‑1 (MQ=255)
                                                                                                                                                                                                                                                      tcaaacgagACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAAt                                             >  1:1725331/9‑273 (MQ=255)
                                                                                                                                                                                                                                                      taaaacgagccATCGCGAATCGCCGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGt                               <  2:447863/277‑1 (MQ=255)
                                                                                                                                                                                                                                                        aaaggagACATCGCGAGTCGACGGCTGGCGGAGTGACGTAA‑GGTTACGTACCTCGAGGATGACTTCGACCGGTTTGTTTTCTTTGTCAGGGACACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCGGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAAc                           <  2:1617006/283‑1 (MQ=255)
                                                                                                                                                                                                                                                        aaacgagACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAAc                           <  1:1559611/283‑1 (MQ=255)
                                                                                                                                                                                                                                                                   cgcgAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGa                 >  2:720666/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                   cgcgAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAc                <  1:401395/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                    gcgaatcgacGGCTGGCGCAGTGACGTCAGGGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGa                 >  1:89402/10‑288 (MQ=255)
                                                                                                                                                                                                                                                                             cGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCCGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCACAACCATCAAGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGACCTCTTTTTc       <  1:178797/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 tGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATAATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGACCTCTTTTTCGGTTa  <  2:1706524/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                        
TATTGGAAATTAAGCTGTTAAAACCAATATCCAGATAGGCATAAATTCCCGTACTGCGGCGCTCCTCAGTTACCAGTGCAAATCCATGGTTTATGGCTTCGTTGGCATTATGGTTATTGATCTGTTTGCCGTGCAACGTTATGGTGCCAGCGCTTTTCTC‑GCGAATACCAAATAACGTCTCAACAATATCGGTACGTTTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAAGCTGACATCGCGAATGCTCGGCTGGCGCAGACTCGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCAGGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGT‑CGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGGCTGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGACCTCTTTTTCGGTTA  >  CP042583/1813134‑1813694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A