Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,813,615 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,813,6150GC99.6% 622.3 / NA 263intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (145/117);  total (145/118)
Fisher's exact test for biased strand distribution p-value = 4.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,813,6160CG99.2% 604.9 / NA 263intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  major base G (144/115);  minor base A (0/2);  total (145/118)
Fisher's exact test for biased strand distribution p-value = 2.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,813,6170TA99.2% 612.6 / NA 263intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (143/116);  minor base G (0/2);  total (145/118)
Fisher's exact test for biased strand distribution p-value = 2.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 266 total aligned reads displayed.

TTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAAGCTGACATCGCGAATGCTCGGCTGGCGCAGACTCGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGGCTGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAAGCTAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGGCTAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACATTTTGTCCTGATCGACAAACATGCC‑TTTGGTGGGATATCGCCCCAGC  >  CP042583/1813331‑1813903
                                                                                                                                                                                                                                                                                              |||                                                                                                                                                                                                                                                                                                 
      cccACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATaaa                                                                                                                                                                                                                                                                                           <  1:1597254/289‑1 (MQ=255)
                  gCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAg                                                                                                                                                                                                                                                                                >  2:483347/1‑288 (MQ=255)
                  gCAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGCCGCGCAATACGGTAACTTCATCACATAACTGGAAGCTTCCTTCCATTTTATGCGAAATATAAACAATAcccacg                                                                                                                                                                                                                                                                                >  2:389272/1‑284 (MQ=255)
                   cAATACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGc                                                                                                                                                                                                                                                                               >  2:1916777/1‑288 (MQ=255)
                      tACCGGGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCcgcg                                                                                                                                                                                                                                                                           <  2:806329/289‑1 (MQ=255)
                      tACCGAGGGTCTCCCCTTTATGCAGATCAACAGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCcgcg                                                                                                                                                                                                                                                                           <  2:1517495/289‑1 (MQ=255)
                      tACCGAGGATCTCCCCTTTATGCAGCTCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GAGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCcgcg                                                                                                                                                                                                                                                                           <  2:225326/289‑1 (MQ=255)
                      tACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCcgcg                                                                                                                                                                                                                                                                           <  1:1078022/289‑1 (MQ=255)
                      tACCGAGGATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCcgcg                                                                                                                                                                                                                                                                           <  2:160648/289‑1 (MQ=255)
                      tACCGAGGATCTCCCCTTTATGCACATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCcgcg                                                                                                                                                                                                                                                                           <  1:268384/289‑1 (MQ=255)
                            ggATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCttt                                                                                                                                                                                                                                                                     >  1:101237/1‑289 (MQ=255)
                            ggATCTCCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCttt                                                                                                                                                                                                                                                                     >  1:1678925/1‑289 (MQ=255)
                                ctcCCCTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAAt                                                                                                                                                                                                                                                                 >  1:1221296/1‑289 (MQ=255)
                                   cccTTTATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTa                                                                                                                                                                                                                                                              >  2:1185231/1‑289 (MQ=255)
                                       ttATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGaa                                                                                                                                                                                                                                                          <  1:1057770/289‑1 (MQ=255)
                                       ttATGCAGATAAAACGCGACATCGCGGATCGACGGCTGGCGCAGTGATGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATAGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGaa                                                                                                                                                                                                                                                          <  1:795003/289‑1 (MQ=255)
                                        tATGCAGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGCTGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGaat                                                                                                                                                                                                                                                         >  1:52435/1‑289 (MQ=255)
                                             aGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTCCCTCGAGCATGACTTCGCCCGGTTTGTTTTCTTTGTAG‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGCTGAGCTTGTCCAGCGTCAGTCCTCCCAGCGGTTCGGTGACGCTCCACGGACTGTCGCGCAATACGGTAACTTCATCACATAACTGCAAACTTTCTTCAATTTTATGCGAGCTATAAACAATACCGCAGTTGCTCCCTTTTAATTTACGacttgtag                                                                                                                                                                                                                                                    >  2:1319712/1‑282 (MQ=255)
                                             aGATCAAACGAGACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAg                                                                                                                                                                                                                                                    >  2:1718182/1‑289 (MQ=255)
                                               atcaaacgagACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATTGCGATGATCTTGTCCATCGTCAGTCCTGCCAGAGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGTAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATACTAGTg                                                                                                                                                                                                                                                  >  2:963446/10‑289 (MQ=255)
                                               atcaaacgagACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACTGTCACTTCATCACATCACTGGAAGATTGCTTCCATTTTATGCTCAATATAAACAATCACGCTACCGCTGTCTTTTAATTTGCGAATAATAGTg                                                                                                                                                                                                                                                  >  2:633131/10‑289 (MQ=255)
                                               atcaaacgagACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTCTGCGAGATATAAACAATACCGCAGCCGACCTCTTTTAATTTCCGAATAATAGTg                                                                                                                                                                                                                                                  >  2:1005290/10‑289 (MQ=255)
                                                taaaacgagccATCGCGAATCGCCGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGt                                                                                                                                                                                                                                                   <  2:447863/277‑1 (MQ=255)
                                                 caaacgagACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGa                                                                                                                                                                                                                                                 >  1:672631/8‑288 (MQ=255)
                                                  aaacgagACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAAc                                                                                                                                                                                                                                               <  1:1559611/283‑1 (MQ=255)
                                                  aaacgagACACCGCGAATGGACGGCTTGCGCAGGTACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAAc                                                                                                                                                                                                                                               <  2:540823/283‑1 (MQ=255)
                                                   aacgagACATCGCGAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACa                                                                                                                                                                                                                                              <  1:1609037/284‑1 (MQ=255)
                                                             cgcgAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGAttta                                                                                                                                                                                                                                     >  2:1727815/1‑286 (MQ=255)
                                                             cgcgAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGa                                                                                                                                                                                                                                     >  2:720666/1‑288 (MQ=255)
                                                             cgcgAATCGACGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAc                                                                                                                                                                                                                                    <  1:401395/289‑1 (MQ=255)
                                                              gcgaatcgacGGCTGGCGCAGTGACGTCAGGGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGa                                                                                                                                                                                                                                     >  1:89402/10‑288 (MQ=255)
                                                                       cGGCTGGCGCAGTGACGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTc                                                                                                                                                                                                                         <  2:421241/288‑1 (MQ=255)
                                                                               gcagggcagTCA‑GGGTACGTAACTCTACGCTGGCTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGACACGCTGGTTAAGAGAACGCCCCATCATAATCGCGATGAGCTTGTCCATCGTCAGTCCCGCCAGCGGTTCGGTCGCGATCCGCTGTGCGTCGCGCAATGCGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGTGCTCTTTTAATTTACAACTAATAGTGAACAGAGGATTGAC‑‑CTCTTGTTCGGTTaacg                                                                                                                                                                                                                 <  2:173264/280‑3 (MQ=255)
                                                                                 agtgacGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATTATTTCC‑‑CTCTTTTTCgcccaacgaa                                                                                                                                                                                                               <  1:798610/283‑10 (MQ=255)
                                                                                 agtgacGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTaacgaa                                                                                                                                                                                                               <  1:973112/283‑5 (MQ=255)
                                                                                        tCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAATCgg                                                                                                                                                                                                       >  2:1602701/1‑289 (MQ=255)
                                                                                            gtttATGTACCTCTAGGTTGACTTGGCCCGGTGTGTTTTC‑TTGTCAGGGGAAACGCTGGTTAAGGGAAGGCCAAACCATCATGGCGATGATNTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGAAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATGTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGtt                                                                                                                                                                                                     <  2:1699049/286‑1 (MQ=255)
                                                                                             gTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACa                                                                                                                                                                                                                                              <  2:1547118/248‑1 (MQ=255)
                                                                                              ttACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCa                                                                                                                                                                                                   >  1:1818265/1‑288 (MQ=255)
                                                                                                   tACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATa                                                                                                                                                                                             >  1:516973/1‑289 (MQ=255)
                                                                                                        cGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAAAAGTCGGATCATCCATaaatgc                                                                                                                                                                                        >  2:556443/1‑285 (MQ=255)
                                                                                                                aCTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTc                                                                                                                                                                                 >  1:146300/1‑288 (MQ=255)
                                                                                                                      cccGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAAtttt                                                                                                                                                                                  >  2:709079/1‑281 (MQ=255)
                                                                                                                            ttgtttTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGaa                                                                                                                                                                     <  1:1768092/288‑1 (MQ=255)
                                                                                                                                     ttGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTgg                                                                                                                                                           <  1:483347/289‑1 (MQ=255)
                                                                                                                                     ttGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTg                                                                                                                                                            >  1:852444/1‑288 (MQ=255)
                                                                                                                                     ttGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTg                                                                                                                                                            >  1:1660865/1‑288 (MQ=255)
                                                                                                                                       gTCA‑GGGAAACGCTGGGTAAGAGCACCACCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCg                                                                                                                                                         <  2:101237/289‑1 (MQ=255)
                                                                                                                                                   gCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGatcat                                                                                                                                              <  1:998851/289‑1 (MQ=255)
                                                                                                                                                                  gCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCTGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGCAAACGCTTTGGCGATTTCGATCATCTGCATTTgctaaac                                                                                                                               >  2:525986/1‑283 (MQ=255)
                                                                                                                                                                       aCCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATa                                                                                                                          >  1:1614469/1‑289 (MQ=255)
                                                                                                                                                                       aCCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATa                                                                                                                          >  2:653116/1‑289 (MQ=255)
                                                                                                                                                                            catGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAAtgt                                                                                                                      >  1:314812/1‑288 (MQ=255)
                                                                                                                                                                               gacGATGATCTTGTGCGTCGTCAGTCCTGCCAGTGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATGCCGCAGCCGCGCTCTTGTAATTTACGAATAATATTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTGACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCg                                                                                                                  <  2:370526/287‑1 (MQ=255)
                                                                                                                                                                                  gatgatCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGAc                                                                                                                >  1:352915/1‑288 (MQ=255)
                                                                                                                                                                                   atgatCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGTTTTCGATCATCTGCATTTGCGAAACGAATAATGTGCCgcag                                                                                                               >  2:1372302/1‑285 (MQ=255)
                                                                                                                                                                                         ttGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCa                                                                                                         >  2:545863/1‑288 (MQ=255)
                                                                                                                                                                                          tGTCCATTGGAAGTCATCCCAACGGTTCGGAGACGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGCAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACTCGCGCAcg                                                                                                       <  2:1144931/289‑1 (MQ=255)
                                                                                                                                                                                          tGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCAcg                                                                                                       <  2:857040/289‑1 (MQ=255)
                                                                                                                                                                                           gTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATCATGTGCCGACGCGCGCAcgc                                                                                                      >  1:1847443/1‑289 (MQ=255)
                                                                                                                                                                                               cacGTAAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCAAATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGAt                                                                                                  <  2:1678925/287‑1 (MQ=255)
                                                                                                                                                                                               aTCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGAt                                                                                                  <  1:1758107/289‑1 (MQ=255)
                                                                                                                                                                                                tCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCAcg                                                                                                       >  1:1127033/1‑283 (MQ=255)
                                                                                                                                                                                                tCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCAcg                                                                                                       <  2:1127033/283‑1 (MQ=255)
                                                                                                                                                                                                 cGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGGCATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTCTGCGCGATATAACCAATACCGCCGCCGCGCCCTTTTAATTTAGGAAAACTAGTGACCAGATATTTGTC‑‑CGCTTCTTCGGGTAAAGAATAACTCGGTTAATCCTTACACACAATTTTCGCGTTTTAGCAAATCGCTTTGGCGATTGCGATCATCTCCCTTTCCACACCGGCAAATGTGCCGCCGCGCGAAcacgatcag                                                                                                >  2:740320/1‑284 (MQ=255)
                                                                                                                                                                                                 cGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCg                                                                                                >  1:1858509/1‑289 (MQ=255)
                                                                                                                                                                                                 cGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCg                                                                                                >  2:941906/1‑289 (MQ=255)
                                                                                                                                                                                                 cGTCAGTCATGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCg                                                                                                <  1:1496314/289‑1 (MQ=255)
                                                                                                                                                                                                  gTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGa                                                                                               <  2:325678/289‑1 (MQ=255)
                                                                                                                                                                                                  gTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGa                                                                                               <  1:1185231/289‑1 (MQ=255)
                                                                                                                                                                                                    cAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGata                                                                                             <  1:716860/289‑1 (MQ=255)
                                                                                                                                                                                                      gTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGa                                                                                                                            <  1:410329/256‑1 (MQ=255)
                                                                                                                                                                                                      gTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATc                                                                                           >  2:768708/1‑289 (MQ=255)
                                                                                                                                                                                                                   ttCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCg                                                                              >  1:1381649/1‑289 (MQ=255)
                                                                                                                                                                                                                     cGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGa                                                                                               <  1:199421/270‑1 (MQ=255)
                                                                                                                                                                                                                      ggTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATACCCAGTTctgca                                                                           >  2:1407079/1‑285 (MQ=255)
                                                                                                                                                                                                                             aTCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATc                                                                     >  1:1721017/1‑288 (MQ=255)
                                                                                                                                                                                                                                cACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCtt                                                                 <  1:541115/289‑1 (MQ=255)
                                                                                                                                                                                                                                    gACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGt                                                             >  2:1754803/1‑289 (MQ=255)
                                                                                                                                                                                                                                       cGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAc‑‑c                                                                                                                                                                                                                                 >  2:1257122/1‑122 (MQ=255)
                                                                                                                                                                                                                                       cGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGAt                                                                                                                           <  1:76682/224‑1 (MQ=255)
                                                                                                                                                                                                                                       cGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGttt                                                           >  2:1825461/1‑288 (MQ=255)
                                                                                                                                                                                                                                         tCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGa                                                                                               >  2:402916/1‑250 (MQ=255)
                                                                                                                                                                                                                                         tCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGTTTTcgc                                                        >  1:358955/1‑289 (MQ=255)
                                                                                                                                                                                                                                          cgcgCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTcgc                                                        <  2:314812/288‑1 (MQ=255)
                                                                                                                                                                                                                                           gagaaaTACGGGAACTTTATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCgg                                                      >  1:1251972/5‑289 (MQ=255)
                                                                                                                                                                                                                                               aaTACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTta                                                                                                                                                                           >  1:193790/1‑168 (MQ=255)
                                                                                                                                                                                                                                               aaTACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTta                                                                                                                                                                           <  2:193790/168‑1 (MQ=255)
                                                                                                                                                                                                                                                              tcaCATAACTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGGGGTACATTTTGTCCTGATCg                                    >  2:1214558/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                    aaCTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACATTTTGTCCTGATCGACAAACa                             >  1:440181/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                    aaCTGGAAGATCTCTTCCATTTTCTGCGAGATATACACAATACAGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGTACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCCTTGGAGTTTTCGATCATCTGCTTTTGCACAACGGATCTTGTGCTAGCTGACGCATGCCGCTCCATCTCTATCTCCATTGCTTCAAACTTCTCCTTTGTTGGCCGCTACATTTTGTCCTGATccgctaaca                             >  2:1461356/1‑281 (MQ=255)
                                                                                                                                                                                                                                                                      cTGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGACCTCTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACATTTTGTCCTGATCGACAAACa                             <  1:1727815/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTgcgaaac                                                                                                                               <  2:920557/188‑7 (MQ=255)
                                                                                                                                                                                                                                                                       tGGAAGATTTCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACCTTTTGTCCTGATCGACAAACATg                           >  2:1642053/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                              tttactcCATTTTATAGCAGATATAAACAATACCGCCGCCGCGCTCTTTTAATATACGAATAATAGGGAACAGATGCTTGAC‑‑CTCTTTTGCGGTTAACGAAGATGTCGGTCCGTTCATAATCACAATTTTGGCGTTATAGGAAAACGCTGTGGCGATGTCGATCATCTGCATTTGCGAAACGGATAATGGGCCGACGCGCGCACGCGGATCGATATCAAGATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACATTTTGTCCTGATCGACAAACATGCC‑TTtg                    <  2:1857173/282‑1 (MQ=255)
                                                                                                                                                                                                                                                                              tttCTTCCATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACATTTTGTCCTGATCGACAAACATGCC‑TTtggt                  <  1:1429715/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                    ccATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAACCGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCCTTGGTTTCCGGGTAAATTTTGTCCTTATCGACAAACATGCCGTGTGTTGGGat             >  2:1818552/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                    ccATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACATTTTGTCCTGATCGACAAACATGCC‑TTTGGTGGGata            <  1:1291624/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                     cATTTTATGCGAGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACATTTTGTCCTGATCGACAAACATGCC‑TTTGGTGGGata            >  1:884482/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                               gtGATATAACCAATACCGCAGCCTCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAACGAAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGCGAAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACATTTTGTCCTGATCGACAAACATGCC‑TTTGGTGGGATATCGCCCCAGc  <  2:873530/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                                              |||                                                                                                                                                                                                                                                                                                 
TTCGCCCCCACCAGACCGGCAATACCGAGGATCTCCCCTTTATGCAGATCAAAGCTGACATCGCGAATGCTCGGCTGGCGCAGACTCGTCA‑GGTTACGTACCTCGAGGATGACTTCGCCCGGTTTGTTTTCTTTGTCA‑GGGAAACGCTGGTTAAGAGAACGCCCAACCATCATGGCGATGATCTTGTCCATCGTCAGTCCTGCCAGCGGTTCGGTGGCGATCCACTGACCGTCGCGCAATACGGTAACTTCATCACATAACTGGAAGATTTCTTCCATTTTATGGCTGATATAAACAATACCGCAGCCGCGCTCTTTTAATTTACGAATAATAGTGAACAGATGATTGAC‑‑CTCTTTTTCGGTTAAGCTAGAAGTCGGTTCATCCATAATCACAATTTTCGCGTTATAGGAAAACGCTTTGGCGATTTCGATCATCTGCATTTGGCTAACGGATAATGTGCCGACGCGCGCACGCGGATCGATATCAATATCCAGTTCGTCAAAAATCGCTTTGGTTTCGCGGTACATTTTGTCCTGATCGACAAACATGCC‑TTTGGTGGGATATCGCCCCAGC  >  CP042583/1813331‑1813903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A