Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,931,022 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,931,0220GC99.2% 566.5 / NA 246intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base C (132/112);  total (132/114)
Fisher's exact test for biased strand distribution p-value = 2.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,931,0230CG99.6% 569.9 / NA 246intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (132/113);  minor base A (0/1);  total (132/114)
Fisher's exact test for biased strand distribution p-value = 4.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,931,0240TA99.6% 581.0 / NA 246intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (132/113);  minor base C (0/1);  total (132/114)
Fisher's exact test for biased strand distribution p-value = 4.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 246 total aligned reads displayed.

TTCACTTGCCAGTTGATTGATAAGCAACGTTTTTTCTTGTTTACTCAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGACTTCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGGCTGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCGCTAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCA  >  CP042583/1930746‑1931301
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                     
ttcACTTGCCAGTTGATTGATAAGCAACGTTTTTTCTTGTTTACTCAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATaa                                                                                                                                                                                                                                                                             >  1:366552/1‑289 (MQ=255)
       gCCAGTTGATTGATAAGCAACGTTTTTTCTTGTTTACTCAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATa                                                                                                                                                                                                                                                                       >  2:130889/1‑288 (MQ=255)
       gCCAGTTGATTGATAAGCAACGTTTTTTCTTGTTTACTCAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATa                                                                                                                                                                                                                                                                       >  2:400804/1‑288 (MQ=255)
                            gTTTTTTCTTGTTTACTCAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCg                                                                                                                                                                                                                                                 <  1:1122664/289‑1 (MQ=255)
                            gTTTTTTCTTGTTTACTCAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCg                                                                                                                                                                                                                                                 <  1:1130103/289‑1 (MQ=255)
                            gTTTTTTCTTGTTTACTCAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCg                                                                                                                                                                                                                                                 <  1:484113/289‑1 (MQ=255)
                                tttCTTGTTTACTCAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCgcagc                                                                                                                                                                                                                                             <  1:620459/289‑1 (MQ=255)
                                      gTTTACTCAGAAAACGAGCCTGCTCCGGTGTGTCATCAAACCAAAAGGATCTGAATACCCCAGCGCCGACTACCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCAATAAATCCATGCATCCCCAACAGGGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCGGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAg                                                                                                                                                                                                                                       <  2:1588729/289‑1 (MQ=255)
                                        ttACTTAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCa                                                                                                                                                                                                                                     <  1:1028014/289‑1 (MQ=255)
                                                aaaaCGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATCCCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGa                                                                                                                                                                                                                             >  1:1204287/1‑289 (MQ=255)
                                                     gTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTTCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTAt                                                                                                                                                                                                                        >  1:1630946/1‑289 (MQ=255)
                                                              ccGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAAttt                                                                                                                                                                                                               <  1:1208348/289‑1 (MQ=255)
                                                                   gtgtCATCAAGCCAAAAGAATGTTAATAGCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACACCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCt                                                                                                                                                                                                           <  1:1147954/288‑1 (MQ=255)
                                                                    tgtCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTgag                                                                                                                                                                                                                                                                                 >  2:267341/1‑217 (MQ=255)
                                                                    tgtCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTgag                                                                                                                                                                                                                                                                                 <  1:267341/217‑1 (MQ=255)
                                                                    tgtCATCAAGCCAAAAGAATGGGAAAACCCCACAACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCtt                                                                                                                                                                                                          <  2:136308/288‑1 (MQ=255)
                                                                      tcatcaAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAg                                                                                                                                                                                                       >  1:106617/1‑289 (MQ=255)
                                                                       catcaAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACGATCAGAAATTTCGCTTCAGt                                                                                                                                                                                                      >  1:699183/1‑289 (MQ=255)
                                                                                       tgtgAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAACAATCCGGCCTCCGCAACACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCccatgccatt                                                                                                                                                                                      >  1:843265/1‑288 (MQ=255)
                                                                                        ttaactACCCCAGCCCCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATCAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATgg                                                                                                                                                                                     <  2:120820/284‑1 (MQ=255)
                                                                                                   aGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTgccgaaaga                                                                                                                                                                          >  1:545326/1‑282 (MQ=255)
                                                                                                   aGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTgccgaaaga                                                                                                                                                                          >  1:824557/1‑282 (MQ=255)
                                                                                                   aGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTgccgaaaga                                                                                                                                                                          >  2:1275444/1‑282 (MQ=255)
                                                                                                    gCACCGACTGCCAACAATCCTTCAATCACAAACATCCCGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTgccgaaagaa                                                                                                                                                                         <  1:247941/289‑9 (MQ=255)
                                                                                                    gCACCGAACGCCAACAATCCTTCAATCACAAACATCCCGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACCGCGCGCCGGAAAGCGGTGAGCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTgccgaaagaa                                                                                                                                                                         <  2:535673/289‑9 (MQ=255)
                                                                                                          aCTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTGACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATcccc                                                                                                                                                                   >  2:1249520/1‑289 (MQ=255)
                                                                                                          aCTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCa                                                                                                                                                                                                                                     <  2:1069120/223‑1 (MQ=255)
                                                                                                          aCTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGTAATcccc                                                                                                                                                                   >  1:9035/1‑289 (MQ=255)
                                                                                                          aCTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATcccc                                                                                                                                                                   >  1:495233/1‑289 (MQ=255)
                                                                                                          aCTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATccc                                                                                                                                                                    >  2:68709/1‑288 (MQ=255)
                                                                                                          aCTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATccc                                                                                                                                                                    >  1:1458537/1‑288 (MQ=255)
                                                                                                             gCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCcaca                                                                                                                                                                <  1:989929/289‑1 (MQ=255)
                                                                                                              ccAGCAATCCTTCCATCACAAACATCCCGAACCAGCCGGGATGCCCCATTAAGCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTACCGCCAGCGGTGCGCCCAGATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCAcag                                                                                                                                                               <  2:56709/289‑1 (MQ=255)
                                                                                                                           aataccaAACAGCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGTTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTa                                                                                                                                                  <  2:461656/284‑1 (MQ=255)
                                                                                                                           aaTCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTa                                                                                                                                                  <  1:889133/289‑1 (MQ=255)
                                                                                                                                   aCATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTTCGGAAACCATTGCGAAGTGAGATAAATCACACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATACACACAGCAGTGTTGTCGTACCAAACCa                                                                                                                                          >  1:194079/1‑289 (MQ=255)
                                                                                                                                        ccggaCCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAgg                                                                                                                                        <  2:1119358/282‑1 (MQ=255)
                                                                                                                                              cAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGccc                                                                                                                               <  2:1168037/289‑1 (MQ=255)
                                                                                                                                              cAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGccc                                                                                                                               <  1:1517785/289‑1 (MQ=255)
                                                                                                                                                gCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCCTGGCTGCCGAAAGAAATCCCCCCAGCAGTGTTTTCGTACCAATCCAGGTTCTGGccca                                                                                                                              >  2:767239/1‑287 (MQ=255)
                                                                                                                                                                      tGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTgcg                                                                                                                     <  2:842535/275‑1 (MQ=255)
                                                                                                                                                                      tGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTc                                                                                                        >  1:1673725/1‑288 (MQ=255)
                                                                                                                                                                      tGCATCTCCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTGCCGCATCAAAAGATTc                                                                                                        >  2:302443/1‑288 (MQ=255)
                                                                                                                                                                            tcCAACAGCGCGCCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGa                                                                                                  >  2:1437223/1‑288 (MQ=255)
                                                                                                                                                                                    cgcgcCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATcc                                                                                                                                           <  2:1812126/239‑1 (MQ=255)
                                                                                                                                                                                    cgcgcCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGa                                                                                         >  2:1860292/1‑289 (MQ=255)
                                                                                                                                                                                    cgcgcCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGa                                                                                         >  1:1607916/1‑289 (MQ=255)
                                                                                                                                                                                     gcgcCTGAAAGCGTGGATCCCAGTGTTAACGCCAGCGGTGCGCCCACATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCa                                                                                           <  2:193392/286‑1 (MQ=255)
                                                                                                                                                                                     gcgcCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGaa                                                                                        >  1:1880845/1‑289 (MQ=255)
                                                                                                                                                                                     gcgcCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGa                                                                                         <  2:606567/288‑1 (MQ=255)
                                                                                                                                                                                      cgcCGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGtgttg                                                                                                                                                       >  2:1129152/1‑225 (MQ=255)
                                                                                                                                                                                        ccGGAAAGCGGTGATCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCAGGAACACCCAGacac                                                                                      >  1:1340240/1‑288 (MQ=255)
                                                                                                                                                                                            aaaaccgtgatgccAGTGTTAACGCCAGCGGTGCGCCCAAATCGAACCGCACAATAATGCTGTCGCGAATACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGAAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAAGTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCata                                                                                 <  2:357393/277‑1 (MQ=255)
                                                                                                                                                                                                    gatCCCAGTGTTAACGCCGGCGGTTCGCACATAGAGAACAGACCCGTAATGCTGGCGCGATTACGCGGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCAAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGGTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACctca                                                                          <  2:1199521/286‑1 (MQ=255)
                                                                                                                                                                                                       cccAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCCTGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGa                                                                                         <  1:1354712/270‑1 (MQ=255)
                                                                                                                                                                                                             gtTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGc                                                                <  1:400804/289‑1 (MQ=255)
                                                                                                                                                                                                                 aCGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAAAGCATATACCACAAAAAAAAATCCTg                                                             >  2:381531/1‑288 (MQ=255)
                                                                                                                                                                                                                     cAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTccc                                                        <  1:1255589/289‑1 (MQ=255)
                                                                                                                                                                                                                     cAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTccc                                                        <  1:105957/289‑1 (MQ=255)
                                                                                                                                                                                                                     cAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTccc                                                        <  2:1673725/289‑1 (MQ=255)
                                                                                                                                                                                                                     cAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTccc                                                        >  2:219129/1‑289 (MQ=255)
                                                                                                                                                                                                                      aGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCa                                                       >  1:858685/1‑289 (MQ=255)
                                                                                                                                                                                                                        cGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAgc                                                     >  1:1441863/1‑289 (MQ=255)
                                                                                                                                                                                                                         ggTGCGACCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAAGCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTTTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAgcg                                                    <  1:943402/289‑1 (MQ=255)
                                                                                                                                                                                                                            gcgcCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCa                                                  <  1:1249520/288‑1 (MQ=255)
                                                                                                                                                                                                                            gcccccAAATAGAACAGCCCCATAATGCTGAGGAGATTACACTGCAGAAACCATGGGAAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCa                                                  <  2:1446133/285‑1 (MQ=255)
                                                                                                                                                                                                                             cgcCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCGGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTCCCAATCCAGGTTCTGGACCCCAGTTTGCGCATCAAAAGAATCTGCGGAAAACCCAGAACAGCATAAATCACAAAAAAAAAGCCAGTTCCTAGCGCATa                                                >  2:522374/1‑289 (MQ=255)
                                                                                                                                                                                                                              gcCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATa                                                <  1:302937/288‑1 (MQ=255)
                                                                                                                                                                                                                                  atatAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCtt                                           <  1:1860292/289‑1 (MQ=255)
                                                                                                                                                                                                                                    ataGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGGTTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCa                                         <  2:1301082/289‑1 (MQ=255)
                                                                                                                                                                                                                                    ataGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCa                                         <  1:1115374/289‑1 (MQ=255)
                                                                                                                                                                                                                                         aCAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACt                                    <  2:932386/289‑1 (MQ=255)
                                                                                                                                                                                                                                          cAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGcc                                                                                                                                                                                               >  1:604657/1‑133 (MQ=255)
                                                                                                                                                                                                                                          cAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTc                                   >  2:502173/1‑289 (MQ=255)
                                                                                                                                                                                                                                            gCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCa                                  >  1:128446/1‑288 (MQ=255)
                                                                                                                                                                                                                                            gCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAAAGCCTCCTCCCAGCCCAGAAGCTTCATTACTCa                                  >  2:170107/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGcc                                                                                                                                                                                               >  1:1306554/1‑130 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAATGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  1:1696/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTa                                                                                                                                                  <  1:229991/175‑1 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTCCCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACACAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  1:1575151/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATCCCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  2:1387774/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTccc                                                        <  2:556853/265‑1 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  1:1928990/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  1:1789993/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  2:713533/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  2:755688/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  2:1730832/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  2:1625868/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  2:1057282/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCaa                                 >  1:1295492/1‑288 (MQ=255)
                                                                                                                                                                                                                                             ccccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAAc                                <  1:1733624/289‑1 (MQ=255)
                                                                                                                                                                                                                                              cccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTg                                                                                                                       <  1:1762749/201‑1 (MQ=255)
                                                                                                                                                                                                                                              cccATAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTg                                                                                                                       >  2:1762749/1‑201 (MQ=255)
                                                                                                                                                                                                                                                  tAATGCTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATgg                                                                                                                                                                                     <  2:649741/135‑1 (MQ=255)
                                                                                                                                                                                                                                                       cTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGa                                                                                                           >  1:954888/1‑204 (MQ=255)
                                                                                                                                                                                                                                                       cTGGCGCGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGa                                                                                                           <  2:954888/204‑1 (MQ=255)
                                                                                                                                                                                                                                                          gcgcGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCt                   >  2:942775/1‑289 (MQ=255)
                                                                                                                                                                                                                                                          gcgcGATTACGCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGGTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAACAAAATGCCTGCCCCCAGCGCCACAGCTTCATTACCCAACCCGGTATCaa                      >  2:1506632/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                    gCTGCGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTg         <  1:764294/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                        cGGAAACCATTGCGAGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTg     >  1:72587/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                     
TTCACTTGCCAGTTGATTGATAAGCAACGTTTTTTCTTGTTTACTCAGAAAACGTGCCTGCTCCGGTGTGTCATCAAGCCAAAAGAATGTGAATACCCCAGCACCGACTGCCAACAATCCTTCAATCACAAACATCCAGAACCAGCCGGGATGCCCCATAAATCCATGCATCTCCAACAGCGCGCCGGAAAGCGGACTTCCCAGTGTTAACGCCAGCGGTGCGCCCATATAGAACAGCCCCATAATGCTGGCGCGATTACGCTGCGGAAACCATTGGCTGGTGAGATAAATCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCGCTAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCA  >  CP042583/1930746‑1931301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A