Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,937,715 3 bp→TCA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,937,7150AT99.6% 554.4 / NA 233intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (106/126);  minor base G (0/1);  total (106/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,937,7160GC99.1% 543.5 / ‑5.7 233intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (105/126);  minor base A (1/1);  total (106/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01
*CP0425831,937,7170TA99.6% 544.1 / ‑6.1 233intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (106/126);  minor base C (0/1);  total (106/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01

Only 100 of 235 total aligned reads displayed.

GGTTAGTACCCTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGAGTGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTAGTTTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTAGAGCACCTCAACACCCGTCGGCGCGAAATTGCCCAGCAATATCAGCAAG  >  CP042583/1937435‑1937994
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
ggtttcaaCCCTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTttcatttcat                                                                                                                                                                                                                                                                                   >  1:1277707/8‑289 (MQ=255)
     caaCCCTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCTACATATTGGCGCAAAAGGTACCGCTATTTTTTAATTTCTTGcctt                                                                                                                                                                                                                                                                              >  2:149629/3‑287 (MQ=255)
     caaCCCTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCAt                                                                                                                                                                                                                                                                              >  2:901511/3‑289 (MQ=255)
     caaCCCTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCAt                                                                                                                                                                                                                                                                              >  2:1516378/3‑289 (MQ=255)
       aCCCTCAATATGTTTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGAGGTCGACCGCTATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑a                                                                                                                                                                                                                                                                           <  1:1755472/289‑1 (MQ=255)
       aCCCTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑a                                                                                                                                                                                                                                                                           <  1:316571/289‑1 (MQ=255)
       aCCCTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑a                                                                                                                                                                                                                                                                           <  1:1465513/289‑1 (MQ=255)
         ccTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑aaa                                                                                                                                                                                                                                                                         <  1:1516378/289‑1 (MQ=255)
          cTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑aaaa                                                                                                                                                                                                                                                                        >  2:880070/1‑289 (MQ=255)
            cAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAat                                                                                                                                                                                                                                                                      >  2:939795/1‑289 (MQ=255)
            cAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATCCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCCAACGTTACGGCATCGCCGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATCCTGGCCCAAAAGGTACCGCCCTTTTTTCATTTCATGCCATT‑AAAAat                                                                                                                                                                                                                                                                      >  1:403807/1‑289 (MQ=255)
             aaTATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAata                                                                                                                                                                                                                                                                     >  1:328506/1‑289 (MQ=255)
              atatGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAatat                                                                                                                                                                                                                                                                    <  2:1427323/289‑1 (MQ=255)
                 tGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTAc                                                                                                                                                                                                                                                                 <  2:328506/289‑1 (MQ=255)
                 tGATTCCCTGGTTGGGTGACAGGCCGGTAATGGTGGATGTCGCCCGCGATACGCTGATGGTCCCGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTAc                                                                                                                                                                                                                                                                 <  2:661348/289‑1 (MQ=255)
                    tttCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAatat                                                                                                                                                                                                                                                                    >  2:1054711/1‑283 (MQ=255)
                    tgtgcTTGTGGGAGGCAGCGCCGTTAGTGGTGGATGTCCACCGCGATACGCGGATGGTCACGCCTCAAGCTATCGAGTCGTCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCATATATTGAGGCCATTCGCGCCATTGGCGAACGTTCCGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCt                                                                                                                                                                                                                                                               <  2:792137/284‑1 (MQ=255)
                     ttCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCtgt                                                                                                                                                                                                                                                             >  1:50522/1‑289 (MQ=255)
                       ccTTGTTGGGTGCAACGCCGGTAATGTTGGATGTCGACCGCGATCCGCTGATGGTCACGCCTGAAGCTATCGAGTCATCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGc                                                                                                                                                                                                                                                           <  1:1919939/289‑1 (MQ=255)
                       ccTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCtgt                                                                                                                                                                                                                                                             >  1:640719/1‑287 (MQ=255)
                          tgttgGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTACCGAGTCAGCCATTACGCCACGCACTCAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGACATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGATATCGAAGATGCTGCCCATGCCCCCGGTACGTATGACAAAGGGCGACATATCGGCGTAACAGTCACCGCTATTTTTTCATTTCTTGCATTT‑CTAAATCTTCCCTGTGGTG‑a                                                                                                                                                                                                                                                       >  2:312871/1‑289 (MQ=255)
                             tgGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAgg                                                                                                                                                                                                                                                    <  1:1054721/289‑1 (MQ=255)
                             tgGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACAAATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATTCCATT‑AAACATATTACCTGTGCTG‑AAgg                                                                                                                                                                                                                                                    >  1:1703410/1‑289 (MQ=255)
                              gggTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGt                                                                                                                                                                                                                                                   >  1:428764/1‑289 (MQ=255)
                                 tGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTAACTGTTCCT‑AAGGTgg                                                                                                                                                                                                                                                 >  2:1065214/1‑288 (MQ=255)
                                  gCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGc                                                                                                                                                                                                                                                <  2:514570/288‑1 (MQ=255)
                                  gCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGc                                                                                                                                                                                                                                                <  2:289370/288‑1 (MQ=255)
                                           gTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCTGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTAAGTATTACAAAGGGCGACATATTGGCGCCAAAGGGACAGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTA‑AATGTGGCCTGATTGTa                                                                                                                                                                                                                                       >  1:1244233/1‑288 (MQ=255)
                                           gTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGc                                                                                                                                                                                                                                                <  1:1398816/279‑1 (MQ=255)
                                           gTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGc                                                                                                                                                                                                                                                >  2:1398816/1‑279 (MQ=255)
                                                  tggATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGACTGATTGTAAATGATaa                                                                                                                                                                                                                               >  1:1849469/1‑289 (MQ=255)
                                                               cgATACGCTGATGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGACAAAGGTACCGCTATTTTTTCATTACATGCCATT‑AAAAATATTACCTGT‑CTGTAAGGTGGTCGGATTGTAACTGATAATGAAAAACTTGc                                                                                                                                                                                                                   >  2:1923235/1‑288 (MQ=255)
                                                                   aCGCTGATGGTAACGCCTGCAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGcc                                                                                                                                                                                                              <  2:586445/289‑1 (MQ=255)
                                                                         aTGGTCACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCCCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCCAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATTTTACCTTTGCTG‑AAGTGGGCCTGGTTGGAATTGATAATGAAAACCTTGCCCGCCAGCTAc                                                                                                                                                                                                        >  2:1294849/1‑289 (MQ=255)
                                                                              cACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTAcc                                                                                                                                                                                                                                                                <  2:1644811/229‑1 (MQ=255)
                                                                              cACGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGAt                                                                                                                                                                                                    >  1:862150/1‑288 (MQ=255)
                                                                               aCGCCTGAAGCTATCGAGTCAGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTAc                                                                                                                                                                                                                                                                 >  1:719669/1‑227 (MQ=255)
                                                                                           atcgagtcagCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACg                                                                                                                                                                                      >  1:469442/10‑289 (MQ=255)
                                                                                             cgagtcagCCATTACGCCACGTACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGt                                                                                                                                                                                    <  1:282114/282‑1 (MQ=255)
                                                                                                  cagCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTgg                                                                                                                                                                                <  1:263617/286‑1 (MQ=255)
                                                                                                   agCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGgt                                                                                                                                                                              >  1:1567463/2‑289 (MQ=255)
                                                                                                               aCGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGCTGCTGAAATTTCACGGTCTGGGTGTCGATGCCTAt                                                                                                                                                                  >  1:1648095/1‑289 (MQ=255)
                                                                                                                 gCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTTGCCTGACTGTAACCGATACTGAAAACCTTGCCCGCAACCTACGGTTGCTGAAATTTCCCGGCCTGGGCTTCAATGCCAATg                                                                                                                                                                 >  2:7154/1‑288 (MQ=255)
                                                                                                                 gCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATga                                                                                                                                                                <  1:1347131/289‑1 (MQ=255)
                                                                                                                   aCTAAACCCATCATTCCGGTGGATTGTGCCGGTGCGCCAGCAGGTATTGACGCCATTCGCGCCATTGGCGAACGGTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGAAATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATg                                                                                                                                                                 <  2:1250251/286‑1 (MQ=255)
                                                                                                                     tAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATgacaga                                                                                                                                                            <  1:488556/289‑1 (MQ=255)
                                                                                                                     tAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGACATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATgacaga                                                                                                                                                            <  1:580521/289‑1 (MQ=255)
                                                                                                                      aaggCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATGGGCGAACGTTACGGCATCGCAGGTATCGAAGATGCTGCCCATGCCGTCGGTACGTAGTACAAAGGGCGACATATTGGCGCTAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGGTGCCTATgacagac                                                                                                                                                           <  1:1744856/286‑1 (MQ=255)
                                                                                                                      aaaGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATgacagac                                                                                                                                                           <  2:1567463/289‑1 (MQ=255)
                                                                                                                      aaaGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATgacagac                                                                                                                                                           <  2:479155/289‑1 (MQ=255)
                                                                                                                      aaaGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATgacagac                                                                                                                                                           <  2:1681122/289‑1 (MQ=255)
                                                                                                                          ccATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTAc                                                                                                                                                                                                                                                                 >  1:1070534/1‑184 (MQ=255)
                                                                                                                             tcatTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTg                                                                                                                                                    >  2:1757144/1‑289 (MQ=255)
                                                                                                                             tcatTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTg                                                                                                                                                    >  1:662131/1‑289 (MQ=255)
                                                                                                                               atTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑aaa                                                                                                                                                                                                                                                                         >  2:642871/1‑171 (MQ=255)
                                                                                                                                ttCCGGTGCATGATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTgggg                                                                                                                                                 <  2:509925/289‑1 (MQ=255)
                                                                                                                                        cATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCa                                                                                                                                                                                        <  2:1036345/242‑1 (MQ=255)
                                                                                                                                        cATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCa                                                                                                                                                                                        >  1:1036345/1‑242 (MQ=255)
                                                                                                                                                cGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCt                                                                                                                                 <  2:435854/289‑1 (MQ=255)
                                                                                                                                                   tGCGACAGCAGATATGGACTCCCGGCACGCCATTGGCGGACGGTACGGCATCGCAGTTATCGAAGATGCTGCCCATGTCGTCGGTACGTATTAGAGAGGGCGACATATTGGCGCAAGAGGTACCGCTATTGTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATATTGAAAACCTTGCCCGCCAGCGACGGATGCGGAAATTTCACGGTCTGGGTGTCGATGCCGATGACGGACCAACCTGGGGCCGTGCACCGCAGGCTGa                                                                                                                               <  2:212572/288‑1 (MQ=255)
                                                                                                                                                     cgcCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATTAAAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAg                                                                                                                             >  1:20360/1‑289 (MQ=255)
                                                                                                                                                       ccAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCg                                                                                                                                       <  2:1341834/276‑1 (MQ=255)
                                                                                                                                                              atatTGACGGCATTCGCGCCATGGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAacac                                                                                                                    <  1:1151365/288‑1 (MQ=255)
                                                                                                                                                               tctcgACGCCATTGGCGCAAGTGGCGACAGTTACGACATCGCAGTAATGGAGGAGGCTGCCCATGCCGTCGGTACGTATAACAAAGGGCGCCATAGTGGAGCAAAAGGTACCGCTATTTTTTCATCTCATGCCATT‑AAAAAGATTAGCTGTGCTG‑AAGGGGGCCTGATTGTAACTGATAATGAAGACCTTGTCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGACGCGTATGACAGACAAACCTGGGTCCGTGCCCCGCAGGCTGAAGTCTTAacg                                                                                                                     <  2:1217504/282‑2 (MQ=255)
                                                                                                                                                               tatTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCg                                                                                                                  <  2:446849/289‑1 (MQ=255)
                                                                                                                                                                atgtaCGCCCTTCGAGCCATTGGCGACCGTTCAGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCgg                                                                                                                 <  2:50522/285‑1 (MQ=255)
                                                                                                                                                                atTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCgg                                                                                                                 <  1:1584176/289‑1 (MQ=255)
                                                                                                                                                                  tGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCAATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGt                                                                                                                                                                                    <  2:1348059/220‑1 (MQ=255)
                                                                                                                                                                     cggcATTCGGGCCATGGGCGAACGGTAAGGGAGCGCAGTTGTCGAAGAGAGGGCGAGAGGCGGCGGTACGTATTACAAAGGGGGACATATTGGCGGAAAAGGGACCGGTAATTGTTCAGTTCATGGCATG‑AAAAATAGTACCTGGGGTG‑AAGGGGGGCTGATTGTTACTGATGATGGAAACCTTGCCCGCCAGCTACGGATGCTGAAATTGCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCta                                                                                                             <  2:403807/285‑1 (MQ=255)
                                                                                                                                                                     cGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCtat                                                                                                            <  1:88441/289‑1 (MQ=255)
                                                                                                                                                                                               acggattCGCAGTGAGCGAAGCTGGTGCCCATTCCGTCGGTATGTATTACAAAGGGCTACTTATTGGCGCAAAAGGTACCGCTAGTTTTTCATTTCATTCCAGT‑AAAAATATTTCCTGTGCGG‑CAGGGGGGCTGAGTGTAACTGATAATGAACGCCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAAcgc                                                                                  <  2:1088409/283‑1 (MQ=255)
                                                                                                                                                                                               aCGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAAcgc                                                                                  <  1:901511/289‑1 (MQ=255)
                                                                                                                                                                                                     tCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGa                                                                             >  2:1598332/1‑288 (MQ=255)
                                                                                                                                                                                                     tCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCCATAAGTACAATCTGACCGATATTAACGCCGCAAt                                                                            >  2:1179099/1‑289 (MQ=255)
                                                                                                                                                                                                        cAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTg                                                                          >  1:687565/1‑288 (MQ=255)
                                                                                                                                                                                                            tATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGTCTATAAGTACAATCTGACCGCTATTAACGCCGCGATTGCCCTg                                                                     >  1:1803343/1‑289 (MQ=255)
                                                                                                                                                                                                             aTCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGa                                                                    <  1:198867/289‑1 (MQ=255)
                                                                                                                                                                                                                  aGATGCGGCACAGGCCGTCGGTACGTATTACAAAGGGCGACAGAGTGGCGAAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAAGTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAg                                                               <  2:720575/289‑1 (MQ=255)
                                                                                                                                                                                                                               gCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGTGATGTCCCTGAAACAGTTAGGCAAATTaa                                                  >  2:848254/1‑288 (MQ=255)
                                                                                                                                                                                                                                 cGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTagag                                                <  1:939795/289‑1 (MQ=255)
                                                                                                                                                                                                                                  tgcGGTACGGATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATTAAAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTagag                                                <  2:20360/287‑1 (MQ=255)
                                                                                                                                                                                                                                    cGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGt                                                                                                                                                                                    <  1:671268/154‑1 (MQ=255)
                                                                                                                                                                                                                                    cGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGt                                                                                                                                                                                    >  2:671268/1‑154 (MQ=255)
                                                                                                                                                                                                                                    cGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATgacagaca                                                                                                                                                          <  1:137430/180‑1 (MQ=255)
                                                                                                                                                                                                                                    cGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCgg                                                                                                                 >  2:1547357/1‑221 (MQ=255)
                                                                                                                                                                                                                                    cGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCgg                                                                                                                 <  1:1547357/221‑1 (MQ=255)
                                                                                                                                                                                                                                              tACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTAGAGCACCTCAACAcc                                    >  1:823003/1‑288 (MQ=255)
                                                                                                                                                                                                                                                cAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATGGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGTGCTATAAGTACAAACTGACCGATATTAACGCCCCGCTTCCCCTCCCACATTTAGCCAAATTAGAGCAACTCAAccccgc                                  >  2:1634831/1‑286 (MQ=255)
                                                                                                                                                                                                                                                cAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGACTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTAGAGCACCTCAACACCCGt                                 <  2:1124403/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 aaaGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGAGATTTCCCTGACACAGTTAGTCAAATTAGAGCACCTCAACACCCGtt                                >  1:1893778/1‑288 (MQ=255)
                                                                                                                                                                                                                                                     ggCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATga                                                                                                                                                                >  2:1048842/1‑157 (MQ=255)
                                                                                                                                                                                                                                                     ggCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATga                                                                                                                                                                <  1:1048842/157‑1 (MQ=255)
                                                                                                                                                                                                                                                     ggCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAAt                                                                                                   >  2:395269/1‑218 (MQ=255)
                                                                                                                                                                                                                                                     ggCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAAt                                                                                                   <  1:395269/218‑1 (MQ=255)
                                                                                                                                                                                                                                                     ggCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTAGAGCACCTCACCAACCGTCGgc                             >  1:712798/1‑288 (MQ=255)
                                                                                                                                                                                                                                                     ggCGACATATTGGCGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTAGAGCACCTCAACACCCGTCGgc                             >  1:1013675/1‑288 (MQ=255)
                                                                                                                                                                                                                                                        gACATATTGGTGCAAAAGGTACCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAATTAGCCAAATTAGAGCACATCAAACCCCCTCGGCCCGa                         >  2:1799774/1‑289 (MQ=255)
                                                                                                                                                                                                                                                          cATATTGGCGCAAAAGGTAACGCTAATTTTTCATTTCATGCCATT‑AAAACTATTACCGGGGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTAGAGCACCTCAACACCCGTCGGCGCGaaa                       <  2:1483529/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                            aCCGCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTAGAGCACCTCAACACCCGCCGGCGCGAAATTGCCCAGCAATATCagc     >  1:1101671/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                               gCTATTTTTTCATTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTAGAGCACCTCAACACCCGTCGGCGCGAAATTGCCCAGCAATATCagcaag  <  1:1208976/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
GGTTAGTACCCTCAATATGATTTCCTTGTTGGGTGCAACGCCGGTAATGGTGGATGTCGACCGCGATACGCTGATGGTCACGCCTGAAGCTATCGAGAGTGCCATTACGCCACGCACTAAAGCCATCATTCCGGTGCATTATGCCGGTGCGCCAGCAGATATTGACGCCATTCGCGCCATTGGCGAACGTTACGGCATCGCAGTTATCGAAGATGCTGCCCATGCCGTCGGTACGTATTACAAAGGGCGACATATTGGCGCAAAAGGTACCGCTATTTTTAGTTTTCATGCCATT‑AAAAATATTACCTGTGCTG‑AAGGTGGCCTGATTGTAACTGATAATGAAAACCTTGCCCGCCAGCTACGGATGCTGAAATTTCACGGTCTGGGTGTCGATGCCTATGACAGACAAACCTGGGGCCGTGCACCGCAGGCTGAAGTCTTAACACCGGGCTATAAGTACAATCTGACCGATATTAACGCCGCGATTGCCCTGACACAGTTAGTCAAATTAGAGCACCTCAACACCCGTCGGCGCGAAATTGCCCAGCAATATCAGCAAG  >  CP042583/1937435‑1937994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A