Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 616,916 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583616,9160GC99.8% 1010.8 / NA 428intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (215/211);  minor base T (1/0);  total (216/212)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01
*CP042583616,9170CG99.3% 999.5 / NA 428intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/1);  new base G (212/211);  total (216/212)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP042583616,9180TA100.0% 1018.0 / NA 428intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (216/212);  total (216/212)

Only 100 of 428 total aligned reads displayed.

CGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTGCTCA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGGCTGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGGCTGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCGCAGGATGCGGTACTAGTGAAGCCTGGGTCAAAGGTGAACACACCTTT  >  CP042583/616638‑617191
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                  
        aGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTTAAAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTAGCGACGGCAAAGc                                                                                                                                                                                                                                                                    >  2:1559357/1‑289 (MQ=255)
             gTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGATGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGc                                                                                                                                                                                                                                                                    >  1:1207314/1‑283 (MQ=255)
             gTTCCAGAATCGGATTAACTTCATACGGGTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGaa                                                                                                                                                                                                                                                              <  1:2656296/289‑1 (MQ=255)
               tCCAGAATGCGATTAACGTCATACGGGTCGCACGGCGTGGAGAACATCATATTCGGGAAGTTACCGGCGTAGAAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACa                                                                                                                                                                                                                                                            <  2:2936822/289‑1 (MQ=255)
               tCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGaa                                                                                                                                                                                                                                                              <  2:2915045/287‑1 (MQ=255)
               tCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACa                                                                                                                                                                                                                                                            >  1:3063392/1‑289 (MQ=255)
               accaagagcGGATTAAATTCATACGGTTCGGACGGCGTGGAGAAAATCAGATTCAGGAAGTTACCGGCGTAGGAGGGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GAAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACa                                                                                                                                                                                                                                                            <  2:2859994/281‑1 (MQ=255)
                ccAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAg                                                                                                                                                                                                                                                           >  2:2305931/1‑289 (MQ=255)
                         gATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTaa                                                                                                                                                                                                                                                   >  2:1503897/1‑288 (MQ=255)
                                ttCATACGGTTCGCACGGCATGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACGTCGCGGCCATTGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCg                                                                                                                                                                                                                                           <  1:944770/289‑1 (MQ=255)
                                    tACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGCGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGa                                                                                                                                                                                                                                       >  1:1069619/1‑289 (MQ=255)
                                     aCGGTTCGGACGGCGTGGCGAACATCATATTCAGGAAGTGACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGAt                                                                                                                                                                                                                                      <  2:1936149/289‑1 (MQ=255)
                                     aCGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGAt                                                                                                                                                                                                                                      <  1:2883465/289‑1 (MQ=255)
                                     aCGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGAt                                                                                                                                                                                                                                      <  1:1006801/289‑1 (MQ=255)
                                     aCGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGAt                                                                                                                                                                                                                                      <  1:2388980/289‑1 (MQ=255)
                                     aCGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGAt                                                                                                                                                                                                                                      <  1:1395413/289‑1 (MQ=255)
                                      cGGTTCGAACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATc                                                                                                                                                                                                                                     <  2:3063392/289‑1 (MQ=255)
                                         ttCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATg                                                                                                                                                                                                                                  >  1:1816527/1‑289 (MQ=255)
                                                  cGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCAt                                                                                                                                                                                                                                   <  2:1438159/279‑1 (MQ=255)
                                                  cGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATgg                                                                                                                                                                                                                                 <  1:1695956/281‑1 (MQ=255)
                                                  cGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACgg                                                                                                                                                                                                                         >  1:665710/1‑289 (MQ=255)
                                                            atcatATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGtgg                                                                                                                                                                                                               >  1:1296920/1‑287 (MQ=255)
                                                            atcatATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAg                                                                                                                                                                                                               >  1:906054/1‑289 (MQ=255)
                                                                   tCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGt                                                                                                                                                                                                                       <  1:2245829/274‑1 (MQ=255)
                                                                      ggAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAAt                                                                                                                                                                                                                                                  <  2:436647/244‑1 (MQ=255)
                                                                      ggAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAAt                                                                                                                                                                                                                                                  >  1:436647/1‑244 (MQ=255)
                                                                            tACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATa                                                                                                                                                                                               <  1:27487/289‑1 (MQ=255)
                                                                            tACAGGCGTAGGGGGGATCGTTGCGCGGGAAAAAAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATa                                                                                                                                                                                               <  2:1693676/289‑1 (MQ=255)
                                                                             aCCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCa                                                                                                                                                                                                                                                                   <  1:614817/220‑1 (MQ=255)
                                                                               cGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCACCAGCGCGCCGGTCATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCCTGGTTTGGCGGGTCACCGTTGTGTTAACTTCGTCTTACtt                                                                                                                                                                                            >  2:1465387/1‑288 (MQ=255)
                                                                                           gaTCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTTGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCg                                                                                                                                                                                 <  1:2288851/288‑1 (MQ=255)
                                                                                            aTCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACa                                                                                                                                                                                                                                                            >  1:846794/1‑212 (MQ=255)
                                                                                            aTCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGa                                                                                                                                                                                                                                                          >  2:3166377/1‑214 (MQ=255)
                                                                                            aTCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGt                                                                                                                                                                               >  2:2101626/1‑289 (MQ=255)
                                                                                            aTCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGt                                                                                                                                                                               >  2:219487/1‑289 (MQ=255)
                                                                                              cGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCAACGTAGTTTTAAATTCGTCAGACTGTTCCTGAGTCGGttt                                                                                                                                                                             >  1:3110175/1‑289 (MQ=255)
                                                                                                 tGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGCGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGAGCATGGTTTGACGGGTCACCGGAGTTTTAAATTCGGCATTCTGTTCCTGCGTCGGttttt                                                                                                                                                                           >  2:127941/1‑288 (MQ=255)
                                                                                                 tGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑a                                                                                                                                                                                                                                                                        <  2:1245251/195‑1 (MQ=255)
                                                                                                  gcgcGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACAGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCa                                                                                                                                                                         <  1:346508/289‑1 (MQ=255)
                                                                                                   cgcgGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCTGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGATGTGGtttttta                                                                                                                                                                         >  2:976257/1‑286 (MQ=255)
                                                                                                        gTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCg                                                                                                                                                                                                                  >  1:3022339/1‑242 (MQ=255)
                                                                                                        gTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCg                                                                                                                                                                                                                  <  2:3022339/242‑1 (MQ=255)
                                                                                                        gTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTTGTGATACTGTTTTCGAGACGGGTTTTCAcaagt                                                                                                                                                                    >  2:247423/1‑284 (MQ=255)
                                                                                                        gTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTc                                                                                                                                                                   >  1:233143/1‑289 (MQ=255)
                                                                                                        gTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTc                                                                                                                                                                   >  1:2934942/1‑289 (MQ=255)
                                                                                                           aaCGAATTGCTGACCCAATGGAAAACTTGTAACAGACGGCGGCCATGGCAGGAATTTT‑CGCACGGAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGATAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTcag                                                                                                                                                                 <  2:162681/289‑1 (MQ=255)
                                                                                                                aTGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGAt                                                                                                                                                           >  2:701175/1‑289 (MQ=255)
                                                                                                                  ggCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATgg                                                                                                                                                                                                                                 >  1:2497227/1‑217 (MQ=255)
                                                                                                                      gA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACa                                                                                                                                                     <  1:2446523/289‑1 (MQ=255)
                                                                                                                         ccAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGa                                                                                                                                                                                                                            >  2:495793/1‑216 (MQ=255)
                                                                                                                         ccAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGt                                                                                                                                                                                                                       >  1:2818620/1‑221 (MQ=255)
                                                                                                                             tgcaaTACTTGTAACCCATCGCGCCCATGGTCGGCCTTTTCGACA‑GCAGGGGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTc                                                                                                                                               <  2:652978/286‑1 (MQ=255)
                                                                                                                                 aTACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAg                                                                                                                                            <  2:366883/288‑1 (MQ=255)
                                                                                                                                 aTACTTGTAACACATCCCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAgg                                                                                                                                           <  2:2002023/289‑1 (MQ=255)
                                                                                                                                          acacATCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGt                                                                                                                                                                                                                       <  1:1955451/204‑1 (MQ=255)
                                                                                                                                           cacaTCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAAt                                                                                                                                 <  1:976257/289‑1 (MQ=255)
                                                                                                                                              aTCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCa                                                                                                                                                                      >  2:2409954/1‑249 (MQ=255)
                                                                                                                                               tCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTaaa                                                                                                                                                                                                        <  2:2123813/214‑1 (MQ=255)
                                                                                                                                               tCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTaaa                                                                                                                                                                                                        >  1:2123813/1‑214 (MQ=255)
                                                                                                                                               tCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGt                                                                                                                                                                                   >  1:125466/1‑235 (MQ=255)
                                                                                                                                               tCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCa                                                                                                                                                                         >  2:564530/1‑245 (MQ=255)
                                                                                                                                               tCGCGGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCgg                                                                                                                              >  2:1068268/1‑288 (MQ=255)
                                                                                                                                                cgcgGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGAt                                                                                                                                                                                                                                      >  2:2540269/1‑183 (MQ=255)
                                                                                                                                                cgcgGCCATGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCgg                                                                                                                                                                                >  2:805749/1‑237 (MQ=255)
                                                                                                                                                        tGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATAc                                                                                                                                                                                              >  2:1388092/1‑215 (MQ=255)
                                                                                                                                                        tGGTCGGCATTTTCGACA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTg                                                                                                                    >  2:2156999/1‑289 (MQ=255)
                                                                                                                                                              gcatgttcgaca‑gcagGCGGAACTCGGCAATTTCACGGGGACGGGGATTGTTAACATCCAGCGAGTCGTGATAGAAAGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGAGGCGAGACGCGAGGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTGTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTgatcga                                                                                                               <  2:1167278/278‑1 (MQ=255)
                                                                                                                                                               cattttcgaca‑gcagGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTcag                                                                                                                                                                 >  1:2100428/10‑237 (MQ=255)
                                                                                                                                                               cattttcgaca‑gcagGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTgatcgat                                                                                                              <  1:166841/279‑1 (MQ=255)
                                                                                                                                                                        aa‑gcagGCGGACAGCGGCAAATTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGGGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACcg                                                                                                    <  2:2640829/288‑1 (MQ=255)
                                                                                                                                                                            cagGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCCCACATGACTGCAATTGGATCCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGCGTCGGTTTTTCACCATTCAGCAGGAGGTAACAAATGTCCCGGTTGGTAGAATCGGTTGCTATCTGATCTGTCGGCATAcggcgg                                                                                                 >  2:2367508/1‑289 (MQ=255)
                                                                                                                                                                             agGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCgg                                                                                                 <  1:990883/288‑1 (MQ=255)
                                                                                                                                                                                cGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTg                                                                                               <  1:1493720/287‑1 (MQ=255)
                                                                                                                                                                                               tCACGGTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTtcat                                                                              <  2:860037/289‑1 (MQ=255)
                                                                                                                                                                                                   ggTGACGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCAcc                                                                          <  1:2156999/289‑1 (MQ=255)
                                                                                                                                                                                                    gTGACGAGGATTGTTAACATCCAACGAGGCGTGATAGAACGCCGCCAGAGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCAcc                                                                          <  1:1465387/288‑1 (MQ=255)
                                                                                                                                                                                                        cGAGGATTGTTAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTgatcgat                                                                                                              <  1:185307/248‑1 (MQ=255)
                                                                                                                                                                                                                 ttAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAg                                                                                                                                            <  2:2260343/209‑1 (MQ=255)
                                                                                                                                                                                                                 ttAACATCCAGCGAGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTaa                                                            >  2:2753708/1‑289 (MQ=255)
                                                                                                                                                                                                                      atccagcgagTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAg                                                                                                                                            <  1:542049/195‑1 (MQ=255)
                                                                                                                                                                                                                           gcgagTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGt                                                                                                                                                                                                                                          >  2:1304384/5‑105 (MQ=255)
                                                                                                                                                                                                                           gcgagTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTgcagca                                                                                          >  1:1895335/5‑249 (MQ=255)
                                                                                                                                                                                                                           gcgagTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGAACGAACGGGAAACCGCGGTGCCGAAACTAAACTTCTTCCCCATCTATTAAAGTAATTTTAAAtt                                                   >  2:3102359/5‑288 (MQ=255)
                                                                                                                                                                                                                             gagTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCg                                                 <  1:2009635/286‑1 (MQ=255)
                                                                                                                                                                                                                               gTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCGCa                                               <  1:2563841/288‑1 (MQ=255)
                                                                                                                                                                                                                                tCGTGATAGAACGCCGCCTGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCGCAgg                                             >  1:14379/1‑289 (MQ=255)
                                                                                                                                                                                                                                tCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAgg                                                                                                                                           <  1:1517853/195‑1 (MQ=255)
                                                                                                                                                                                                                                 cGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCGCAGGa                                            <  2:1757937/289‑1 (MQ=255)
                                                                                                                                                                                                                                      taggaaccctccAGCACGCCGGTAATTACACACATGGCGGCCGTTGGATGAGAGTCGCGACGG‑AAAGCATGGAACAGATGTGTACTCTGGTCGTGGATCAGGGTATGACGGGTCACAGTAGTTTTAAATTCGTCATCCTGTTGCTGAGTAGGTTTTTCACCAGGAAGCAGGATGTAACAAAATTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATGGGGAAACCGCGGTGAAGCAAAATACCTTCATCACCATAAATAAAAGTAATTTTAGATTCGCAGGATGCgg                                       <  2:1826578/279‑1 (MQ=255)
                                                                                                                                                                                                                                              cgccAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAg                                                                                                                                            <  1:2182164/180‑1 (MQ=255)
                                                                                                                                                                                                                                              cgccAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCg                                                 >  2:2137201/1‑271 (MQ=255)
                                                                                                                                                                                                                                              cgccAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCg                                                 <  1:2137201/271‑1 (MQ=255)
                                                                                                                                                                                                                                                   gcgcgcCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTGTGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCGCAGGATGCGGTTGAAGTGAAGcc                          >  1:1726618/1‑289 (MQ=255)
                                                                                                                                                                                                                                                     gcgcCGGTAATACCACACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCGCAGGATGCGGATGAAGTGAAGcc                          <  1:784417/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                aCCAGACATGACTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACGGTTCCTGAGTCGGTTTTTAACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGAGCGGGAAACAGTGGTGCAGCAAAATACCTTCATCACCATCAAGAAAAGTAATTTTAGATTCGCAGGATGCGGTTGAAGTGAAGcc                          <  1:3168512/276‑1 (MQ=255)
                                                                                                                                                                                                                                                                  aacacaTGAATGCCATTGGATGCGAGTCGCGACTG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCGCAGGATGCGGTTGAAGTGAAGCCTGGGTCAAAGGTGaa           <  2:1871094/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                          aCTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCg                                                                                                                                                                                                                  <  2:931424/82‑1 (MQ=255)
                                                                                                                                                                                                                                                                          aCTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAg                                                                                                                                            <  1:2969914/152‑1 (MQ=255)
                                                                                                                                                                                                                                                                          aCTGCCATTGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCGCAGGATGCGGTTGAAGTGAAGCCTGGGTCAAAGGTGAacac        >  1:1594513/1‑284 (MQ=255)
                                                                                                                                                                                                                                                                                 ttGGATGCGAGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCa                                                                                                                                                                      <  1:1347607/119‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                  
CGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGA‑CCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTGCTCA‑GCAGGCGGAACGCGGCAATTTCACGGTGACGAGGATTGTTAACATCCAGGCTGTCGTGATAGAACGCCGCCAGCGCGCCGGTAATACCACACATGACTGCCATTGGATGGCTGTCGCGACGG‑AAAGCATGGAACAGACGGGTAATCTGCTCGTGGATCATGGTATGACGGGTCACCGTAGTTTTAAATTCGTCATACTGTTCCTGAGTCGGTTTTTCACCATTCAGCAGGATGTAACAAACTTCCAGGTAGTTAGAATCGGTCGCCAGCTGATCGATCGGGAAACCGCGGTGCAGCAAAATACCTTCATCACCATCAATAAAAGTAATTTTAGATTCGCAGGATGCGGTACTAGTGAAGCCTGGGTCAAAGGTGAACACACCTTT  >  CP042583/616638‑617191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A