Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F210 I1 R1	4928	368.7	6392010	97.5%	6232209	231.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	626,553	3 bp→TCG	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	626,553	0	A	T	99.0%	713.1 / NA	303	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/1); major base T (149/149); minor base G (1/2); total (151/152)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	626,554	0	G	C	99.0%	709.1 / ‑4.7	303	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (0/1); major base C (150/149); minor base T (1/2); total (151/152)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	626,555	0	C	G	99.7%	714.8 / NA	303	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/1); new base G (151/151); total (151/152)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 303 total aligned reads displayed.

TAAAGTTGCGCTTGATCCGCTGACTGGCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGAGC‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAGCCGTTCTGGTTAACATCTTCGGCGGTATCGTTCGTTGCGACCTG  >  CP042583/626282‑626828

|||

tAAAGTTGCGCTTGATCCGCTGACTGGCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGt                                                                                                                                                                                                                                                                      <  2:2868204/289‑1 (MQ=255)

     tgtggcTTGATTCTCTGACGGGCCCGATGCAGTGACAGGGACGCGATCTGGCGGTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGG‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGc                                                                                                                                                                                                                                                                 <  2:2791506/285‑1 (MQ=255)

      tGCGCTTGATCCGCTGACTGGCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGc                                                                                                                                                                                                                                                                 <  1:2415615/288‑1 (MQ=255)

      tGCGCTTGATCCGCTGACTGGCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGc                                                                                                                                                                                                                                                                 <  2:2060468/288‑1 (MQ=255)

       gcgcTTGATCCGCTGACTGGCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGcac                                                                                                                                                                                                                                                               <  1:3048538/289‑1 (MQ=255)

        cgcTTGATCCGCTGACTGGCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATTCGTGACCAGTCG‑CAGGAACATCCGCGTGAAgacca                                                                                                                                                                                                                                                              >  2:2365998/1‑285 (MQ=255)

               tCCGCTGACTGGCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGc                                                                                                                                                                                                                                                        <  1:914568/288‑1 (MQ=255)

                          gCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGga                                                                                                                                                                                                                                               >  1:2752832/1‑286 (MQ=255)

                          gCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGga                                                                                                                                                                                                                                               >  1:567445/1‑286 (MQ=255)

                           cccGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGgaact                                                                                                                                                                                                                                            <  1:2246610/288‑1 (MQ=255)

                             cGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGgaactgaa                                                                                                                                                                                                                                         <  1:995213/289‑1 (MQ=255)

                             cGATGCCGTAGCAGGGACGCGGGCTCGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTAACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGgaactgaa                                                                                                                                                                                                                                         <  2:1544524/289‑1 (MQ=255)

                                tGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CCGGAAGATCCGCGTGAAGCACAGGCTGCACAGGGGGGACGGAACTa                                                                                                                                                                                                                                      >  2:555277/1‑289 (MQ=255)

                                tGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGc                                                                                                                                                                                                                                                        >  1:1817065/1‑271 (MQ=255)

                                tGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGCTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGACATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGCTTTGCCTCGACGGCCAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCCGACCTCCGCGAAATGCGTGACCAGCTG‑CAGGAAGATCAGCGTCAAGCACAAGCAGCCCAGTGGcaacggacaga                                                                                                                                                                                                                                      >  2:2005015/1‑285 (MQ=255)

                                   cGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACg                                                                                                                                                                                                                                    <  1:3159488/288‑1 (MQ=255)

                                     tATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGt                                                                                                                                                                                                                                                                      <  1:1917546/252‑1 (MQ=255)

                                       tCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑gcg                                                                                                                                                                                                                             <  1:3097547/289‑1 (MQ=255)

                                                cgAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGt                                                                                                                                                                                                                    >  1:1064832/1‑289 (MQ=255)

                                                    cTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAAc                                                                                                                                                                                                                 <  2:609451/288‑1 (MQ=255)

                                                               aCTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATg                                                                                                                                                                                                     <  1:861677/289‑1 (MQ=255)

                                                                   ggTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATcc                                                                                                                                                                                                                                                                          >  2:425914/1‑218 (MQ=255)

                                                                     tCTGGAAGGTAACCTGGTTCTGCACTCCACCAAAACGGTTCGGAGCCAGGCCACCACTTTCCTGGAGCGGCAACGTGGC‑TTGCGAGAACGCCACCAGGTGCTGACGCCCAAACCGGGCGGTCTGATTTGCCTCGACGGCAAACTTGGCGCTGACTCCATCGCACCGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCA‑AGCGCAGGAAACTCCACGTGAAGCACCGGCTGCACAGTGGGCACTGAACTACGTT‑‑TCGCTGGACGGTAACATCGTTTGTCTCGTTaa                                                                                                                                                                                                <  2:2322865/288‑1 (MQ=255)

                                                                           aGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGgcgc                                                                                                                                                                                          <  1:1280579/288‑1 (MQ=255)

                                                                             gTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGca                                                                                                                                                                                                                                                       >  2:359335/1‑227 (MQ=255)

                                                                              tAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGgaactgaa                                                                                                                                                                                                                                         >  1:635051/1‑240 (MQ=255)

                                                                              tAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAgg                                                                                                                                                                                       >  1:2506238/1‑288 (MQ=255)

                                                                              tAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGCAGGGTTAACGgccgagg                                                                                                                                                                                       >  2:2836761/1‑283 (MQ=255)

                                                                                aaCTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CANGCAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGGT‑‑GCGCTGGGAGGTAACATCGGTTGTATGNTTAACGGCGCAgg                                                                                                                                                                                       >  2:2609136/1‑286 (MQ=255)

                                                                                   tGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGt                                                                                                                                                                                                        >  1:708312/1‑266 (MQ=255)

                                                                                       taaggagTTAACCAAAATCGTGATGGGCTTGGCGGCCATTTTCCTGGAGC‑GCTACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGAt                                                                                                                                                                              <  2:1424162/283‑1 (MQ=255)

                                                                                        cagcagTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACg                                                                                                                                                                                                                                    >  2:117797/1‑235 (MQ=255)

                                                                                          gcagTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGt                                                                                                                                                                          <  2:877861/289‑1 (MQ=255)

                                                                                           cagTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTTCTCCGCCAGCCTGATCTGCGCGCAATGCGTGACCAGTCG‑CAGGACGATCCGCGTGCAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCTCTTGACGTTAACATCGGTTGTAGGGTTAACGGCGGAGGTCTGGCGATGGGt                                                                                                                                                                          >  2:1233485/1‑288 (MQ=255)

                                                                                                cACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATg                                                                                                                                                                    >  1:1987950/1‑289 (MQ=255)

                                                                                                  ccAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGa                                                                                                                                                                  <  2:645193/289‑1 (MQ=255)

                                                                                                            cATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGGATGGTTAAAGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTaa                                                                                                                                                         >  1:762032/1‑288 (MQ=255)

                                                                                                                    tGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGAt                                                                                                                                                                                                                                                                            <  2:1043571/167‑1 (MQ=255)

                                                                                                                     ggCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCAcggc                                                                                                                                               >  1:1650521/1‑289 (MQ=255)

                                                                                                                     ggCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCCTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTACCATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCAcggc                                                                                                                                               >  2:2503097/1‑289 (MQ=255)

                                                                                                                           cATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGc                                                                                                                                                                                                                                                                 >  1:735534/1‑171 (MQ=255)

                                                                                                                           cATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGc                                                                                                                                                                                                                                                                 <  2:735534/171‑1 (MQ=255)

                                                                                                                           cATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGaa                                                                                                                                         <  2:402212/289‑1 (MQ=255)

                                                                                                                           cATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATAACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGaa                                                                                                                                         <  1:2966678/289‑1 (MQ=255)

                                                                                                                               ttCCTGGAGG‑CGGACCGGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAGCAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCgg                                                                                                                                     <  2:2476555/289‑1 (MQ=255)

                                                                                                                                        c‑gcgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACg                                                                                                                                                                                                                                    >  2:1824895/1‑187 (MQ=255)

                                                                                                                                           cgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGcac                                                                                                                                                                                                                                                               >  2:179878/1‑158 (MQ=255)

                                                                                                                                           cgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGcac                                                                                                                                                                                                                                                               <  1:2461839/158‑1 (MQ=255)

                                                                                                                                           cgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACAt                                                                                                                                                                                                               <  1:1027081/204‑1 (MQ=255)

                                                                                                                                           cgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGt                                                                                                                                                                          <  1:486772/241‑1 (MQ=255)

                                                                                                                                           cgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGt                                                                                                                                                                          >  2:486772/1‑241 (MQ=255)

                                                                                                                                           cgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCtt                                                                                                                          >  1:1915439/1‑289 (MQ=255)

                                                                                                                                           cgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCtt                                                                                                                          >  1:2331644/1‑289 (MQ=255)

                                                                                                                                           cgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCtt                                                                                                                          >  1:1836870/1‑289 (MQ=255)

                                                                                                                                           cgACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGGCTGGCGATGGGTCAGATGGACAACGTTAAACTGCACGGCGGCGAACCTGCTAACTTCCtt                                                                                                                          >  2:3170477/1‑289 (MQ=255)

                                                                                                                                                        aTCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCCAACTGGTCCCTGACGGCAACGCACTGTTCCGCCCGCCTCATCTGCGCGAAATGCGTGCCCAATCG‑CGGGGAGATCCGCCTCAACCACACGCTGCACGGTCGGAACGGAACTACGCT‑‑GCGCTGGACGGTAACACAGGTTGTACGGTTAACGGCCCAGGTTGGGCCACGGGTACAATGGAAATCGTTAAACCGGACGGCGGCGAACCGGGTAACTTCCTTGCATTTtgcggcg                                                                                                             >  2:1848186/1‑289 (MQ=255)

                                                                                                                                                        aTCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGgaactgaa                                                                                                                                                                                                                                         <  1:2114437/167‑1 (MQ=255)

                                                                                                                                                        aTCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGgcg                                                                                                                                                                                           <  2:2219748/211‑1 (MQ=255)

                                                                                                                                                        aTCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGa                                                                                                                                                                  <  2:698663/236‑1 (MQ=255)

                                                                                                                                                        aTCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTa                                                                                                                                                          >  1:2218777/1‑244 (MQ=255)

                                                                                                                                                        aTCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGAc                                                                                                                       >  1:1176215/1‑279 (MQ=255)

                                                                                                                                                        aTCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTggcggcg                                                                                                             >  1:1532968/1‑289 (MQ=255)

                                                                                                                                                           gAACTCACCCCGCTGGTCATCACCAACCAGGGCGAGCTGATGTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGgcggcggcg                                                                                                          <  2:1520541/289‑1 (MQ=255)

                                                                                                                                                                 aaCCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCa                                                                                                    <  1:3184098/289‑1 (MQ=255)

                                                                                                                                                                       cTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTaa                                                                                                                                                                                                                  <  1:2831776/173‑1 (MQ=255)

                                                                                                                                                                              tcaCCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGa                                                                                                                                                                  <  1:512111/214‑1 (MQ=255)

                                                                                                                                                                              tcaCCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGa                                                                                                                                                                  >  2:512111/1‑214 (MQ=255)

                                                                                                                                                                                  cAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTTGCGCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCg                                                                                     >  1:2535946/1‑289 (MQ=255)

                                                                                                                                                                                    aaCAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGc                                                                                 >  2:1973673/1‑289 (MQ=255)

                                                                                                                                                                                    aaCAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTCCCTTGACGTCTGCGGTGGGCCAAGCAAAGAAccgatgacccggc                                                                                  >  2:1378615/1‑276 (MQ=255)

                                                                                                                                                                                     aCAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCCCGTGAAGCACAGGCTGCACAGTGGTAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAAAGGCGCAGGTCTGGCGATGGGTACGATGGACCTTGGTCAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACTTGGTAGGCTGCGCCACCAAAGAACTTGTaaccgaaccg                                                                                >  2:3045433/1‑289 (MQ=255)

                                                                                                                                                                                       aGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGtt                                                                                                                                                                                                          <  1:2682098/165‑1 (MQ=255)

                                                                                                                                                                                         ggCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑gcgc                                                                                                                                                                                                                            >  2:2147475/1‑145 (MQ=255)

                                                                                                                                                                                         ggCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑gcg                                                                                                                                                                                                                             >  2:855465/1‑144 (MQ=255)

                                                                                                                                                                                         ggCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGa                                                                                                                                                                  >  1:664624/1‑203 (MQ=255)

                                                                                                                                                                                           cGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTa                                                                                                                                  >  1:2600317/1‑233 (MQ=255)

                                                                                                                                                                                              tCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGgcggcggcg                                                                                                          <  2:2965337/254‑1 (MQ=255)

                                                                                                                                                                                                       ccTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGa                                                                                                                                                                               <  1:2049295/176‑1 (MQ=255)

                                                                                                                                                                                                            aCGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGcac                                                                                                                                                                                                                                                      >  1:375335/1‑102 (MQ=255)

                                                                                                                                                                                                            aCGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTgg                                                                                                                                                                                                                         <  1:17470/129‑1 (MQ=255)

                                                                                                                                                                                                                       ggCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGa                                                                                                                                                                  <  2:1916821/173‑1 (MQ=255)

                                                                                                                                                                                                                            tGACGGCAACGCACTGTTCCGCCAGACTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCAGCGTGAAGCACAGGCTGCACAGCGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGCTGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCCACCAACGAACGTGTAACCGAAGCGTTCAAAATCATCGTCTCAGACGACAAAGTGAAGGACGt                                          >  2:2588860/1‑288 (MQ=255)

                                                                                                                                                                                                                              aCGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATcc                                                                   <  1:2886315/261‑1 (MQ=255)

                                                                                                                                                                                                                                     cGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGGTG‑CAGGAAGATCCACGGGAAGCACAGGCTGAACAGTGGGAACTGAACTACTTT‑‑GCGCTGGACGGTAACATCAGTTGTATGGTTAACGGCGGAGGTCTGGCGATGGGTACGATGGACATCGTTAACCTGCCCGGCGGCGAACCGGCTAGCTTCCTTGACGTTGgaggcggcg                                                                                                          <  2:1122992/215‑1 (MQ=255)

                                                                                                                                                                                                                                        aCTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGgcggcggcg                                                                                                          >  2:1711950/1‑212 (MQ=255)

                                                                                                                                                                                                                                          tGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAGCCGTTCTGGTTAACATCtt                           <  2:905778/289‑1 (MQ=255)

                                                                                                                                                                                                                                            gtCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTgacgac                                                        <  2:2682590/257‑1 (MQ=255)

                                                                                                                                                                                                                                             accGCCAGCCGTATCTGGGCGAAATGGGTGACCAGTCG‑CGGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCGGGACGGTAACATCGGTGGGATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAGCCGTTCTGGTTAACATCTTcgg                        <  2:1587196/288‑1 (MQ=255)

                                                                                                                                                                                                                                              ccGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAGCCGTTCTGGTTAACATCTTcggc                       >  1:2915655/1‑289 (MQ=255)

                                                                                                                                                                                                                                               cGCCAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGGTAACGGCGCAGGTCTGGCGAGGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGa                                                                                                >  1:1122992/1‑215 (MQ=255)

                                                                                                                                                                                                                                                 ccAGCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAGCCGTTCTGGTTAACa                               >  1:1396853/1‑278 (MQ=255)

                                                                                                                                                                                                                                                    gCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CGGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTgacgac                                                        >  1:1485760/1‑250 (MQ=255)

                                                                                                                                                                                                                                                    gCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTggc                                                                                                                 >  2:2895617/1‑193 (MQ=255)

                                                                                                                                                                                                                                                    gCCTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAg                                              >  2:2433732/1‑260 (MQ=255)

                                                                                                                                                                                                                                                      cTGATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAGCCGTTCTGGTTAACATCTTCGGCGGTAtcgt               >  1:1226827/1‑289 (MQ=255)

                                                                                                                                                                                                                                                        gATCTGCGCGAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAGCCGTTCTGGTTAAc                                <  1:2842302/270‑1 (MQ=255)

                                                                                                                                                                                                                                                              cgcgAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCa                                                                                                                                                   <  2:3091618/149‑1 (MQ=255)

                                                                                                                                                                                                                                                              cgcgAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACACCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGtt                                                                              <  2:3011372/218‑1 (MQ=255)

                                                                                                                                                                                                                                                              cgcgAAATGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACACCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGtt                                                                              >  1:3011372/1‑218 (MQ=255)

                                                                                                                                                                                                                                                                   aaTGCGTGACCAGTCG‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAGCCGTTCTGGTTAACATCTTCGGCGGTATCGTTCGTTGCGACCTg  >  1:421430/1‑289 (MQ=255)

|||

TAAAGTTGCGCTTGATCCGCTGACTGGCCCGATGCCGTATCAGGGACGCGAGCTGGCGTTCAAACTGGGTCTGGAAGGTAAACTGGTTCAGCAGTTCACCAAAATCTTCATGGGCCTGGCGACCATTTTCCTGGAGC‑GCGACCTGGCGTTGATCGAAATCAACCCGCTGGTCATCACCAAACAGGGCGATCTGATTTGCCTCGACGGCAAACTGGGCGCTGACGGCAACGCACTGTTCCGCCAGCCTGATCTGCGCGAAATGCGTGACCAGAGC‑CAGGAAGATCCGCGTGAAGCACAGGCTGCACAGTGGGAACTGAACTACGTT‑‑GCGCTGGACGGTAACATCGGTTGTATGGTTAACGGCGCAGGTCTGGCGATGGGTACGATGGACATCGTTAAACTGCACGGCGGCGAACCGGCTAACTTCCTTGACGTTGGCGGCGGCGCAACCAAAGAACGTGTAACCGAAGCGTTCAAAATCATCCTCTCTGACGACAAAGTGAAAGCCGTTCTGGTTAACATCTTCGGCGGTATCGTTCGTTGCGACCTG  >  CP042583/626282‑626828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A